BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0850 (PAB0850) DE:Hypothetical protein
         (143 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75037 hypothetical protein PAB0850 - Pyrococcus abyssi (st...   271  3e-72
pir||G71125 hypothetical protein PH0773 - Pyrococcus horikoshii ...   143  1e-33

>pir||E75037 hypothetical protein PAB0850 - Pyrococcus abyssi (strain Orsay)
           >gi|5458707|emb|CAB50194.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 143
           
 Score =  271 bits (685), Expect = 3e-72
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MKLNLSLKGPSLIIFLVLAVILLHLPYGGFMAGIMLLPLISYSLGVIGLSILATYLILLR 60
           MKLNLSLKGPSLIIFLVLAVILLHLPYGGFMAGIMLLPLISYSLGVIGLSILATYLILLR
Sbjct: 1   MKLNLSLKGPSLIIFLVLAVILLHLPYGGFMAGIMLLPLISYSLGVIGLSILATYLILLR 60

Query: 61  ITDILGVTIISLGLLLLEMREMERIKAPGYSYLFLLLAIILGFLAYGTIYAIGLLGIGIE 120
           ITDILGVTIISLGLLLLEMREMERIKAPGYSYLFLLLAIILGFLAYGTIYAIGLLGIGIE
Sbjct: 61  ITDILGVTIISLGLLLLEMREMERIKAPGYSYLFLLLAIILGFLAYGTIYAIGLLGIGIE 120

Query: 121 VTLGAIIFALFLYAFIRSSLLTP 143
           VTLGAIIFALFLYAFIRSSLLTP
Sbjct: 121 VTLGAIIFALFLYAFIRSSLLTP 143


>pir||G71125 hypothetical protein PH0773 - Pyrococcus horikoshii
           >gi|3257182|dbj|BAA29865.1| (AP000003) 138aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 138
           
 Score =  143 bits (356), Expect = 1e-33
 Identities = 70/133 (52%), Positives = 104/133 (77%)

Query: 11  SLIIFLVLAVILLHLPYGGFMAGIMLLPLISYSLGVIGLSILATYLILLRITDILGVTII 70
           SL++ +VLA++L  LP+G  + GIM L L+S++LG+I L ILA YLI+ RIT+I+GV I+
Sbjct: 6   SLLLMIVLALLLYPLPHGVILIGIMTLSLLSHTLGIISLGILALYLIVFRITNIVGVAIM 65

Query: 71  SLGLLLLEMREMERIKAPGYSYLFLLLAIILGFLAYGTIYAIGLLGIGIEVTLGAIIFAL 130
           +LGLL++E+REME+I+AP   +L+L++A+ L  L Y  +YAI L G+ ++VTL A++F L
Sbjct: 66  ALGLLVVEIREMEKIRAPMEHFLYLIVAVGLSLLTYFGVYAISLAGVSLDVTLLAVLFLL 125

Query: 131 FLYAFIRSSLLTP 143
            LYAFIR S+L+P
Sbjct: 126 LLYAFIRISVLSP 138


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.334    0.155    0.435 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46924211
Number of Sequences: 2977
Number of extensions: 1814557
Number of successful extensions: 7986
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7980
Number of HSP's gapped (non-prelim): 2
length of query: 143
length of database: 189,106,746
effective HSP length: 49
effective length of query: 94
effective length of database: 159,780,883
effective search space: 15019403002
effective search space used: 15019403002
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (22.0 bits)
S2: 161 (67.1 bits)