BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0852 (soj) DE:SOJ PROTEIN homolog
(257 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75038 soj protein homolog PAB0852 - Pyrococcus abyssi (str... 503 e-142
pir||A71125 probable SOJ protein - Pyrococcus horikoshii >gi|325... 465 e-130
gi|10954513 SOJ protein [Methanococcus jannaschii] >gi|2496226|s... 270 9e-72
sp|P37522|SOJ_BACSU SOJ PROTEIN >gi|2127177|pir||I40444 Spo0A ac... 183 2e-45
emb|CAC06097.1| (AJ010494) ParA protein [Listeria monocytogenes] 175 4e-43
dbj|BAB07777.1| (AP001520) centromere-like function involved in ... 173 1e-42
pir||T36875 probable partitioning or sporulation protein - Strep... 169 3e-41
pir||C70504 hypothetical protein Rv1708 - Mycobacterium tubercul... 164 7e-40
pir||A82577 chromosome partitioning protein XF2282 [imported] - ... 161 6e-39
pir||S72958 hypothetical protein u0247b - Mycobacterium leprae >... 161 1e-38
emb|CAB08277.1| (Z95117) hypothetical protein MLC1351.06c [Mycob... 157 9e-38
pir||B71346 probable SpoOJ regulator (soj) - syphilis spirochete... 156 2e-37
pir||D81426 parA family protein Cj0100 [imported] - Campylobacte... 154 8e-37
pir||F70153 conserved hypothetical protein BB0431 - Lyme disease... 152 5e-36
pir||C64662 regulatory protein spo0J - Helicobacter pylori (stra... 150 2e-35
pir||A71853 hypothetical protein jhp1067 - Helicobacter pylori (... 150 2e-35
pir||E82035 ParA family protein VC2773 [imported] - Vibrio chole... 149 3e-35
pir||C81999 parA family protein NMA0076 [imported] - Neisseria m... 147 1e-34
pir||D81227 ParA family protein NMB0191 [imported] - Neisseria m... 146 3e-34
sp|O05189|PARA_CAUCR CHROMOSOME PARTITIONING PROTEIN PARA >gi|19... 145 7e-34
pir||B82950 chromosome partitioning protein Soj PA5563 [imported... 143 2e-33
pir||F70851 probable parB protein - Mycobacterium tuberculosis (... 142 4e-33
gb|AAF16005.1|AF187159_5 (AF187159) ParA [Streptomyces coelicolo... 141 8e-33
pir||B71714 soj protein (soj) RP058 - Rickettsia prowazekii >gi|... 141 1e-32
gb|AAC03484.1| (AF031590) Soj-like [Streptomyces coelicolor A3(2)] 140 2e-32
pir||T36573 probable partitioning or sporulation protein - Strep... 140 2e-32
sp|P31856|YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN GIDB-UNCI I... 138 9e-32
pir||F70595 hypothetical protein Rv3213c - Mycobacterium tubercu... 136 3e-31
gb|AAB53135.1| (L39923) ORF278; hypothetical 30.3 Kd protein; si... 136 3e-31
gb|AAF32419.1| (AF069392) SOJ-like protein [Vibrio parahaemolyti... 130 1e-29
emb|CAB89207.1| (AJ277593) putative partitioning protein [Thermu... 129 4e-29
pir||G82122 ParA family protein VC2061 [imported] - Vibrio chole... 125 4e-28
pir||D75570 chromosome partitioning ATPase Soj - Deinococcus rad... 122 6e-27
pir||T46618 hypothetical protein 3 [imported] - Pseudomonas aeru... 116 2e-25
pir||H69060 chromosome partitioning protein Soj - Methanobacteri... 116 2e-25
emb|CAA57590.1| (X82078) ORF7 [Chlamydophila pneumoniae] 116 3e-25
gi|10803576 sojB [Halobacterium sp. NRC-1] >gi|7444247|pir||T082... 114 1e-24
gi|11497378 plasmid partition protein, putative [Borrelia burgdo... 111 1e-23
gi|10956429 pXO2-39 [Bacillus anthracis] >gi|6470190|gb|AAF13644... 111 1e-23
pir||G39999 hypothetical protein 7 - Chlamydophila psittaci 108 5e-23
gi|10957096 hypothetical protein [Chlamydophila psittaci] >gi|97... 108 5e-23
gb|AAC08068.1| (AF031898) unknown [Pseudomonas putida] 107 1e-22
emb|CAA60657.1| (X87202) orfC [Borrelia burgdorferi] 106 2e-22
pir||E75592 probable chromosome partitioning ATPase, ParA family... 106 4e-22
pir||G71495 probable chromosome partitioning ATPase-chltr plasmi... 103 2e-21
pir||B81656 ParA family protein TC0871 [imported] - Chlamydia mu... 102 3e-21
gi|11497013 conserved hypothetical protein [Borrelia burgdorferi... 102 4e-21
gi|11496835 conserved hypothetical protein [Borrelia burgdorferi... 102 4e-21
pir||F72034 ParA chromosome partitioning ATPasen CP1066 [importe... 101 7e-21
pir||B47092 copy control protein repB - Enterococcus faecalis pl... 101 9e-21
gi|11496706 conserved hypothetical protein [Borrelia burgdorferi... 101 9e-21
pir||H83016 conserved hypothetical protein PA5028 [imported] - P... 100 2e-20
gi|11496669 stage 0 sporulation protein J (spoOJ) [Borrelia burg... 99 5e-20
gi|11496639 conserved hypothetical protein [Borrelia burgdorferi... 98 1e-19
pir||A75056 cell division inhibitor (mind-2) PAB0954 - Pyrococcu... 98 1e-19
gi|11496646 conserved hypothetical protein [Borrelia burgdorferi... 97 2e-19
gi|11497116 plasmid partition protein, putative [Borrelia burgdo... 96 3e-19
gi|11496789 conserved hypothetical protein [Borrelia burgdorferi... 96 5e-19
gi|10956608 plasmid partition protein homolog ParB [Corynebacter... 96 5e-19
gb|AAF29793.1|AF169008_20 (AF169008) ORF21 [Borrelia burgdorferi] 96 5e-19
gi|10956683 ORF1 [Streptomyces clavuligerus] >gi|421641|pir||S30... 95 9e-19
pir||A75323 probable chromosome partitioning ATPase, ParA family... 94 2e-18
gi|11497340 plasmid partition protein, putative [Borrelia burgdo... 94 2e-18
gb|AAC45808.1| (AF015088) putative plasmid partitioning protein;... 92 5e-18
gi|11497239 plasmid partition protein, putative [Borrelia burgdo... 92 5e-18
gi|11496914 conserved hypothetical protein [Borrelia burgdorferi... 92 6e-18
pir||C71105 probable cell division inhibitor MinD - Pyrococcus h... 92 6e-18
gb|AAF34248.1|AF168003_3 (AF168003) putative Soj [Desulfovibrio ... 92 6e-18
gi|11497362 plasmid partition protein, putative [Borrelia burgdo... 92 8e-18
gi|10956770 plasmid replication protein [Xylella fastidiosa] >gi... 92 8e-18
gi|11496614 conserved hypothetical protein [Borrelia burgdorferi... 91 1e-17
gi|11497171 plasmid partition protein, putative [Borrelia burgdo... 91 1e-17
gb|AAD37842.1|AF109075_4 (AF109075) unknown [Clostridium difficile] 91 1e-17
pir||S45079 hypothetical protein delta - Streptococcus pyogenes ... 90 2e-17
gb|AAD46128.1|AF078924_7 (AF078924) putative ParA [Plasmid pM3] 90 3e-17
sp|Q57633|Y169_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0169 >gi... 89 4e-17
pir||I40877 hypothetical protein 298 (DR1) - Clostridium perfrin... 89 7e-17
pir||I40880 hypothetical protein 298 (DR2) - Clostridium perfrin... 89 7e-17
gb|AAF27301.1|AF154674_2 (AF154674) ParA [Lactococcus lactis sub... 88 1e-16
gi|10957571 virulence plasmid ParA family protein pGP5-D [Chlamy... 88 1e-16
emb|CAA63500.1| (X92946) soj [Lactococcus lactis] 87 2e-16
gb|AAB17955.1| (U63319) Orf1 [Borrelia hermsii] 87 3e-16
gb|AAC02983.1| (AF036766) replication-associated protein A [Lact... 87 3e-16
gi|11497207 plasmid partition protein, putative [Borrelia burgdo... 86 4e-16
gi|10955986 orf 406; similarity to SOPA_ECOLI sopa protein (prot... 85 1e-15
gb|AAC35451.1| (AF022482) possible plasmid partition protein; or... 85 1e-15
sp|Q50314|SOJ_MYCPN SOJ PROTEIN HOMOLOG >gi|2127659|pir||S62837 ... 84 1e-15
gb|AAB69096.2| (U80928) RepA [Rhizobium etli] 84 1e-15
gb|AAG00324.1| (AF209440) unknown [Borrelia hermsii] 84 1e-15
gb|AAG20825.1| (AE005151) Spo0A activation inhibitor; SojC2 [Hal... 84 1e-15
pir||S74955 hypothetical protein slr1597 - Synechocystis sp. (st... 84 2e-15
gi|11497284 plasmid partition protein, putative [Borrelia burgdo... 84 2e-15
pir||B69113 cell division inhibitor - Methanobacterium thermoaut... 83 2e-15
sp|P05682|REPA_AGRRH POSSIBLE REPLICATION PROTEIN A >gi|77897|pi... 83 3e-15
sp|P47706|SOJ_MYCGE SOJ PROTEIN HOMOLOG >gi|1361855|pir||I64251 ... 82 5e-15
gi|11497082 plasmid partition protein, putative [Borrelia burgdo... 82 7e-15
gi|11497397 plasmid partition protein, putative [Borrelia burgdo... 82 7e-15
gi|10957157 conserved hypothetical protein [Lactococcus lactis] ... 82 7e-15
emb|CAB43193.1| (AJ011655) replication protein Rep63B [Bacillus ... 82 7e-15
gi|11496739 conserved hypothetical protein [Borrelia burgdorferi... 80 2e-14
gi|10955188 IncC2 [Enterobacter aerogenes] >gi|7444174|pir||T084... 80 3e-14
gi|10955189 IncC1 [Enterobacter aerogenes] >gi|6686301|sp|Q52312... 80 3e-14
gi|10803634 sojD [Halobacterium sp. NRC-1] >gi|7444243|pir||T083... 80 3e-14
gb|AAG20964.1| (AE005163) Spo0A activation inhibitor; SojE [Halo... 80 3e-14
sp|P10559|GP5D_CHLTR VIRULENCE PROTEIN PGP5-D (ORF5) (PROTEIN P-... 79 6e-14
pir||A72319 conserved hypothetical protein - Thermotoga maritima... 78 1e-13
gi|9507284 pGP5-D (gtg start codon) [Plasmid pCHL1] >gi|144469|g... 78 1e-13
sp|Q9X2I3|MIND_THEMA SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 78 1e-13
gi|10957451 chromosome partitioning ATPase, putative, ParA famil... 78 1e-13
pir||E37386 hypothetical protein 5 - Chlamydia trachomatis (sero... 77 2e-13
gi|10803612 sojC [Halobacterium sp. NRC-1] >gi|10803691|ref|NP_0... 77 2e-13
gb|AAD19734.1| (AF124349) ATP-binding protein [Zymomonas mobilis] 77 2e-13
pir||B42465 regulatory protein cII - phage phi-R73 76 3e-13
gi|11498303 cell division inhibitor (minD-1) [Archaeoglobus fulg... 76 4e-13
sp|Q57967|Y547_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0547 >gi... 76 5e-13
pir||F75175 cell division inhibitor (mind-1) PAB1983 - Pyrococcu... 75 7e-13
gb|AAC62540.2| (AF052586) MotR [Pseudomonas aeruginosa] 75 9e-13
gi|10957476 chromosome partitioning ATPase, putative, ParA famil... 75 9e-13
gb|AAC83387.1| (U60522) RepA [Paracoccus versutus] 73 3e-12
pir||S44165 hypothetical protein 7 - Chlamydia trachomatis >gi|5... 73 3e-12
sp|Q57853|Y410_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0410 >gi... 72 7e-12
gi|10956858 RepA replication protein [Sphingomonas aromaticivora... 72 7e-12
sp|P55393|Y4CK_RHISN PUTATIVE REPLICATION PROTEIN A >gi|2182336|... 71 1e-11
pir||B70422 hypothetical protein aq_1404 - Aquifex aeolicus >gi|... 70 3e-11
gb|AAF87250.1|AF283811_1 (AF283811) putative replication protei... 70 3e-11
gb|AAK40399.1| SOJ protein (soj) [Sulfolobus solfataricus] 69 4e-11
gi|10955106 repA [Agrobacterium tumefaciens] >gi|95114|pir||A328... 69 4e-11
pir||S60670 ParA-like partition protein - Alcaligenes eutrophus ... 69 5e-11
emb|CAA61616.1| (X89447) repA protein [Rhizobium leguminosarum] 69 5e-11
gi|10954839 Probable repA gene [Agrobacterium tumefaciens] >gi|2... 69 6e-11
>pir||B75038 soj protein homolog PAB0852 - Pyrococcus abyssi (strain Orsay)
>gi|5458712|emb|CAB50199.1| (AJ248287) SOJ PROTEIN
homolog [Pyrococcus abyssi]
Length = 257
Score = 503 bits (1281), Expect = e-142
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK
Sbjct: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY
Sbjct: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL
Sbjct: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS
Sbjct: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
Query: 241 KAFEKLAREVISIVEGQ 257
KAFEKLAREVISIVEGQ
Sbjct: 241 KAFEKLAREVISIVEGQ 257
>pir||A71125 probable SOJ protein - Pyrococcus horikoshii
>gi|3257176|dbj|BAA29859.1| (AP000003) 256aa long
hypothetical SOJ protein [Pyrococcus horikoshii]
Length = 256
Score = 465 bits (1183), Expect = e-130
Identities = 226/256 (88%), Positives = 248/256 (96%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
MG VISIANQKGGVGKTTIALNLGYSLS+ GKKVLLVD+DPQFNLTFALIGMDV+NYE+K
Sbjct: 1 MGVVISIANQKGGVGKTTIALNLGYSLSKFGKKVLLVDIDPQFNLTFALIGMDVINYENK 60
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
NVGTLMT+ES+VEDVLIE+ EN+HLIPSHLTLSAKEIEI+NTYNRERRLEKALKP++P+Y
Sbjct: 61 NVGTLMTKESTVEDVLIEINENIHLIPSHLTLSAKEIEILNTYNRERRLEKALKPVYPEY 120
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLM MI++ETNEGLRLL
Sbjct: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMKMIKDETNEGLRLL 180
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
GIVPNKFT+QTK+P+ RLKELKELYP+APILTTIPK + IEKAQAEGKSI EY+PNGKAS
Sbjct: 181 GIVPNKFTRQTKIPEKRLKELKELYPEAPILTTIPKTVTIEKAQAEGKSILEYDPNGKAS 240
Query: 241 KAFEKLAREVISIVEG 256
+AFEKLAREVIS+VEG
Sbjct: 241 RAFEKLAREVISLVEG 256
>gi|10954513 SOJ protein [Methanococcus jannaschii]
>gi|2496226|sp|Q60283|YZ24_METJA HYPOTHETICAL PROTEIN
MJECL24 >gi|2129287|pir||G64512 SOJ protein homolog -
Methanococcus jannaschii plasmid pURB800
>gi|1522661|gb|AAC37095.1| (L77118) SOJ protein
[Methanococcus jannaschii]
Length = 259
Score = 270 bits (684), Expect = 9e-72
Identities = 130/257 (50%), Positives = 190/257 (73%), Gaps = 5/257 (1%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
VISIANQKGGVGKTTIALNL ++L+ G L++D+DPQFNL+F ++GM +++Y DKN+G
Sbjct: 3 VISIANQKGGVGKTTIALNLSFTLAEKGYDTLVIDLDPQFNLSFGILGMKLLDYADKNIG 62
Query: 64 TLMTRES----SVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD 119
L+++ S +E+ +I++ + L LIPSHL LSA E ++N Y RE +L+ + I +
Sbjct: 63 ILLSKNSVKKKEIEESIIKINDKLDLIPSHLQLSAVEKMLVNAYAREMKLKNIINQIKEN 122
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREET-NEGLR 178
YDYIIIDN PS+G+FL+NSL ASDY++IP E SYF + G+QLM + + I+E N L+
Sbjct: 123 YDYIIIDNAPSLGLFLINSLVASDYIIIPCEPSYFSIAGVQLMLDTVEEIKESNLNPKLK 182
Query: 179 LLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGK 238
+LG + NK++KQ+K+PQ RL++LK+LYP+ P++ IP+ I +EKA+ EGK +F+++ N
Sbjct: 183 VLGFIFNKYSKQSKIPQKRLEQLKQLYPNIPVIGVIPRTITVEKAEREGKPVFKFDANNP 242
Query: 239 ASKAFEKLAREVISIVE 255
AS AF +LA VI V+
Sbjct: 243 ASVAFSELAEWVIENVK 259
>sp|P37522|SOJ_BACSU SOJ PROTEIN >gi|2127177|pir||I40444 Spo0A activation inhibitor soj
- Bacillus subtilis >gi|467381|dbj|BAA05227.1| (D26185)
regulation of Spo0J and Orf283 (probable) [Bacillus
subtilis] >gi|580906|emb|CAA44408.1| (X62539) unnamed
protein product [Bacillus subtilis]
>gi|2636644|emb|CAB16134.1| (Z99124) soj [Bacillus
subtilis]
Length = 253
Score = 183 bits (460), Expect = 2e-45
Identities = 93/250 (37%), Positives = 157/250 (62%), Gaps = 1/250 (0%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
MG +I+I NQKGGVGKTT ++NLG L+ +GK+VLLVD+DPQ N T L G++ + E
Sbjct: 1 MGKIIAITNQKGGVGKTTTSVNLGACLAYIGKRVLLVDIDPQGNATSGL-GIEKADVEQC 59
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
L+ ++ + ENL +IP+ + L+ EIE++ T +RE RL++AL+ + +Y
Sbjct: 60 VYDILVDDADVIDIIKATTVENLDVIPATIQLAGAEIELVPTISREVRLKRALEAVKQNY 119
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
DYIIID PPS+G+ +N+LTASD V+IP++ Y+ + G+ + N + ++++ N L +
Sbjct: 120 DYIIIDCPPSLGLLTINALTASDSVVIPVQCEYYALEGLSQLLNTVRLVQKHLNTDLMIE 179
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
G++ +T + ++E+K+ + D T IP+ + + +A + GK I Y+P + +
Sbjct: 180 GVLLTMLDARTNLGIQVIEEVKKYFRDKVYKTVIPRNVRLSEAPSHGKPIILYDPRSRGA 239
Query: 241 KAFEKLAREV 250
+ + LA+EV
Sbjct: 240 EVYLDLAKEV 249
>emb|CAC06097.1| (AJ010494) ParA protein [Listeria monocytogenes]
Length = 250
Score = 175 bits (440), Expect = 4e-43
Identities = 93/251 (37%), Positives = 165/251 (65%), Gaps = 5/251 (1%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKN-V 62
+I++ANQKGGVGKTT ++NL SL+ LGKKVLLVD+DPQ N A G+ V E ++ +
Sbjct: 1 MIALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDIDPQGN---ASSGVGVNKGEIEHCI 57
Query: 63 GTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYD 121
++ + +++DVL + + +NL++IP+ + L+ E+E++ +RE RL+KA+ I DYD
Sbjct: 58 YDVLVDDVAIQDVLQKTDLDNLNVIPATIQLAGAEVELVPAISREIRLKKAIDSIRDDYD 117
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
Y+IID PPS+G+ +N+LTA+D VLIP++ Y+ + G+ + N + ++++ NE L++ G
Sbjct: 118 YVIIDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQLLNTIRIVQKHLNEDLQIEG 177
Query: 182 IVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASK 241
++ +T + ++E+K+ + + T IP + + +A + GK I Y+ K ++
Sbjct: 178 VLLTMLDARTNLGIQVIEEVKKYFQNKVFNTIIPWNVRLSEAPSHGKPILLYDAKSKGAE 237
Query: 242 AFEKLAREVIS 252
+ +LA+EV++
Sbjct: 238 VYLELAKEVVA 248
>dbj|BAB07777.1| (AP001520) centromere-like function involved in forespore
chromosome partition [Bacillus halodurans]
Length = 253
Score = 173 bits (435), Expect = 1e-42
Identities = 92/253 (36%), Positives = 158/253 (62%), Gaps = 3/253 (1%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M VISIANQKGGVGKTT A+NL L+ LG++VLLVD+DPQ N T +G++ + D+
Sbjct: 1 MAKVISIANQKGGVGKTTTAVNLSACLAHLGQRVLLVDIDPQGNATSG-VGIEKGDI-DE 58
Query: 61 NVGTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD 119
+ ++ + +DV+ ENL ++PS + LS EIE+++T +RE RL++AL +
Sbjct: 59 CIYDVLVEDVDTQDVIRTTNMENLDVLPSTIQLSGAEIELVSTISREVRLKRALDQVGRK 118
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
YD+I ID PPS+G+ +N+LTASD VLIP++ Y+ + G+ + N + ++++ N L +
Sbjct: 119 YDFIFIDCPPSLGLLTINALTASDSVLIPVQCEYYALEGLSQLLNTVRLVQKHLNTDLAI 178
Query: 180 LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKA 239
G++ +T + + E+K+ + + T IP+ + + +A + G+ I Y+ +
Sbjct: 179 EGVLLTMLDARTNLGIQVIDEVKKYFREKVFDTIIPRNVRLGEAPSHGEPIIRYDAKSRG 238
Query: 240 SKAFEKLAREVIS 252
++ + LA+EV++
Sbjct: 239 AEVYLDLAKEVVA 251
>pir||T36875 probable partitioning or sporulation protein - Streptomyces
coelicolor >gi|5738488|emb|CAB52836.1| (AL109848)
putative partitioning or sporulation protein
[Streptomyces coelicolor A3(2)]
Length = 340
Score = 169 bits (424), Expect = 3e-41
Identities = 91/250 (36%), Positives = 150/250 (59%), Gaps = 2/250 (0%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I++ NQKGGVGKTT +NLG +L+ G++VLLVD DPQ L+ L G++ + +
Sbjct: 87 IIAMCNQKGGVGKTTSTINLGAALAEYGRRVLLVDFDPQGALSVGL-GVNPMELDLTVYN 145
Query: 64 TLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
LM R + ++VL++ N+ L+PS++ LSA E+++++ RE L++ALKP+ DYDY
Sbjct: 146 LLMERGMAADEVLLKTAVPNMDLLPSNIDLSAAEVQLVSEVARESTLQRALKPLMDDYDY 205
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
I+ID PS+G+ VN+LTA+ V++PLE +F + G+ L+ + ++E N L L GI
Sbjct: 206 IVIDCQPSLGLLTVNALTAAHKVIVPLECEFFALRGVALLTETIEKVQERLNPDLELDGI 265
Query: 183 VPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKA 242
+ + +T + L + E + D T I + + + G+ I Y N + A
Sbjct: 266 LATMYDSRTVHSREVLARVVEAFDDHVYHTVIGRTVRFPETTVAGEPITTYASNSVGAAA 325
Query: 243 FEKLAREVIS 252
+ +LAREV++
Sbjct: 326 YRQLAREVLA 335
>pir||C70504 hypothetical protein Rv1708 - Mycobacterium tuberculosis (strain
H37RV) >gi|2326751|emb|CAB10965.1| (Z98268) hypothetical
protein Rv1708 [Mycobacterium tuberculosis]
Length = 318
Score = 164 bits (412), Expect = 7e-40
Identities = 92/251 (36%), Positives = 148/251 (58%), Gaps = 6/251 (2%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYE-DKNV 62
VI++ NQKGGVGKTT +NLG +L G++VLLVD+DPQ L+ G+ V +YE DK +
Sbjct: 66 VIAMCNQKGGVGKTTSTINLGAALGEYGRRVLLVDMDPQGALS---AGLGVPHYELDKTI 122
Query: 63 -GTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
L+ S++DVLI +N+ L+PS++ LSA EI+++N RE+ L +AL P+ Y
Sbjct: 123 HNVLVEPRVSIDDVLIHSRVKNMDLVPSNIDLSAAEIQLVNEVGREQTLARALYPVLDRY 182
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
DY++ID PS+G+ VN L +D V+IP E +F + G+ L+ + + +R+ N L +
Sbjct: 183 DYVLIDCQPSLGLLTVNGLACTDGVIIPTECEFFSLRGLALLTDTVDKVRDRLNPKLDIS 242
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
GI+ ++ +T + + + E + D T I + + + G+ I + P +
Sbjct: 243 GILITRYDPRTVNSREVMARVVERFGDLVFDTVITRTVRFPETSVAGEPITTWAPKSAGA 302
Query: 241 KAFEKLAREVI 251
A+ LARE+I
Sbjct: 303 LAYRALARELI 313
>pir||A82577 chromosome partitioning protein XF2282 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107443|gb|AAF85081.1|AE004040_6 (AE004040)
chromosome partitioning protein [Xylella fastidiosa]
Length = 264
Score = 161 bits (404), Expect = 6e-39
Identities = 91/251 (36%), Positives = 142/251 (56%), Gaps = 2/251 (0%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M +I+IANQKGGVGKTT A+NL L R ++VLLVD+D Q N T G+D
Sbjct: 1 MARIIAIANQKGGVGKTTTAVNLAAGLVRASERVLLVDLDSQGNATMGS-GVDKNGLISS 59
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
L+ E SV + E L+P ++ L+A I++M RE+RL++AL PI +Y
Sbjct: 60 TCEVLLG-ERSVAESRARAPEGFDLLPGNIDLTAAAIQLMEQSEREQRLKRALSPIRHEY 118
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
D+I+ID PP++ + VN+LTA+D V++P++ Y+ + G+ + + +R N L +
Sbjct: 119 DFILIDCPPALSLLTVNALTAADSVIVPMQCEYYALEGLSALLETIEALRVNLNPRLEIE 178
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
G++ F + + A EL E + D T +P+ + + +A + GKSI Y+ + S
Sbjct: 179 GVLRTMFDIRNNLANAVSTELTEHFGDKVFRTIVPRNVRLAEAPSYGKSIVGYDGASRGS 238
Query: 241 KAFEKLAREVI 251
A+ LA EVI
Sbjct: 239 VAYLGLANEVI 249
>pir||S72958 hypothetical protein u0247b - Mycobacterium leprae
>gi|467153|gb|AAA50917.1| (U00021) u0247b [Mycobacterium
leprae]
Length = 354
Score = 161 bits (402), Expect = 1e-38
Identities = 89/251 (35%), Positives = 146/251 (57%), Gaps = 6/251 (2%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYE-DKNV 62
V+++ NQKGGVGKTT +NLG +L+ G++VLLVD+DPQ L+ G+ V +YE D+ +
Sbjct: 102 VVAMCNQKGGVGKTTSTINLGAALTEFGRRVLLVDIDPQGALS---AGLGVPHYELDRTI 158
Query: 63 GTLMTRES-SVEDVLIEVEEN-LHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
LM S++DVLI L L+PS++ LSA EI+++N RE+ L +AL P+ Y
Sbjct: 159 HNLMVEPLVSIDDVLIHTRVRYLDLVPSNIDLSAAEIQLVNEVGREQTLARALHPVLDRY 218
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
DY++ID PS+G+ VN L ++ V+IP E +F + G+ L+ + + +R+ N L +
Sbjct: 219 DYVLIDCQPSLGLLTVNGLACAEGVVIPTECEFFSLRGLALLTDTVDKVRDRLNPKLEIS 278
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
GI+ ++ +T + + + E + D T I + + + G+ I + P +
Sbjct: 279 GILITRYDPRTVNAREVMARVVERFGDLVFDTVITRTVRFPETSVAGEPITTWAPKSGGA 338
Query: 241 KAFEKLAREVI 251
+A+ LA E I
Sbjct: 339 RAYRALACEFI 349
>emb|CAB08277.1| (Z95117) hypothetical protein MLC1351.06c [Mycobacterium leprae]
Length = 250
Score = 157 bits (394), Expect = 9e-38
Identities = 88/248 (35%), Positives = 143/248 (57%), Gaps = 6/248 (2%)
Query: 7 IANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYE-DKNVGTL 65
+ NQKGGVGKTT +NLG +L+ G++VLLVD+DPQ L+ G+ V +YE D+ + L
Sbjct: 1 MCNQKGGVGKTTSTINLGAALTEFGRRVLLVDIDPQGALS---AGLGVPHYELDRTIHNL 57
Query: 66 MTRES-SVEDVLIEVEEN-LHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYI 123
M S++DVLI L L+PS++ LSA EI+++N RE+ L +AL P+ YDY+
Sbjct: 58 MVEPLVSIDDVLIHTRVRYLDLVPSNIDLSAAEIQLVNEVGREQTLARALHPVLDRYDYV 117
Query: 124 IIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIV 183
+ID PS+G+ VN L ++ V+IP E +F + G+ L+ + + +R+ N L + GI+
Sbjct: 118 LIDCQPSLGLLTVNGLACAEGVVIPTECEFFSLRGLALLTDTVDKVRDRLNPKLEISGIL 177
Query: 184 PNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAF 243
++ +T + + + E + D T I + + + G+ I + P ++A+
Sbjct: 178 ITRYDPRTVNAREVMARVVERFGDLVFDTVITRTVRFPETSVAGEPITTWAPKSGGARAY 237
Query: 244 EKLAREVI 251
LA E I
Sbjct: 238 RALACEFI 245
>pir||B71346 probable SpoOJ regulator (soj) - syphilis spirochete
>gi|3322545|gb|AAC65260.1| (AE001208) SpoOJ regulator
(soj) [Treponema pallidum]
Length = 253
Score = 156 bits (391), Expect = 2e-37
Identities = 88/254 (34%), Positives = 143/254 (55%), Gaps = 8/254 (3%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-IGMDVVNYED 59
MG + NQKGGVGKTT A+NLG L+ GKK LLVD DPQ N++ L + + Y+
Sbjct: 1 MGKTLVFVNQKGGVGKTTSAINLGAYLALAGKKTLLVDFDPQGNMSSGLGLARGLTVYD- 59
Query: 60 KNVGTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFP 118
L+ ++ + VL NL IP+ + LS +E+++ +RE L+K L +
Sbjct: 60 -----LLAGKAHINSVLRTTPVHNLFAIPASIDLSGATVELVDEQDRELYLKKILAEVKD 114
Query: 119 DYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLR 178
YD+I+ID PPS+GI +N L A++ V IPL+ YF + G+ L+ + ++ N L
Sbjct: 115 TYDFILIDCPPSLGILTLNGLAAANEVFIPLQCEYFALEGLTLLLQTVKRVQSGLNTALS 174
Query: 179 LLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGK 238
+ GI + +TK+ Q +K++ + D T IP+ + + +A + G I Y+
Sbjct: 175 IGGIFFTMYDTRTKLAQEVVKQVTTYFGDKVFNTIIPRNVKLSEAPSHGLPISSYDAQCA 234
Query: 239 ASKAFEKLAREVIS 252
++++EKLARE+++
Sbjct: 235 GARSYEKLAREIVA 248
>pir||D81426 parA family protein Cj0100 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967594|emb|CAB72584.1|
(AL139074) parA family protein [Campylobacter jejuni]
Length = 261
Score = 154 bits (386), Expect = 8e-37
Identities = 87/262 (33%), Positives = 151/262 (57%), Gaps = 13/262 (4%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M +I+IANQKGGVGKTT A+NL SL+ KKVLL+DVDPQ N T L G + NYE
Sbjct: 1 MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQANATTGL-GFNRNNYE-Y 58
Query: 61 NVGTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERR--LEKALKPIF 117
N+ + + D++++ E LHL PS++ L E E+ N E++ L+ ++ +
Sbjct: 59 NIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGENNEKKMLLKNQIQEVI 118
Query: 118 PDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGL 177
+YD+IIID+PP++G +N+ ASD V+IP++ ++ + G+ ++ N + +I++ N L
Sbjct: 119 DEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGVAMVLNTIKIIKKTINSKL 178
Query: 178 RLLGIVPNKFTKQTKVPQARLKELKELYP--------DAPILTTIPKAIAIEKAQAEGKS 229
R+ G +P ++ Q + + + +LK+ + + IP+ + + ++ + GK
Sbjct: 179 RVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNEDDFIVIPRNVKLAESPSFGKP 238
Query: 230 IFEYEPNGKASKAFEKLAREVI 251
I Y+ S A++ LA ++
Sbjct: 239 IILYDIKSPGSVAYQNLAYSIL 260
>pir||F70153 conserved hypothetical protein BB0431 - Lyme disease spirochete
>gi|2688340|gb|AAC66805.1| (AE001148) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 250
Score = 152 bits (379), Expect = 5e-36
Identities = 87/259 (33%), Positives = 150/259 (57%), Gaps = 19/259 (7%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+IS+ NQKGGVGKTT A+N+ YS++ L KK+LL+D+D Q N T N
Sbjct: 3 IISVINQKGGVGKTTSAINISYSMTLLNKKILLIDIDSQGNST-----------SGTNTS 51
Query: 64 TLMTRESSVEDVLIEVEE------NLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIF 117
+ +SS E + +++ L +IPS + L+ E E++N +RE L+ AL
Sbjct: 52 KHIAEKSSYELINKKIKVKPLNHFGLDIIPSSIKLALLEKELINELSRENFLKNALTLYE 111
Query: 118 PD-YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEG 176
D YD+IIID PP++ I +N+L AS+Y+LIP+E +F G+ + + ++ ++ + N+
Sbjct: 112 KDKYDFIIIDCPPTLSILTINALIASNYLLIPIETEFFAFEGINQLIDTITTVK-QINKN 170
Query: 177 LRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPN 236
L + G+ NK+ + K + + LK+++ + + T I K I I K+Q ++EY+
Sbjct: 171 LEIAGVFINKYDIRNKSKEKYVSSLKKVFKEKLLNTKIRKNITISKSQEAKMPVYEYDKE 230
Query: 237 GKASKAFEKLAREVISIVE 255
A+K F +L++E+I+ ++
Sbjct: 231 SNAAKDFLELSKEIINKIK 249
>pir||C64662 regulatory protein spo0J - Helicobacter pylori (strain 26695)
>gi|2314295|gb|AAD08185.1| (AE000620) SpoOJ regulator
(soj) [Helicobacter pylori 26695]
Length = 264
Score = 150 bits (374), Expect = 2e-35
Identities = 91/263 (34%), Positives = 153/263 (57%), Gaps = 14/263 (5%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-IGMDVVNYED 59
M +I++ANQKGGVGKTT A+NL SL+ KK+LL+D DPQ N T +L D ++Y+
Sbjct: 2 MSEIIAVANQKGGVGKTTTAVNLAASLAVHEKKILLIDFDPQANATSSLGFRRDKIDYDI 61
Query: 60 KNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERR----LEKALKP 115
+V L+ R+ + +L L L+PS+L L+ E ++ + +R L+ AL+
Sbjct: 62 YHV--LIGRKQISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALES 119
Query: 116 IFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNE 175
+ YDYIIID+PP++G +NSL+A+ V+IP++ +F + G +L+ N + M+++ TN
Sbjct: 120 VVGLYDYIIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIRMLQKSTNP 179
Query: 176 GLRLLGIVPNKFTKQTKVPQARLKEL-----KELYPDAPI--LTTIPKAIAIEKAQAEGK 228
L++ G +P Q + + L EL E + D+ IPK++ + ++ + GK
Sbjct: 180 KLKIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATGEYIMIPKSVKLAESPSFGK 239
Query: 229 SIFEYEPNGKASKAFEKLAREVI 251
I Y+ S A++KLA+ ++
Sbjct: 240 PILLYDIKSNGSIAYQKLAQSIL 262
>pir||A71853 hypothetical protein jhp1067 - Helicobacter pylori (strain J99)
>gi|4155660|gb|AAD06647.1| (AE001534) putative
[Helicobacter pylori J99]
Length = 264
Score = 150 bits (374), Expect = 2e-35
Identities = 91/263 (34%), Positives = 152/263 (57%), Gaps = 14/263 (5%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-IGMDVVNYED 59
M +I++ANQKGGVGKTT A+NL SL+ KK+LL+D DPQ N T +L D ++Y+
Sbjct: 2 MNEIIAVANQKGGVGKTTTAVNLAASLAAHEKKILLIDFDPQANATSSLGFRRDKIDYDI 61
Query: 60 KNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERR----LEKALKP 115
+V L+ R+ + +L L L+PS+L L+ E ++ + +R L+ AL
Sbjct: 62 YHV--LIGRKQISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALGS 119
Query: 116 IFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNE 175
+ YDYIIID+PP++G +NSL+A+ V+IP++ +F + G +L+ N + M+++ TN
Sbjct: 120 VVKLYDYIIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIRMLQKSTNP 179
Query: 176 GLRLLGIVPNKFTKQTKVPQARLKEL-----KELYPDAPI--LTTIPKAIAIEKAQAEGK 228
L++ G +P Q + + L EL E + D+ IPK++ + ++ + GK
Sbjct: 180 KLKIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATGEYIMIPKSVKLAESPSFGK 239
Query: 229 SIFEYEPNGKASKAFEKLAREVI 251
I Y+ S A++KLA+ ++
Sbjct: 240 PILLYDIKSNGSIAYQKLAQSIL 262
>pir||E82035 ParA family protein VC2773 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9657375|gb|AAF95912.1| (AE004343)
ParA family protein [Vibrio cholerae]
Length = 257
Score = 149 bits (373), Expect = 3e-35
Identities = 81/252 (32%), Positives = 145/252 (57%), Gaps = 3/252 (1%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
MG +++IANQKGGVGKTT +NL S++ +KVL+VD+DPQ N T A G+D D
Sbjct: 1 MGKIVAIANQKGGVGKTTTCINLAASMAATKRKVLVVDLDPQGNATMAS-GVDKYQV-DS 58
Query: 61 NVGTLMTRESSVEDVLI-EVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD 119
L+ ++ + V+ + + LI ++ ++A EI++M + RE RL+ AL + +
Sbjct: 59 TAYELLVEDAPFDQVVCRKTTGHYDLIAANGDVTAAEIKLMEVFAREVRLKNALASVRDN 118
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
YD+I ID PPS+ + +N++ A+D VL+P++ YF + G+ + + +S + N+ L++
Sbjct: 119 YDFIFIDCPPSLNLLTINAMAAADSVLVPMQCEYFALEGLTALMDTISKLAAVVNDNLKI 178
Query: 180 LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKA 239
GI+ + + ++ +LK+ + T IP+ + + +A + GK Y+
Sbjct: 179 EGILRTMYDPRNRLANEVSDQLKKHFGSKVYRTVIPRNVRLAEAPSHGKPAMYYDKQSAG 238
Query: 240 SKAFEKLAREVI 251
+KA+ LA E++
Sbjct: 239 AKAYLALAGEML 250
>pir||C81999 parA family protein NMA0076 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7378849|emb|CAB83392.1|
(AL162752) parA family protein [Neisseria meningitidis
Z2491]
Length = 257
Score = 147 bits (367), Expect = 1e-34
Identities = 83/255 (32%), Positives = 148/255 (57%), Gaps = 3/255 (1%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+++IANQKGGVGKTT +NL SL+ GK+VL+VD+DPQ N T G+D + + V
Sbjct: 5 ILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQGNATTGS-GIDKASLQS-GVY 62
Query: 64 TLMTRESSVEDVLIEVEENLH-LIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
++ ++ V+ + +E + ++ ++ L+ EIE++ RE RL+ ALK + DYD+
Sbjct: 63 QVLLGDADVKSAAVRSKEGGYGVLGANRALAGAEIELVQEIAREVRLKNALKAVAEDYDF 122
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
I+ID PPS+ + +N L A+ V++P+ Y+ + G+ + + IR+ N L + GI
Sbjct: 123 ILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDITGI 182
Query: 183 VPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKA 242
V + ++++ ++L+ + D T IP+ I + +A + G + Y+ K +KA
Sbjct: 183 VRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKGAKA 242
Query: 243 FEKLAREVISIVEGQ 257
+ LA E+++ V G+
Sbjct: 243 YLALADELMARVSGK 257
>pir||D81227 ParA family protein NMB0191 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7225411|gb|AAF40648.1|
(AE002376) ParA family protein [Neisseria meningitidis
MC58]
Length = 257
Score = 146 bits (364), Expect = 3e-34
Identities = 83/255 (32%), Positives = 146/255 (56%), Gaps = 3/255 (1%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+++IANQKGGVGKTT +NL SL+ GK+VL+VD+DPQ N T G+D + V
Sbjct: 5 ILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQGNATTGS-GIDKAGLQS-GVY 62
Query: 64 TLMTRESSVEDVLIEVEENLH-LIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
++ ++ V+ + +E + ++ ++ L+ EIE++ RE RL+ ALK + DYD+
Sbjct: 63 QVLLGDADVQSAAVRSKEGGYAVLGANRALAGAEIELVQEIAREVRLKNALKAVEEDYDF 122
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
I+ID PPS+ + +N L A+ V++P+ Y+ + G+ + + IR+ N L + GI
Sbjct: 123 ILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDITGI 182
Query: 183 VPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKA 242
V + ++++ ++L+ + D T IP+ I + +A + G + Y+ K +KA
Sbjct: 183 VRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKGTKA 242
Query: 243 FEKLAREVISIVEGQ 257
+ LA E+ + V G+
Sbjct: 243 YLALADELAARVSGK 257
>sp|O05189|PARA_CAUCR CHROMOSOME PARTITIONING PROTEIN PARA >gi|1916914|gb|AAB51267.1|
(U87804) ParA [Caulobacter crescentus]
Length = 266
Score = 145 bits (361), Expect = 7e-34
Identities = 89/252 (35%), Positives = 142/252 (56%), Gaps = 6/252 (2%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
V++IANQKGGVGKTT A+NLG + + LG++VLL+D DPQ N + L G+
Sbjct: 8 VLAIANQKGGVGKTTTAINLGTAWA-LGERVLLIDADPQGNCSTGL-GIGRTQRRTTLYD 65
Query: 64 TLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD--Y 120
LM E+ V D ++ E L +IP+ LS EIE+ T R RL AL+ I + Y
Sbjct: 66 VLMG-EAPVVDAAVKTELPGLDVIPADADLSGVEIELGQTARRSYRLRDALEAIRANGPY 124
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
Y++ID PPS+ + VN++TA+D V +PL+ +F + G+ + + + N L +
Sbjct: 125 TYVLIDCPPSLNVLTVNAMTAADAVFVPLQCEFFALEGLTQLMRTIERVARSLNPRLEIQ 184
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
G+V + ++ + + K+++ + D IP+ + + +A + GK + Y+ S
Sbjct: 185 GVVLTIYDRRNSLSEQVAKDVRAHFGDKVYDAVIPRNVRVSEAPSFGKPVLLYDLKCAGS 244
Query: 241 KAFEKLAREVIS 252
+A+ KLAREVIS
Sbjct: 245 QAYLKLAREVIS 256
>pir||B82950 chromosome partitioning protein Soj PA5563 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951904|gb|AAG08948.1|AE004968_2 (AE004968)
chromosome partitioning protein Soj [Pseudomonas
aeruginosa]
Length = 262
Score = 143 bits (357), Expect = 2e-33
Identities = 83/251 (33%), Positives = 136/251 (54%), Gaps = 1/251 (0%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M V +IANQKGGVGKTT +NL SL ++VLL+D+DPQ N T G+D N E
Sbjct: 1 MAKVFAIANQKGGVGKTTTCINLAASLVATKRRVLLLDLDPQGNATTGS-GIDKHNLEHS 59
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
L + E + L+P++ L+A E+ ++ +E RL AL PI +Y
Sbjct: 60 IYDVLTGECNLAEAMQFSEHGGYQLLPANRDLTAAEVVLLEMDMKENRLRNALAPIRENY 119
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
DYI+ID PPS+ + VN+LTA+D V+IP++ Y+ + G+ + N + I + N L++
Sbjct: 120 DYILIDCPPSLSMLTVNALTAADGVIIPMQCEYYALEGLTDLMNSIQRIGQLLNPTLKIE 179
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
G++ + + + +L+E + D T IP+ + + +A + G Y+ + +
Sbjct: 180 GLLRTMYDPRISLTNDVSAQLQEHFGDTLYSTVIPRNVRLAEAPSFGMPALVYDKQSRGA 239
Query: 241 KAFEKLAREVI 251
A+ LA E++
Sbjct: 240 IAYLALAGELV 250
>pir||F70851 probable parB protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2808703|emb|CAA16231.1| (AL021426) parB
[Mycobacterium tuberculosis]
Length = 347
Score = 142 bits (354), Expect = 4e-33
Identities = 76/255 (29%), Positives = 141/255 (54%), Gaps = 14/255 (5%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
V++IANQKGGVGKTT A+N+ +L+ G K L++D+DPQ N + AL D+ G
Sbjct: 86 VLTIANQKGGVGKTTTAVNIAAALAVQGLKTLVIDLDPQGNASTAL------GITDRQSG 139
Query: 64 TLMTRESSVEDVLIEV-------EENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPI 116
T + E + +V + E L IP+ + L+ EIE+++ RE RL AL +
Sbjct: 140 TPSSYEMLIGEVSLHTALRRSPHSERLFCIPATIDLAGAEIELVSMVARENRLRTALAAL 199
Query: 117 FP-DYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNE 175
D+DY+ +D PPS+G+ +N+L A+ V+IP++ Y+ + G+ + + M++ N
Sbjct: 200 DNFDFDYVFVDCPPSLGLLTINALVAAPEVMIPIQCEYYALEGVSQLMRNIEMVKAHLNP 259
Query: 176 GLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEP 235
L + ++ + +TK+ E+++ + + T IP+++ + +A +I +Y+P
Sbjct: 260 QLEVTTVILTMYDGRTKLADQVADEVRQYFGSKVLRTVIPRSVKVSEAPGYSMTIIDYDP 319
Query: 236 NGKASKAFEKLAREV 250
+ + ++ +RE+
Sbjct: 320 GSRGAMSYLDASREL 334
>gb|AAF16005.1|AF187159_5 (AF187159) ParA [Streptomyces coelicolor A3(2)]
Length = 357
Score = 141 bits (352), Expect = 8e-33
Identities = 79/249 (31%), Positives = 145/249 (57%), Gaps = 4/249 (1%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
V+ +ANQKGGVGKTT +NL SL+ G +VL+VD+DPQ N + AL G+D + + ++
Sbjct: 82 VMVVANQKGGVGKTTTTVNLAASLALHGARVLVVDLDPQGNASTAL-GIDH-HADVPSIY 139
Query: 64 TLMTRESSVEDVLIEVE--ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYD 121
++ + +V+ V E L P+ + L+ EIE+++ RE RL++A+ D
Sbjct: 140 DVLVESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLQRAITAYEQPLD 199
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
YI+ID PPS+G+ VN+L A VLIP++ Y+ + G+ + + ++R N L +
Sbjct: 200 YILIDCPPSLGLLTVNALVAGQEVLIPIQCEYYALEGLGQLLRNVDLVRGHLNPTLHVST 259
Query: 182 IVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASK 241
I+ + +T++ E++ + + + T+IP+++ I +A + G+++ Y+P +
Sbjct: 260 ILLTMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSYGQTVLTYDPGSSGAL 319
Query: 242 AFEKLAREV 250
++ + ARE+
Sbjct: 320 SYLEAAREI 328
>pir||B71714 soj protein (soj) RP058 - Rickettsia prowazekii
>gi|3860628|emb|CAA14529.1| (AJ235270) SOJ PROTEIN (soj)
[Rickettsia prowazekii]
Length = 255
Score = 141 bits (351), Expect = 1e-32
Identities = 77/250 (30%), Positives = 143/250 (56%), Gaps = 5/250 (2%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKN-V 62
+ISI NQKGGV KTT +NL + + + KK+L++D+DPQ N + G ++ + KN +
Sbjct: 3 IISIVNQKGGVAKTTTTVNLATAFASVNKKILVIDLDPQGNSS---TGFGIIQQQRKNTI 59
Query: 63 GTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYD 121
++T ++D +I NL +I S+ LSA E+++ RE L K L+ + YD
Sbjct: 60 YQVLTNLIELKDAIIATNIPNLEIITSNTNLSAAELDLTTLKEREYVLMKLLEEVKILYD 119
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
YIIID PPS+ + VN+L ASD VLIP++ ++ + G+ + + ++ ++ N +++ G
Sbjct: 120 YIIIDCPPSLNLLTVNALVASDEVLIPMQCDFYSLEGLSHLLKTIEIVEKKLNPKIKIAG 179
Query: 182 IVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASK 241
I+ + K+ ++ + ++++ + T IP+ I + +A + GK Y+ +
Sbjct: 180 ILFTMYDKRNRLTEQVEDDVRKCLGELVFKTVIPRNIKLSEAPSYGKPAILYDYKCAGAV 239
Query: 242 AFEKLAREVI 251
A+ +L +E++
Sbjct: 240 AYIELTKEIL 249
>gb|AAC03484.1| (AF031590) Soj-like [Streptomyces coelicolor A3(2)]
Length = 255
Score = 140 bits (349), Expect = 2e-32
Identities = 78/246 (31%), Positives = 143/246 (57%), Gaps = 4/246 (1%)
Query: 7 IANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTLM 66
+ANQKGGVGKTT +NL SL+ G +VL+VD+DPQ N + AL G+D + + ++ ++
Sbjct: 3 VANQKGGVGKTTTTVNLAASLALHGARVLVVDLDPQGNASTAL-GIDH-HADVPSIYDVL 60
Query: 67 TRESSVEDVLIEVE--ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYII 124
+ +V+ V E L P+ + L+ EIE+++ RE RL++A+ DYI+
Sbjct: 61 VESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLQRAITAYEQPLDYIL 120
Query: 125 IDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVP 184
ID PPS+G+ VN+L A VLIP++ Y+ + G+ + + ++R N L + I+
Sbjct: 121 IDCPPSLGLLTVNALVAGQEVLIPIQCEYYALEGLGQLLRNVDLVRGHLNPTLHVSTILL 180
Query: 185 NKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFE 244
+ +T++ E++ + + + T+IP+++ I +A + G+++ Y+P + ++
Sbjct: 181 TMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSYGQTVLTYDPGSSGALSYL 240
Query: 245 KLAREV 250
+ ARE+
Sbjct: 241 EAAREI 246
>pir||T36573 probable partitioning or sporulation protein - Streptomyces
coelicolor >gi|4808382|emb|CAB42705.1| (AL049826)
putative partitioning or sporulation protein
[Streptomyces coelicolor A3(2)]
Length = 275
Score = 140 bits (349), Expect = 2e-32
Identities = 78/246 (31%), Positives = 143/246 (57%), Gaps = 4/246 (1%)
Query: 7 IANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTLM 66
+ANQKGGVGKTT +NL SL+ G +VL+VD+DPQ N + AL G+D + + ++ ++
Sbjct: 3 VANQKGGVGKTTTTVNLAASLALHGARVLVVDLDPQGNASTAL-GIDH-HADVPSIYDVL 60
Query: 67 TRESSVEDVLIEVE--ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYII 124
+ +V+ V E L P+ + L+ EIE+++ RE RL++A+ DYI+
Sbjct: 61 VESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLQRAITAYEQPLDYIL 120
Query: 125 IDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVP 184
ID PPS+G+ VN+L A VLIP++ Y+ + G+ + + ++R N L + I+
Sbjct: 121 IDCPPSLGLLTVNALVAGQEVLIPIQCEYYALEGLGQLLRNVDLVRGHLNPTLHVSTILL 180
Query: 185 NKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFE 244
+ +T++ E++ + + + T+IP+++ I +A + G+++ Y+P + ++
Sbjct: 181 TMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSYGQTVLTYDPGSSGALSYL 240
Query: 245 KLAREV 250
+ ARE+
Sbjct: 241 EAAREI 246
>sp|P31856|YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN GIDB-UNCI INTERGENIC REGION
>gi|94916|pir||S18097 regulatory protein spo0J homolog -
Pseudomonas putida >gi|45713|emb|CAA44421.1| (X62540)
unnamed protein product [Pseudomonas putida]
Length = 263
Score = 138 bits (343), Expect = 9e-32
Identities = 83/253 (32%), Positives = 139/253 (54%), Gaps = 5/253 (1%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYE-D 59
M V +IANQKGGVGKTT +NL SL+ ++VLL+D+DPQ N T +G V +E +
Sbjct: 1 MAKVFAIANQKGGVGKTTTCINLAASLAATKRRVLLIDLDPQGNAT---MGSGVDKHELE 57
Query: 60 KNVGTLMTRESSVEDVLIEVEEN-LHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFP 118
+V L+ E + + E L+P++ L+A E+ ++ +E RL AL PI
Sbjct: 58 HSVYDLLIGECDLAQAMHYSEHGGFQLLPANRDLTAAEVVLLEMQVKESRLRNALAPIRD 117
Query: 119 DYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLR 178
+YDYI+ID PPS+ + +N+L ASD V+IP++ Y+ + G+ + + + I N L+
Sbjct: 118 NYDYILIDCPPSLSMLTLNALVASDGVIIPMQCEYYALEGLSDLVDNIKRIAARLNPELK 177
Query: 179 LLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGK 238
+ G++ + + + +LKE + T IP+ I + +A + G Y+ +
Sbjct: 178 IEGLLRTMYDPRLSLNNDVSAQLKEHFGPQLYDTVIPRNIRLAEAPSFGMPALAYDKQSR 237
Query: 239 ASKAFEKLAREVI 251
+ A+ LA E++
Sbjct: 238 GALAYLALAGELV 250
>pir||F70595 hypothetical protein Rv3213c - Mycobacterium tuberculosis (strain
H37RV) >gi|2072672|emb|CAB08303.1| (Z95120) hypothetical
protein Rv3213c [Mycobacterium tuberculosis]
Length = 266
Score = 136 bits (339), Expect = 3e-31
Identities = 82/251 (32%), Positives = 139/251 (54%), Gaps = 9/251 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK--- 60
V+++ANQKGGV KTT +LG ++ G++VLLVD+DPQ LTF+L G D DK
Sbjct: 6 VLAVANQKGGVAKTTTVASLGAAMVEKGRRVLLVDLDPQGCLTFSL-GQD----PDKLPV 60
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
+V ++ E VL+ E + L+P+++ L+ E ++ RE L++AL +
Sbjct: 61 SVHEVLLGEVEPNAVLVTTMEGMTLLPANIDLAGAEAMLLMRAGREYALKRALAKFSDRF 120
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
D +IID PPS+G+ +N LTA+D ++PL+ G+ ++ +++ TN LRLL
Sbjct: 121 DVVIIDCPPSLGVLTLNGLTAADKAIVPLQCEMLAHRGVGQFLRTVADVQQITNPNLRLL 180
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
G +P + +T + L ++ + Y + IP+ + +A A G S+ N K +
Sbjct: 181 GALPTLYDSRTTHTRDVLLDVADRYDLQVLAPPIPRTVRFAEASASGSSVMAGRKN-KGA 239
Query: 241 KAFEKLAREVI 251
A+ +LA+ ++
Sbjct: 240 VAYRELAQALL 250
>gb|AAB53135.1| (L39923) ORF278; hypothetical 30.3 Kd protein; similar to
hypothetical protein 27.5 kd in SPO0J-GIDB intergenic
region of B. subtilis and to 27.5 kd protein in
GIDB-UNCI intergenic region of P. putida; putative
[Mycobacterium leprae]
Length = 278
Score = 136 bits (339), Expect = 3e-31
Identities = 81/261 (31%), Positives = 141/261 (53%), Gaps = 26/261 (9%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+ +IANQKGGVGKTT A+NL +L+ G K L++D+DPQ N + AL +
Sbjct: 19 LFTIANQKGGVGKTTTAVNLAAALALQGLKALVIDLDPQGNASTAL-----------GIS 67
Query: 64 TLMTRESSVEDVLI------------EVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEK 111
+R S DVLI E L +P+ + L+ EIE+++ RE RL
Sbjct: 68 NRQSRVFSSYDVLIGEVSLQTALRCSPYNERLFCLPAAIDLAGAEIELVSMVARENRLRT 127
Query: 112 ALKPIFP-DYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGM-QLMFNLMSMI 169
AL + D+DY+ ID PPS+G+ +N+L A+ V+IP++ Y+ + G+ QLM N+ M+
Sbjct: 128 ALTELNDLDFDYVFIDCPPSLGLLTINALVAAPEVIIPIQCEYYALEGVSQLMCNI-EMV 186
Query: 170 REETNEGLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKS 229
+ N L + ++ + +TK+ +E++ + + T IP+++ + +A +
Sbjct: 187 KAHLNPQLEVTTVILTMYDGRTKLADQVAEEVRRYFGTKVLQTVIPRSVKVSEAPGYSMT 246
Query: 230 IFEYEPNGKASKAFEKLAREV 250
I +Y+P + + ++ +RE+
Sbjct: 247 IIDYDPGSRGAMSYLDASREL 267
>gb|AAF32419.1| (AF069392) SOJ-like protein [Vibrio parahaemolyticus]
Length = 259
Score = 130 bits (324), Expect = 1e-29
Identities = 74/215 (34%), Positives = 130/215 (60%), Gaps = 4/215 (1%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-IGMDVVNYEDKNV 62
V S+ANQKGGVGKTT + L LS+ G +VL+VD DP +LT L D V+ ++
Sbjct: 3 VWSVANQKGGVGKTTSTVTLAGLLSQKGHRVLMVDTDPHASLTTYLGYDSDTVSSSLFDL 62
Query: 63 GTLMT-RESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
L T +V+ +++E E E + +IP+H++L+ + + N L++AL+ + DY
Sbjct: 63 FQLKTFTRDTVKPLILETELEGMDIIPAHMSLATLDRVMGNRSGMGLILKRALQAVSQDY 122
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
DY++ID PP +G+ +VN+L ASD +LIP++ + + G++ M ++++++ +G ++
Sbjct: 123 DYVLIDCPPILGVMMVNALAASDRILIPVQTEFLAMKGLERMIRTLTIMQKSRPDGFKVT 182
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIP 215
IVP + K+T+ L +LK+ YP+ + +P
Sbjct: 183 -IVPTMYDKRTRASLQTLTQLKKDYPNQVWTSAVP 216
>emb|CAB89207.1| (AJ277593) putative partitioning protein [Thermus thermophilus]
Length = 248
Score = 129 bits (320), Expect = 4e-29
Identities = 80/251 (31%), Positives = 137/251 (53%), Gaps = 13/251 (5%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGT 64
I++ANQKGGVGKTT A+NL L+RLGK+VLLVD+DPQ N T L G+ ++ V
Sbjct: 9 IALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGL-GVRA----ERGVYH 63
Query: 65 LMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYII 124
L+ E + L+ + HL+P+ L +E+ L YD ++
Sbjct: 64 LLQGEPL--EGLVHPVDGFHLLPATPDLVGATVELAGAPRPAEVLRDE------GYDLVL 115
Query: 125 IDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVP 184
+D PPS+ +N+L A++ V++P++ Y+ + G+ + + +R N LRLLGI+
Sbjct: 116 LDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLAHLEEVRAGLNPSLRLLGILV 175
Query: 185 NKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFE 244
+ +T + Q +L+ + + T IP+ + + +A + GK+I ++ P + A+
Sbjct: 176 TMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYR 235
Query: 245 KLAREVISIVE 255
+LA EV++ V+
Sbjct: 236 RLAEEVMARVQ 246
>pir||G82122 ParA family protein VC2061 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9656607|gb|AAF95207.1| (AE004280)
ParA family protein [Vibrio cholerae]
Length = 258
Score = 125 bits (312), Expect = 4e-28
Identities = 73/216 (33%), Positives = 125/216 (57%), Gaps = 6/216 (2%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
V S+ANQKGGVGKTT + L LS+ GK+VLLVD DP +LT +G D
Sbjct: 3 VWSVANQKGGVGKTTTTITLAGLLSQQGKRVLLVDTDPHASLT-TYLGYDSDGVPASLFD 61
Query: 64 TLMTRE---SSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD 119
RE +SV+ +++ + + + LIP+H++L+ + + N L++AL +
Sbjct: 62 LFQLREYNEASVKPLILNTDIQGIDLIPAHMSLATLDRVMGNRSGMGLILKRALLALRHV 121
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
YDY++ID PP +G+ +VN+L ASD +LIP++ + + G++ M ++++++ + ++
Sbjct: 122 YDYVLIDCPPILGVMMVNALAASDRILIPVQTEFLAMKGLERMVRTLAIMQKSRSREFKV 181
Query: 180 LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIP 215
IVP + K+T+ L +LK+ YPD + +P
Sbjct: 182 T-IVPTMYDKRTRASLQTLNQLKKDYPDKVWTSAVP 216
>pir||D75570 chromosome partitioning ATPase Soj - Deinococcus radiodurans
(strain R1) >gi|6457672|gb|AAF09606.1|AE001865_3
(AE001865) chromosome partitioning ATPase Soj
[Deinococcus radiodurans]
Length = 296
Score = 122 bits (302), Expect = 6e-27
Identities = 77/253 (30%), Positives = 135/253 (52%), Gaps = 11/253 (4%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL--IGMDVVNYEDKNV 62
I + NQKGGVGKTT A+NLG L+ G++VL+VD+DPQ N T L G + YE
Sbjct: 51 IGVVNQKGGVGKTTTAVNLGAYLAAGGRRVLVVDMDPQGNATSGLGQRGAEQGLYE---- 106
Query: 63 GTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
L S + L ++ L ++P+ L+ +E+ + + RL +++ YD
Sbjct: 107 -ALGEPARSADFTLGTTQKGLDVLPATPDLAGAGVELADDPDALARLLASVQ----GYDL 161
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
+++D PPS+G VN L A D +LIP++ Y+ + G+ + + ++ N L++LGI
Sbjct: 162 VLVDAPPSLGPLTVNVLAAVDALLIPVQAEYYALEGLAGLMETVERVQGGLNPRLKVLGI 221
Query: 183 VPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKA 242
V +T + Q +++ + + + +P+ + + +A + GK I + P + A
Sbjct: 222 VLTMLDSRTNLAQEVETMVRQHFGELVFWSVVPRNVRLSEAPSFGKPINAFAPLSSGAAA 281
Query: 243 FEKLAREVISIVE 255
+++LA EV+ VE
Sbjct: 282 YKRLAEEVLQRVE 294
>pir||T46618 hypothetical protein 3 [imported] - Pseudomonas aeruginosa
>gi|11351740|pir||B83464 probable plasmid partitioning
protein PA1462 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|3721574|dbj|BAA33553.1| (AB012767)
ORF3 [Pseudomonas aeruginosa]
>gi|9947414|gb|AAG04851.1|AE004575_10 (AE004575)
probable plasmid partitioning protein [Pseudomonas
aeruginosa]
Length = 262
Score = 116 bits (289), Expect = 2e-25
Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 7/254 (2%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
V ++ANQKGGVGKTT ++ L L+ GK+V++VD+DP ++T + G D E
Sbjct: 3 VWAVANQKGGVGKTTSSIALAGLLADAGKRVVVVDLDPHGSMT-SYFGYDPDTLEHSAFD 61
Query: 64 TLMTRESSVEDVLIEV-----EENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFP 118
+ + + E + + E + L+PS L+ E + + K+L ++
Sbjct: 62 LFLHQGNVPEGLPASLLRSTSNERISLLPSSTALATLERQSPGKSGLGLVVSKSLAQLWQ 121
Query: 119 DYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLR 178
D+D+ IID+PP +G+ +VN+L AS +++IP++ + V G++ M N ++MI + L
Sbjct: 122 DFDHAIIDSPPLLGVLMVNALAASQHLVIPVQTEFLAVKGLERMVNTLAMINRSRKQALP 181
Query: 179 LLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGK 238
IVP F ++T+ + L+ L E YPD IP + A G + +++ +
Sbjct: 182 YT-IVPTLFDRRTQASLSTLRILNENYPDNLWQAFIPIDTRLRDASRAGVTPSQHDGKSR 240
Query: 239 ASKAFEKLAREVIS 252
A+ L + +++
Sbjct: 241 GVIAYRALLKHLLA 254
>pir||H69060 chromosome partitioning protein Soj - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622570|gb|AAB85931.1| (AE000907) chromosome
partitioning protein Soj [Methanobacterium
thermoautotrophicum]
Length = 218
Score = 116 bits (288), Expect = 2e-25
Identities = 62/219 (28%), Positives = 127/219 (57%), Gaps = 7/219 (3%)
Query: 39 VDPQFNLTFALIGMDVVNYE-DKNVGTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKE 96
+DPQ N T G + E + + T+++R++++ V++ E ++L++ PS+++LS E
Sbjct: 1 MDPQGNAT---TGFGINKSELESTIYTVLSRKAALSSVIMPAELQDLYIAPSNISLSGAE 57
Query: 97 IEIMNTYNRERRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGV 156
IE+ + L+++L + D+DYI ID PPS+GI +N+L ASD V+IP++ Y+ +
Sbjct: 58 IELSSEIGYHAILQESLGDVRNDFDYIFIDAPPSLGILTLNALVASDSVIIPIQAEYYAL 117
Query: 157 IGMQLMFNLMSMIREETNEGLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPIL--TTI 214
GM + M+++ E + GI+ + +T++ + +E+++ + + + T I
Sbjct: 118 EGMADLLKTMNLVEERLQSPCPIKGILLTLYDSRTRLARDVQREVEKFFGERENIFRTRI 177
Query: 215 PKAIAIEKAQAEGKSIFEYEPNGKASKAFEKLAREVISI 253
P+ + + +A + GK Y+P ++A+ KLA E++ +
Sbjct: 178 PRNVRLAEAPSHGKPCITYDPESTGTEAYMKLAAEILEM 216
>emb|CAA57590.1| (X82078) ORF7 [Chlamydophila pneumoniae]
Length = 261
Score = 116 bits (287), Expect = 3e-25
Identities = 72/248 (29%), Positives = 134/248 (54%), Gaps = 7/248 (2%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLG-KKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
I+ + KGG GKTT++LN+G +L++ KKVLLVD+DPQ NLT G+ V + + N+
Sbjct: 4 IAFCSFKGGTGKTTLSLNVGCNLAQYSNKKVLLVDLDPQANLT---TGLGVQSCYESNLN 60
Query: 64 TLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
+ +V D++ + + ENLH++PS + + N+ L +L+ I +YD
Sbjct: 61 DIFRSSGNVRDIIQDTKIENLHIVPSSILIEEFREFNRNSVLDTSHLRSSLQLIESNYDL 120
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
I+D PPS+G + ASD++++ L F ++G+Q + S++ ++ + L +LGI
Sbjct: 121 CILDTPPSLGTLTEEAFIASDHLIVCLTPEPFSILGLQKIKEFCSVLPKK--KDLSVLGI 178
Query: 183 VPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKA 242
V + + + L ++ +Y + + + + I + ++ + SI PN +AS
Sbjct: 179 VFSFWDGRNSTNSTYLNIIESIYEGKVLSSKVRRDITLSRSLLKETSIANAYPNSRASHD 238
Query: 243 FEKLAREV 250
+L +E+
Sbjct: 239 ILRLTKEI 246
>gi|10803576 sojB [Halobacterium sp. NRC-1] >gi|7444247|pir||T08246 sojB protein
- Halobacterium sp. (strain NRC-1) plasmid pNRC100
>gi|2822307|gb|AAC82813.1| (AF016485) sojB
[Halobacterium sp. NRC-1] >gi|10584097|gb|AAG20730.1|
(AE005142) Spo0A activation inhibitor; SojB
[Halobacterium sp. NRC-1]
Length = 254
Score = 114 bits (282), Expect = 1e-24
Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 8/247 (3%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK---- 60
+++AN+KGGVGKTTIA+N+ +L+ G VL VD+D Q N T L G+D D
Sbjct: 5 LTVANEKGGVGKTTIAINVAGALADRGHDVLFVDLDAQGNGTIGL-GLDAAYTGDGISLY 63
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
++ T + + + D +I E ++PSH+ + + E E+ RL AL + DY
Sbjct: 64 DILTDLDAQQQI-DAVIRSHEEFDVLPSHIDMFSAESELQTAMRGRERLWMALDELHADY 122
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
DYIIID PPS+G+ N+L A VLIP + ++F + + + + +
Sbjct: 123 DYIIIDAPPSLGLLTDNALLACRNVLIPALPEEASRHALDILFGHVDTLEDGYGVDIDPI 182
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
G+V N+ + + L+ E Y P L I + I++A A G S+F +
Sbjct: 183 GLVANRIEVDGEADRI-LEWFDEQYKSLP-LWRIRNRVGIKRAWANGTSVFGHSETTDMD 240
Query: 241 KAFEKLA 247
+ F+ +A
Sbjct: 241 ERFQAIA 247
>gi|11497378 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|6382399|gb|AAF07709.1|AE001584_6 (AE001584) plasmid
partition protein, putative [Borrelia burgdorferi]
Length = 253
Score = 111 bits (274), Expect = 1e-23
Identities = 65/203 (32%), Positives = 115/203 (56%), Gaps = 10/203 (4%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I+IA+ KGGVGKTT+ + Y L L KKVLL+D+DPQ +L+ + + N + N
Sbjct: 8 IITIASPKGGVGKTTLTILFSYILKDLSKKVLLIDLDPQNSLS-SYFSKYIFNIDKCNSY 66
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY--D 121
+L+ ++ + ++ + + +IPSH L EI+N ++ LE L +Y D
Sbjct: 67 SLLKKDVYFGQCINKINDFISIIPSHPILENFNSEILNY--KDLLLENILNRNITNYNFD 124
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
YI++D PP++G L NSL +DY++IP+++ F V + ++ ++ I++ N+ +
Sbjct: 125 YILLDTPPNLGFILKNSLNVTDYIIIPVQVERFSVESLSILMQTINDIKDFRNKSFN-IS 183
Query: 182 IVPNKFTKQTKVPQARLKELKEL 204
I+ N+F K K+++EL
Sbjct: 184 IIENQFLKNRNT----FKDVEEL 202
>gi|10956429 pXO2-39 [Bacillus anthracis] >gi|6470190|gb|AAF13644.1|AF188935_42
(AF188935) pXO2-39 [Bacillus anthracis]
Length = 288
Score = 111 bits (274), Expect = 1e-23
Identities = 82/271 (30%), Positives = 135/271 (49%), Gaps = 27/271 (9%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALI-GMDVVNYE----D 59
I++AN KGGVGK+TI +L Y L+ G KVL D+DPQ N T +I VN E D
Sbjct: 9 ITVANSKGGVGKSTIVRHLSYHLALKGYKVLTADMDPQANTTKTMILTRKRVNDEYFAFD 68
Query: 60 KNVGTLM--TRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTY-------------- 103
K TLM ++ S+E++ + + ENL L+PSH E + + +
Sbjct: 69 K---TLMRAVQDGSLENMQLNIIENLDLLPSHSDFENFESLLTSKFGHAETSDPNYHEIE 125
Query: 104 -NRERRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGM-QL 161
N+ L+P+ +YD+IIID+PP+ + +S ASDYVL+ + + G
Sbjct: 126 TNKINYFRNLLEPLKQNYDFIIIDSPPTASYYTKSSAMASDYVLVAFQTQSDSLDGANDY 185
Query: 162 MFNLMSMIREETNEGLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPIL-TTIPKAIAI 220
+ ++ + EE N L ++GI+PN+ K+ L++ K+++ + + IP A I
Sbjct: 186 ITRFLARLVEEYNAQLDVVGILPNQLHSAGKIDTTVLQDAKDIFGENNLFKNLIPYAKRI 245
Query: 221 EKAQAEGKSIFEYEPNGKASKAFEKLAREVI 251
+ G ++ +Y ++ FE E +
Sbjct: 246 QSVPRIGLNVDQYWDKKLFNEVFEPFTDEFL 276
>pir||G39999 hypothetical protein 7 - Chlamydophila psittaci
Length = 259
Score = 108 bits (268), Expect = 5e-23
Identities = 71/253 (28%), Positives = 133/253 (52%), Gaps = 19/253 (7%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLG-KKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
++ + KGG GKTT++LN+G +L+++ KKVLLVD+DPQ NLT G+ V +D ++
Sbjct: 4 LAFCSFKGGTGKTTLSLNIGSNLAQVSRKKVLLVDLDPQANLT---TGLGVQIQDDHSLN 60
Query: 64 TLMTRESSVEDVLIEVE-ENLHLIPSHLTLSA-----KEIEIMNTYNRERRLEKALKPIF 117
++ + + + + + ENL +IPS + + K+I + + L AL+ +
Sbjct: 61 EILRHSNEIRRAIHKTKIENLDIIPSSVLVEDFRGLDKDISLSVNH-----LHLALQKVQ 115
Query: 118 PDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGL 177
YD I+D PPS+GI + ASDY+++ L F ++G+Q + S I L
Sbjct: 116 DQYDVCILDTPPSLGILSQEAFLASDYLVVCLTPEPFSILGLQKIKEFCSTI----GNNL 171
Query: 178 RLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNG 237
+LGIV + + ++ + ++ +Y + + I + + + ++ + S+ PN
Sbjct: 172 DILGIVFSFWDERNSTNSTYMDIIETIYEGKILSSKIRRDVTVSRSLLKESSVINAYPNS 231
Query: 238 KASKAFEKLAREV 250
+A+K L +E+
Sbjct: 232 RAAKDILNLTKEI 244
>gi|10957096 hypothetical protein [Chlamydophila psittaci] >gi|97235|pir||S18148
hypothetical protein 7 - Chlamydophila psittaci
>gi|580999|emb|CAA44339.1| (X62475) hypothetical protein
[Chlamydophila psittaci]
Length = 259
Score = 108 bits (268), Expect = 5e-23
Identities = 71/253 (28%), Positives = 133/253 (52%), Gaps = 19/253 (7%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLG-KKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
++ + KGG GKTT++LN+G +L+++ KKVLLVD+DPQ NLT G+ V +D ++
Sbjct: 4 LAFCSFKGGTGKTTLSLNIGSNLAQVSRKKVLLVDLDPQANLT---TGLGVQIQDDHSLN 60
Query: 64 TLMTRESSVEDVLIEVE-ENLHLIPSHLTLSA-----KEIEIMNTYNRERRLEKALKPIF 117
++ + + + + + ENL +IPS + + K+I + + L AL+ +
Sbjct: 61 EILRHSNEIRRAIHKTKIENLDIIPSSVLVEDFRGLDKDISLSVNH-----LHLALQKVQ 115
Query: 118 PDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGL 177
YD I+D PPS+GI + ASDY+++ L F ++G+Q + S I L
Sbjct: 116 DQYDVCILDTPPSLGILSQEAFLASDYLVVCLTPEPFSILGLQKIKEFCSTI----GNNL 171
Query: 178 RLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNG 237
+LGIV + + ++ + ++ +Y + + I + + + ++ + S+ PN
Sbjct: 172 DILGIVFSFWDERNSTNSTYMDIIETIYEGKILSSKIRRDVTVSRSLLKESSVINAYPNS 231
Query: 238 KASKAFEKLAREV 250
+A+K L +E+
Sbjct: 232 RAAKDILNLTKEI 244
>gb|AAC08068.1| (AF031898) unknown [Pseudomonas putida]
Length = 277
Score = 107 bits (265), Expect = 1e-22
Identities = 71/268 (26%), Positives = 132/268 (48%), Gaps = 20/268 (7%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT-FALIGMDVVNYE---- 58
V ++ANQKGGVGKTT + L L+ GK+V++VD+DP ++T + D + +
Sbjct: 3 VWAVANQKGGVGKTTTTIALAGLLAEAGKRVVVVDLDPHGSMTSYFGHNPDALEHSCYDL 62
Query: 59 --------DKNVGTLMTRESSVED------VLIEVEENLHLIPSHLTLSAKEIEIMNTYN 104
+ + L + +V D +L +E + L+PS L+ E +
Sbjct: 63 FLHNPDALEHSCYDLFLHKGAVPDGLPGQLLLPTSDERISLLPSSTALAVLERQSPGQNG 122
Query: 105 RERRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFN 164
+ K+L ++ D+DY +ID+PP +G+ +VN+L AS ++IP++ + V G++ M
Sbjct: 123 LGLVIAKSLAQLWQDFDYAVIDSPPLLGVLMVNALAASQQLVIPVQTEFLAVKGLERMVG 182
Query: 165 LMSMIREETNEGLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQ 224
++MI + L IVP F ++T+ LK L++ Y IP + A
Sbjct: 183 TLAMINRSRKQALP-YQIVPTLFDRRTQASLGTLKLLRDTYGQQVWQGYIPVDTRLRDAS 241
Query: 225 AEGKSIFEYEPNGKASKAFEKLAREVIS 252
+G + +++ + A+ L + +++
Sbjct: 242 RKGVTPSQFDSKSRGLIAYRALLKHLLT 269
>emb|CAA60657.1| (X87202) orfC [Borrelia burgdorferi]
Length = 257
Score = 106 bits (263), Expect = 2e-22
Identities = 65/163 (39%), Positives = 100/163 (60%), Gaps = 7/163 (4%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT---FALIGMDVVNYEDK 60
+I+IA+ KGGVGK+T ++ L LS+ KK+LL+D+D Q ++T F I VN E+
Sbjct: 8 IITIASLKGGVGKSTTSIILATLLSK-SKKILLIDIDTQASITSFYFNNIQNKNVNLENF 66
Query: 61 NVGTLMTRES-SVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD 119
N+ ++ + DV+I ++ NL LIPS+L+L E + +E RL+K L+ I +
Sbjct: 67 NIYEILKEGALDTRDVIINIDNNLDLIPSYLSLHKFNQEAITF--KELRLKKKLESIQDN 124
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLM 162
YDYIIID PPS+ L N+L +S YVL+P+ + V + L+
Sbjct: 125 YDYIIIDTPPSLDFALTNALVSSQYVLVPITAEKWAVESLDLL 167
>pir||E75592 probable chromosome partitioning ATPase, ParA family - Deinococcus
radiodurans (strain R1)
>gi|6460595|gb|AAF12301.1|AE001862_127 (AE001862)
chromosome partitioning ATPase, putative, ParA family
[Deinococcus radiodurans]
Length = 260
Score = 106 bits (261), Expect = 4e-22
Identities = 72/259 (27%), Positives = 132/259 (50%), Gaps = 24/259 (9%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGT 64
+++ N GG GKT++ LN+GY L+R G +VLL+D+DPQ NLT +G+ V
Sbjct: 8 LTVFNHAGGAGKTSLTLNVGYELARGGLRVLLLDLDPQANLT-GWLGISGV--------- 57
Query: 65 LMTRESSVEDVLIEVEE--------NLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPI 116
TRE +V V ++ + L +IP+H++L+ E ++M + RL +AL +
Sbjct: 58 --TREMTVYPVAVDGQPLPSPVKAFGLDVIPAHVSLAVAEGQMMGRVGAQGRLRRALAEV 115
Query: 117 FPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEG 176
DYD +ID+PPS+G + + A+D +++P+ G+ + + ++ R E
Sbjct: 116 SGDYDVALIDSPPSLGQLAILAALAADQMIVPVPTRQKGLDALPGLQGALTEYR-EVRPD 174
Query: 177 LRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAI-EKAQAEGKSIFEYEP 235
L + VP + + + Q L +LK +P+ +P+ A+ + A+G + EY P
Sbjct: 175 LTVALYVPTFYDARRRHDQEVLADLKAHL--SPLARPVPQREAVWLDSTAQGAPVSEYAP 232
Query: 236 NGKASKAFEKLAREVISIV 254
++L ++ + +
Sbjct: 233 GTPVHADVQRLTADIAAAI 251
>pir||G71495 probable chromosome partitioning ATPase-chltr plasmid protein
homolog gp5d - Chlamydia trachomatis (serotype D, strain
UW3/Cx) >gi|3329025|gb|AAC68184.1| (AE001329) chromosome
partitioning ATPase-CHLTR plasmid protein homolog GP5D
[Chlamydia trachomatis]
Length = 255
Score = 103 bits (254), Expect = 2e-21
Identities = 75/255 (29%), Positives = 138/255 (53%), Gaps = 11/255 (4%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGK-KVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
I++ + KGG KT+ L+LG +L++ K +VLL+D D Q NLT L G+D Y+ ++
Sbjct: 4 IAVNSFKGGTAKTSTTLHLGAALAQYHKARVLLIDFDAQANLTAGL-GLDPDCYD--SLA 60
Query: 64 TLMTRESSVEDVLIEVEEN-LHLIPSHLTLSAKEIE---IMNTYNRERRLEKALKPIFPD 119
++ E ++E+V+ ++ + L LIP+ L E+ + Y+ ER L+ L I
Sbjct: 61 VVLQGEKNIEEVIRPIDSSGLDLIPADTWLERVEVSGSLAADRYSHER-LKIILSKIEHR 119
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
YDY+IID PPS+ ++L A+ + LI ++ V G++ + + I + L +
Sbjct: 120 YDYVIIDTPPSLCWLTESALIAAQHALICATPEFYSVKGLERLATFIQGI--SSRHPLNI 177
Query: 180 LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKA 239
LG+ + + + K A + +++ +P + T I + I I +A GK +F P+ +A
Sbjct: 178 LGVTLSFWNYRGKNNAAFTELIQKTFPGKLLNTRIRRDITISEAAIHGKPVFSTAPSARA 237
Query: 240 SKAFEKLAREVISIV 254
S+ + KL E++ ++
Sbjct: 238 SEDYLKLTEELLFLL 252
>pir||B81656 ParA family protein TC0871 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190898|gb|AAF39667.1| (AE002353) ParA
family protein [Chlamydia muridarum]
Length = 255
Score = 102 bits (253), Expect = 3e-21
Identities = 74/255 (29%), Positives = 136/255 (53%), Gaps = 11/255 (4%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGK-KVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
I++ + KGG KT+ L+LG +L++ K +VLL+D D Q NLT L G+D Y+ ++
Sbjct: 4 IAVNSFKGGTAKTSTTLHLGAALAQYHKARVLLIDFDAQANLTAGL-GLDPDCYD--SLA 60
Query: 64 TLMTRESSVEDVLIEVEEN-LHLIPSHLTLSAKEIE---IMNTYNRERRLEKALKPIFPD 119
++ E + +V+ ++ + L LIP+ L E+ + Y+ ER L+ L I
Sbjct: 61 VVLQGEKQISEVIRSIDSSGLDLIPADTWLERVEVSGSLAADRYSHER-LKTILSTIEHQ 119
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
YDY+IID PPS+ ++L A+ + LI ++ V G++ + + I + L +
Sbjct: 120 YDYVIIDTPPSLCWLTESALIAAQHALICATPEFYSVKGLERLATFIQGI--SSRHPLNI 177
Query: 180 LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKA 239
LG+ + + + K A + +++ +P + T I + I I +A GK +F P+ +A
Sbjct: 178 LGVTLSFWNYRGKNNAAFTELIQKTFPGKLLNTRIRRDITISEAAIHGKPVFSTAPSARA 237
Query: 240 SKAFEKLAREVISIV 254
S+ + KL E++ ++
Sbjct: 238 SEDYLKLTEELLFLL 252
>gi|11497013 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7451139|pir||H70217 conserved hypothetical protein
BBB12 - Lyme disease spirochete plasmid B/cp26
>gi|2689894|gb|AAC66318.1| (AE000792) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 253
Score = 102 bits (252), Expect = 4e-21
Identities = 78/258 (30%), Positives = 136/258 (52%), Gaps = 21/258 (8%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGM---DVVNYEDK 60
+I+IA+ KGGVGK+T +L LS+ K+LL+D+DPQ + T I + ++ +D
Sbjct: 8 IITIASIKGGVGKSTTSLMFTNILSKKNNKILLIDLDPQASSTSFYINILRKKNLSPKDI 67
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
N+ ++ +E +E+ I+++ N I SH+ LS E ++ +E L+ L I Y
Sbjct: 68 NIYKVLKKEIDIENSTIKIDNNTDFIASHINLSRFNEESISL--KENLLKIFLSFIQNRY 125
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFN-LMSMIREETNEGLRL 179
D+II+D P++G L NSL SDY++IPL + + + L+ N L + R++ L +
Sbjct: 126 DFIIMDTAPTLGSLLNNSLIISDYLIIPLPTDQWAIESLDLIINRLDDLFRKD----LPI 181
Query: 180 LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIF---EYEPN 236
++ KF ++ + + LK+ E L ++PK + K+IF E+ N
Sbjct: 182 FYLI-TKFIERQNIDK-ELKKFIECEYKGKFLGSVPKRDNLR------KTIFYREEFNSN 233
Query: 237 GKASKAFEKLAREVISIV 254
KA+E + +SI+
Sbjct: 234 EDYYKAYENILENFLSII 251
>gi|11496835 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7451144|pir||B70247 conserved hypothetical protein
BBJ17 - Lyme disease spirochete plasmid J/lp38
>gi|2690179|gb|AAC66087.1| (AE000787) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 245
Score = 102 bits (252), Expect = 4e-21
Identities = 65/202 (32%), Positives = 111/202 (54%), Gaps = 16/202 (7%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I+IAN KGGVGK+T+++ Y L LGKKVLL+D+D Q LT + V N++ N+
Sbjct: 8 IITIANLKGGVGKSTLSILFSYVLKDLGKKVLLIDMDSQNALT-SYFRKYVFNFDKNNIY 66
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKAL--KPIFPDYD 121
L+ + + ++ +N+ +IPSH L E N N+E L L + D+D
Sbjct: 67 NLLIGNVYFDQCISKINDNIFIIPSHPFLD--EFNDKNLDNKENLLSFCLDKNVLGHDFD 124
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
YI +D PPS L N+L +++++IP++ + + +++ LM I +++ +
Sbjct: 125 YIFLDTPPSFSFILKNALNTTNHIIIPVQPETWSIESLEI---LMKKITDKSYN----IS 177
Query: 182 IVPNKFTKQTKVPQARLKELKE 203
IV N+F K + LKE+++
Sbjct: 178 IVVNQFIKNRNI----LKEVED 195
>pir||F72034 ParA chromosome partitioning ATPasen CP1066 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4377116|gb|AAD18943.1| (AE001661) chromosome
partitioning ATPase [Chlamydophila pneumoniae CWL029]
>gi|7189979|gb|AAF38838.1| (AE002263) ParA family
protein [Chlamydophila pneumoniae AR39]
>gi|8979179|dbj|BAA99013.1| (AP002548) chromosome
partitioning ATPase [Chlamydophila pneumoniae J138]
Length = 255
Score = 101 bits (250), Expect = 7e-21
Identities = 72/255 (28%), Positives = 136/255 (53%), Gaps = 11/255 (4%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGK-KVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
I++ + KGG KT+ L+LG +L++ + +VLL+D D Q NLT L G+D Y+ ++
Sbjct: 4 IAVNSFKGGTAKTSTTLHLGAALAQYHQARVLLIDFDAQANLTSGL-GLDPDCYD--SLA 60
Query: 64 TLMTRESSVEDVLIEVEEN-LHLIPSHLTLSAKEIE---IMNTYNRERRLEKALKPIFPD 119
++ E +++V+ +++ L LIP+ L E+ + Y+ ER L+ L +
Sbjct: 61 VVLQGEKEIQEVIRPIQDTQLDLIPADTWLERIEVSGNLAADRYSHER-LKYVLGSVQDK 119
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
YDY+IID PPS+ ++L A+DY LI ++ V G++ + + I L +
Sbjct: 120 YDYVIIDTPPSLCWLTESALIAADYALICATPEFYSVKGLERLAGFIQGI--SARHPLTI 177
Query: 180 LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKA 239
LG+ + + + K A + + + +P + T I + I + +A GK +F P+ +A
Sbjct: 178 LGVALSFWNCRGKNNSAFAELIHKTFPGKLLNTKIRRDITVSEAAIHGKPVFATSPSARA 237
Query: 240 SKAFEKLAREVISIV 254
S+ + L +E++ ++
Sbjct: 238 SEDYFNLTKELLILL 252
>pir||B47092 copy control protein repB - Enterococcus faecalis plasmid pAD1
>gi|141858|gb|AAB00504.1| (L01794)
replication-associated protein [Enterococcus faecalis]
Length = 281
Score = 101 bits (249), Expect = 9e-21
Identities = 80/274 (29%), Positives = 140/274 (50%), Gaps = 24/274 (8%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL---IGMDVVNYEDKN 61
I N KGGVGKTT ++ + Y L++ G +VL+ D+DPQ N T L G+ N E
Sbjct: 5 IVFGNFKGGVGKTTNSVMVAYELAKKGFRVLVCDLDPQANSTQLLRRTYGLQN-NKELPI 63
Query: 62 VGTLMT--RESSVEDVLIEVEENLHLIPSHLTL----SAKEIEIMNTYN--RERRL---E 110
T+M +E ++ ++ V NL+L+PSH E+ IM T +ERR+
Sbjct: 64 KETMMVAIQEGNLGKAVVNVMPNLYLLPSHKDFVNYPDFLELTIMPTEKNYKERRIAFFS 123
Query: 111 KALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFN-LMSMI 169
+ LKPI DYDYII D PP++ +F +L +S+Y++I L+ + G + + L ++
Sbjct: 124 ELLKPIENDYDYIIFDVPPTLSVFTDTALYSSNYIVIVLQTQQRSLDGAEAFWEYLQTLY 183
Query: 170 REETNEGLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAI-AIEKAQAEGK 228
N + G++P + + +K+ K+ + D + TI + + +++ +G
Sbjct: 184 DTYKNIDFDIAGVLPVLLKNDSGIDNQIIKDAKDAFGDETLFNTIVRHMERLKRYDRKGI 243
Query: 229 S------IFEYEPNGKASKAFEKLAREVISIVEG 256
S ++++ + K + + KL+ E+I EG
Sbjct: 244 SEEGYTELYDFH-DRKVHELYNKLSDEIIERTEG 276
>gi|11496706 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7451141|pir||C70238 conserved hypothetical protein
BBH28 - Lyme disease spirochete plasmid H/lp28-3
>gi|2690050|gb|AAC65994.1| (AE000784) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 251
Score = 101 bits (249), Expect = 9e-21
Identities = 60/203 (29%), Positives = 115/203 (56%), Gaps = 10/203 (4%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I++A+ KGGVGK+ +++ Y L LGKKVLL+D+DPQ +LT + + N E N
Sbjct: 8 IITMASIKGGVGKSVLSILFSYVLKELGKKVLLIDLDPQNSLT-SYFNRYISNIEKYNTY 66
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY--D 121
+++ + + + ++++ + +IPSH L E ++ +E LE L +Y D
Sbjct: 67 SMLKGDFHFNECIKKIDDYISIIPSHPILGKFNSEAID--YKEVILEHHLNENMQNYNFD 124
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
Y+++D PPS+ L N+L +DY++IP+++ + + ++ N ++ I + + + +
Sbjct: 125 YVLLDTPPSLDFLLKNALNVADYIVIPVQVEIWSIESFTILINAVNDI-TKFRKKIYNIS 183
Query: 182 IVPNKFTKQTKVPQARLKELKEL 204
IV N+F K +KE+++L
Sbjct: 184 IVENQFIKNRNT----IKEVEDL 202
>pir||H83016 conserved hypothetical protein PA5028 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951317|gb|AAG08413.1|AE004916_2 (AE004916)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 255
Score = 100 bits (247), Expect = 2e-20
Identities = 77/252 (30%), Positives = 129/252 (50%), Gaps = 19/252 (7%)
Query: 7 IANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG--- 63
+ NQKGGVGK++IA NL + G + LLVD+D Q N T L G+ ED VG
Sbjct: 5 VFNQKGGVGKSSIACNLAAVSAAEGYRTLLVDLDAQANSTHYLTGL---TGEDLPVGIAD 61
Query: 64 ----TLMTRESSVEDVLIEVEE----NLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKP 115
TL + S + +E+ E NLH++ S L+ + ++ + + + +L K L
Sbjct: 62 FFKQTLSSGPFSKKG-RVEIYETPFDNLHIVTSSPELADLQPKLESKH-KINKLRKLLDE 119
Query: 116 IFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNE 175
+ DYD I +D PP++ + V++L A+D LIP + F + + + +R++ NE
Sbjct: 120 LDEDYDRIYLDTPPALNFYTVSALIAADRCLIPFDCDSFSRQALYGLLQEIEELRDDHNE 179
Query: 176 GLRLLGIVPNKFTKQTKVPQARLKEL-KELYPDAPILTTIPKAIAIEKAQAEGKSIFEYE 234
L++ GIV N+F + +PQ L EL E P P+ + ++ + ++ + E
Sbjct: 180 DLQVEGIVVNQFQPRASLPQQLLDELVAEELPVLPVY--LMSSVKMRESHQACTPLIFLE 237
Query: 235 PNGKASKAFEKL 246
P K ++ F +L
Sbjct: 238 PRHKLTQQFVEL 249
>gi|11496669 stage 0 sporulation protein J (spoOJ) [Borrelia burgdorferi]
>gi|7451138|pir||H70231 probable stage 0 sporulation
protein J - Lyme disease spirochete plasmid G/lp28-2
>gi|2690013|gb|AAC66056.1| (AE000786) stage 0
sporulation protein J (spoOJ) [Borrelia burgdorferi]
Length = 255
Score = 99.1 bits (243), Expect = 5e-20
Identities = 81/255 (31%), Positives = 134/255 (51%), Gaps = 16/255 (6%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I+IA+ KGGVGK+T ++ LS+ K VLLVD+DPQ +T I D E N+
Sbjct: 12 IIAIASIKGGVGKSTSSIMFSTILSKTNK-VLLVDLDPQNAVTSYFITQDHPRMELINIY 70
Query: 64 ---TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
+L+ + + +DV+I + +NL IPS+L L AK + N + +E L A+ DY
Sbjct: 71 NSYSLIKKHKTFKDVVISISKNLDFIPSYLEL-AKFSKEGNQF-KELMLRNAVYNYLEDY 128
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
DY+IID PPS+ L N+L +D V+IP+ L + V + L+ N I+E N +
Sbjct: 129 DYVIIDTPPSLSSELDNALVIADKVIIPVPLERWAVENLPLLIN---QIKELENNFMGKE 185
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
+ + F + ++ + E+ L + + I + + K++A K I +Y K +
Sbjct: 186 AKIIHIFASKVEIGRVTSTEIMSLLKEKYLNKFIGE---VHKSEAL-KKIIDYAIGPKEN 241
Query: 241 KAFEKLAREVISIVE 255
+ + K E + I+E
Sbjct: 242 ENYYK---EYLRILE 253
>gi|11496639 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7451142|pir||D70229 conserved hypothetical protein
BBF13 - Lyme disease spirochete plasmid F/lp28-1
>gi|2689983|gb|AAC66366.1| (AE000794) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 249
Score = 97.9 bits (240), Expect = 1e-19
Identities = 58/201 (28%), Positives = 111/201 (54%), Gaps = 8/201 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I++ + KGGVGK+T+++ Y L LGKK+LL+D+DPQ +LT + + + E NV
Sbjct: 8 IIALTSVKGGVGKSTLSILFSYLLKELGKKILLIDLDPQNSLT-SYFTKYIPDAETYNVY 66
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYI 123
+++ + + L ++ + +++IPSH L E E L + + I D+DYI
Sbjct: 67 SMLKGDFYFKKYLNKINDYMYIIPSHPMLEKFNTETDQETFLEYYLNRNI--INCDFDYI 124
Query: 124 IIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIV 183
++D P + L ++L S+Y++IP++ + + ++ N+++ I + + + IV
Sbjct: 125 LLDTSPGSNLLLKSALNTSNYIIIPVQSEIWSIESFNILINIINGITKHREKKYN-ISIV 183
Query: 184 PNKFTKQTKVPQARLKELKEL 204
N+F K + LKE++ L
Sbjct: 184 ENQFIKNRNI----LKEVENL 200
>pir||A75056 cell division inhibitor (mind-2) PAB0954 - Pyrococcus abyssi
(strain Orsay) >gi|5458855|emb|CAB50342.1| (AJ248287)
cell division inhibitor (minD-2) [Pyrococcus abyssi]
Length = 245
Score = 97.9 bits (240), Expect = 1e-19
Identities = 68/252 (26%), Positives = 128/252 (49%), Gaps = 21/252 (8%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M +ISI + KGG GKTT+ NL +L +GKKVL VD D ++G+D V D
Sbjct: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDV---DV 57
Query: 61 NVGTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD 119
+ ++ E+ ++D + + +N++++P + +M R+L + +K + D
Sbjct: 58 TLHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWE----HVMKA--DPRKLPEVIKSLKGD 111
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
YD+I+ID P + + ++++ + + L+ + + + M + GL +
Sbjct: 112 YDFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAI 165
Query: 180 LGIVPNKFTK-QTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGK 238
LG + N++ + + +P +++ D P+L IP+ AI + EG +Y+P +
Sbjct: 166 LGFILNRYGRTENDIPPDAAQDVM----DVPLLAVIPEDPAIREGTLEGIPAVKYKPESE 221
Query: 239 ASKAFEKLAREV 250
+KAF KLA+EV
Sbjct: 222 GAKAFVKLAQEV 233
>gi|11496646 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7451140|pir||E70230 conserved hypothetical protein
BBF24 - Lyme disease spirochete plasmid F/lp28-1
>gi|2689990|gb|AAC66373.1| (AE000794) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 254
Score = 97.1 bits (238), Expect = 2e-19
Identities = 64/190 (33%), Positives = 107/190 (55%), Gaps = 8/190 (4%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I+IA+ KGGVGK+ +A+ Y L KKVLLVD+DPQ +LT I + + E NV
Sbjct: 8 IITIASVKGGVGKSALAIIFSYILKNFNKKVLLVDLDPQNSLTSYFI-RHIKSIEGINVY 66
Query: 64 TLMT--RESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIF--PD 119
+ ++ L E+ N++++PSH L E E + +E+ LE +K I +
Sbjct: 67 YMFKDYQDFDPNKYLNEINNNMYIVPSHPILCKFEQE--DKRYKEQLLEYCVKKILINNN 124
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
+DYI+ID PPS+G L N+L ++ V+IP++L + V ++ + + + ++ +
Sbjct: 125 FDYILIDTPPSLGPLLYNALNITNKVIIPVQLERWSVEAFPMLMDAIEEVNLFKDKKID- 183
Query: 180 LGIVPNKFTK 189
+ IV N+F K
Sbjct: 184 ISIVENQFIK 193
>gi|11497116 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|2935191|gb|AAC35443.1| (AF022480) possible plasmid
partition protein; orfC [Borrelia burgdorferi]
>gi|6382137|gb|AAF07454.1|AE001576_13 (AE001576) plasmid
partition protein, putative [Borrelia burgdorferi]
Length = 246
Score = 96.3 bits (236), Expect = 3e-19
Identities = 60/164 (36%), Positives = 97/164 (58%), Gaps = 12/164 (7%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT---FALIGMDVVNYEDK 60
+I+IA+ KGGVGK+T A+ L LS+ KVLL+D+D Q ++T + I +N+
Sbjct: 8 IITIASIKGGVGKSTSAIILATLLSK-NNKVLLIDMDTQASITSYFYEKIEKLGINFTKF 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTL---SAKEIEIMNTYNRERRLEKALKPIF 117
N+ ++ ++ +I V+ NL LIPS+LTL S +IE +++ L+ +L ++
Sbjct: 67 NIYEILKENVDIDSTIINVDNNLDLIPSYLTLHNFSEDKIE-----HKDFLLKTSLGTLY 121
Query: 118 PDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQL 161
YDYI+ID PS+ + L N+L SDYV+IP+ + V + L
Sbjct: 122 YKYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDL 165
>gi|11496789 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7451143|pir||G70253 conserved hypothetical protein
BBK21 - Lyme disease spirochete plasmid K/lp36
>gi|2690133|gb|AAC66141.1| (AE000788) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 249
Score = 95.6 bits (234), Expect = 5e-19
Identities = 62/203 (30%), Positives = 111/203 (54%), Gaps = 10/203 (4%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
VI++A+ KGGVGK+++++ Y L LGKKVLL+D+DPQ +LT + + + + NV
Sbjct: 8 VITLASLKGGVGKSSLSILFSYVLKELGKKVLLIDLDPQNSLT-SYFNKYISSIKKYNVY 66
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYN--RERRLEKALKPIFPDYD 121
+ + + ++ E + +IPSH L + ++ E RL K+ K D+D
Sbjct: 67 EFLKGNTYFDKCENKINEFISIIPSHPILEKFNTDDIDYKEIILEFRLNKSTKSF--DFD 124
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
YIIID PS L N+L +D+++IP+++ + + ++ ++ I+ N+ +
Sbjct: 125 YIIIDTSPSRNFLLKNALNVTDHIIIPVQVERWSIESFSILTETINNIQIIKNKRYN-IS 183
Query: 182 IVPNKFTKQTKVPQARLKELKEL 204
I+ N+F K LKE++E+
Sbjct: 184 IIENQFIKNRNT----LKEVEEV 202
>gi|10956608 plasmid partition protein homolog ParB [Corynebacterium glutamicum]
>gi|4583406|gb|AAD25070.1|AF121000_17 (AF121000) plasmid
partition protein homolog ParB [Corynebacterium
glutamicum]
Length = 265
Score = 95.6 bits (234), Expect = 5e-19
Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 9/238 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+ ++ NQKGGVGK+T +L S G +VL+VD DPQ NLT A+ + V+ + +
Sbjct: 5 IFALCNQKGGVGKSTTTFHLARSGVLRGLRVLVVDNDPQGNLT-AVAAAEPVSEDQAGLA 63
Query: 64 TLMTRESS--VEDVLIE-VEENLHLIP-SHLTLSAKEIEIMNT-YNRERRLEKALKPIFP 118
++ +S V DV++ + L ++P S +TL E++ RE RL +AL +
Sbjct: 64 DALSSRASETVRDVIVPGIWPGLDVVPTSGVTLGTVRDELVIAGAGREGRLREALATVAE 123
Query: 119 DYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLR 178
DYD I+ID PS+ +N LTA+ VL+ + + G+ + + + +R N L
Sbjct: 124 DYDLILIDCAPSLDQLTINGLTAAHGVLVVTHSKQWSLSGLSQLLDTIESVRGYYNPSLT 183
Query: 179 LLGIVPNKFTKQTKVPQARLKEL---KELYPDAPILTTIPKAIAIEKAQAEGKSIFEY 233
+ G++ N+ ++T Q L EL E + IPK + I A + + E+
Sbjct: 184 VAGVLVNQHEERTVSGQTWLDELHTAAEARGLRVLTPPIPKRVVIADATEAARGLDEW 241
>gb|AAF29793.1|AF169008_20 (AF169008) ORF21 [Borrelia burgdorferi]
Length = 251
Score = 95.6 bits (234), Expect = 5e-19
Identities = 71/232 (30%), Positives = 123/232 (52%), Gaps = 12/232 (5%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT-FALIGMDV--VNYEDK 60
+I+IA+ KGGVGK+T AL G L++ KVL++D DPQ ++T ++L + VN E+
Sbjct: 8 IITIASIKGGVGKSTSALFYGNILAKERHKVLIIDSDPQASITSYSLFKLKEQNVNVENY 67
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
N+ + + +E+ + V L +IPS L LS E + ++ LEK L I Y
Sbjct: 68 NLYEVFKQRKYIENCIFTVSNCLDIIPSSLELSVFNSESIPL--QDNLLEKRLLTIKSKY 125
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMI-REETNEGLRL 179
DY+IID PS+G L N+L ++Y++IP+ + V + L+ + ++ + R + +
Sbjct: 126 DYVIIDTNPSLGHLLNNALVITNYLIIPINSDLWAVESIDLILDAINKVYRNDITPYFLV 185
Query: 180 LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIF 231
G + ++ + + + L+ Y + ++ IPK I+KA K F
Sbjct: 186 TGAL-----ERQNIDKEIIFNLENRYKE-NLIGVIPKRDDIKKALFYRKEFF 231
>gi|10956683 ORF1 [Streptomyces clavuligerus] >gi|421641|pir||S30400
hypothetical protein 1 - Streptomyces clavuligerus
plasmid pSCL >gi|48759|emb|CAA38040.1| (X54107) ORF1
[Streptomyces clavuligerus]
Length = 263
Score = 94.8 bits (232), Expect = 9e-19
Identities = 67/247 (27%), Positives = 127/247 (51%), Gaps = 7/247 (2%)
Query: 6 SIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTL 65
++ NQKGGV KTT L+LG +L+ G++ LLVD+D Q NLT AL + + +
Sbjct: 7 ALLNQKGGVAKTTTTLHLGGTLAAAGRRTLLVDLDGQGNLTTALKLPRLNPAGELTLARA 66
Query: 66 MTR---ESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
+ + + ++ ENL +IPS L L ++ + ++E RL L+ + +D+
Sbjct: 67 VLEGCDRAGAQSLVRRHSENLWVIPSALDLFTLPRQLHSARSKEERLSWVLEHLEDGFDH 126
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMF-NLMSMIREETNEGLRLLG 181
++D P++ + N L + +LIP+++ F + ++L+ + +++RE R G
Sbjct: 127 CLVDCRPALDVDTDNVLRWAHDILIPVDVDEFSIEALELLLGQVQTLVRETRMAPPRYRG 186
Query: 182 IVPNKFTKQ-TKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
+V N+ + + QA L L P++ IP A+ +A+ +G+++ +Y +
Sbjct: 187 LVINRVARPFSGFHQAVYDALHRL--PLPVVGEIPLRTAVAEAKNQGQTLAQYARTADVA 244
Query: 241 KAFEKLA 247
+ F LA
Sbjct: 245 RMFRDLA 251
>pir||A75323 probable chromosome partitioning ATPase, ParA family - Deinococcus
radiodurans (strain R1)
>gi|6459828|gb|AAF11587.1|AE002040_4 (AE002040)
chromosome partitioning ATPase, putative, ParA family
[Deinococcus radiodurans]
Length = 331
Score = 94.0 bits (230), Expect = 2e-18
Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 47/280 (16%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLG-KKVLLVDVDPQFNLTFALIGMDVVNYED 59
M VIS N KGGV KTT A+ L + + + KKVL++D+DPQ N T AL+G + D
Sbjct: 17 MPHVISFINLKGGVAKTTTAVQLADTFAFMRQKKVLVLDLDPQTNATLALVGEERWEQAD 76
Query: 60 KNVGTLM---------TRESSVEDVLIEVEENLHLIP-------------SHLTLSAKEI 97
+ TL TR + E ++ NL+ IP + + I
Sbjct: 77 ERGQTLAHLFLDLLNGTRNFNPERAIVRGASNLNTIPPEVFDQLPESAQYGRVDVLPSSI 136
Query: 98 EIMNTYNRERRL--------------EKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASD 143
+++ +R + + +K + P+F YDY++ID PP++G N L SD
Sbjct: 137 RLIDVQDRMQDIANRTNYSLSPMAVVQKYIGPLFGRYDYVLIDCPPNLGFITQNGLEVSD 196
Query: 144 YVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVPNKFTKQTKVPQARLKELKE 203
+ LIP G+ + + +R + + +R LG+V KF + + L+ L E
Sbjct: 197 HYLIPTIPDRMSTYGIPQIAGKIDELRRDRDLKIRCLGVVVTKFQSNSSQHKQGLEHLPE 256
Query: 204 LYPDA---------PILTTI-PKAIAIEKAQAEGKSIFEY 233
A PIL T+ P+ A +A + + Y
Sbjct: 257 YLRSAFAYTNEDTPPILNTVMPQTNASAEAMLFERDVRNY 296
>gi|11497340 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|6382361|gb|AAF07673.1|AE001581_15 (AE001581) plasmid
partition protein, putative [Borrelia burgdorferi]
Length = 251
Score = 93.6 bits (229), Expect = 2e-18
Identities = 60/170 (35%), Positives = 97/170 (56%), Gaps = 7/170 (4%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT----FALIGMDVVNYED 59
+I+IA+ KGGVGK+T AL G L++ KVL++D DPQ ++T F L +V N E+
Sbjct: 8 IITIASIKGGVGKSTSALFYGNILAKERHKVLIIDSDPQASITSYFLFKLKEQNV-NVEN 66
Query: 60 KNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD 119
N+ + + +E+ + V L +IPS L LS E + ++ LEK L I
Sbjct: 67 YNLYEVFKQRKYIENCIFTVSNCLDIIPSSLELSVFNSESIPL--QDNLLEKRLLTIKSK 124
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMI 169
YDY+IID PS+G L N+L ++Y++IP+ + V + L+ + ++ +
Sbjct: 125 YDYVIIDTNPSLGHLLNNALVITNYLIIPINSDLWAVESIDLILDAINKV 174
>gb|AAC45808.1| (AF015088) putative plasmid partitioning protein; ParA [Rhodococcus
erythropolis]
Length = 258
Score = 92.4 bits (226), Expect = 5e-18
Identities = 68/239 (28%), Positives = 118/239 (48%), Gaps = 11/239 (4%)
Query: 3 TVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-IGMDVVNYEDKN 61
TVI++ NQKGG GK+T L L + S G + L++D+DPQ N + AL I V Y
Sbjct: 2 TVIAVVNQKGGSGKSTTVLGLASAASARGIETLVIDLDPQCNASEALGIVYPVEGYTAAE 61
Query: 62 VGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKAL-----KPI 116
+ ++++ V +N+ +IP L L+ +++ + E+RL AL +
Sbjct: 62 LLAADFPGTALDAVHASSWDNVAVIPGDLDLA--DLDAVAGLGVEQRLRAALDGEDWQGR 119
Query: 117 FPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEG 176
FP I+ID PPS+G + N+L A+D L+ E S+ G+ + + I+ N
Sbjct: 120 FP---LILIDCPPSVGKLVSNALIAADTALVATEPSFMASRGVSKILQAIETIQRYYNPA 176
Query: 177 LRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEP 235
L + G++ + Q + R E++E D + +P+ A+ +A + + I + P
Sbjct: 177 LTVAGVLIGRVPAQGREAAHRTAEIREALGDQVLPLVVPQRAAVAEAAGDRRPIHQVRP 235
>gi|11497239 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|2182756|gb|AAB63434.1| (U42599) OrfC [Borrelia
burgdorferi] >gi|2935186|gb|AAC35439.1| (AF022479)
possible plasmid partition protein; orfC [Borrelia
burgdorferi] >gi|2935206|gb|AAC35455.1| (AF022483)
possible plasmid partition protein; orfC [Borrelia
burgdorferi] >gi|6382260|gb|AAF07574.1|AE001579_3
(AE001579) plasmid partition protein, putative [Borrelia
burgdorferi]
Length = 249
Score = 92.4 bits (226), Expect = 5e-18
Identities = 57/162 (35%), Positives = 96/162 (59%), Gaps = 6/162 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT---FALIGMDVVNYEDK 60
+I+IA+ KGGVGK+T A+ LS+ KVLL+D+D Q ++T + I D N +K
Sbjct: 8 IITIASIKGGVGKSTSAIIFTTLLSQ-DWKVLLIDMDTQASVTSYFYKKIIEDNFNLLEK 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
N+ ++ +++ +I + NL LIPS+++L E + +E +L+K L + +Y
Sbjct: 67 NIYEVLKGNVLIDNSVINISNNLDLIPSYISLHKFNKEAITF--KEIKLQKQLLNLQSNY 124
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLM 162
DYIIID PS+ L N+L SDY+++P+ + V ++L+
Sbjct: 125 DYIIIDTNPSLDYTLTNALVCSDYIIVPITAEKWAVESLELL 166
>gi|11496914 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7451145|pir||D70209 conserved hypothetical protein
BBA20 - Lyme disease spirochete plasmid A/lp54
>gi|2690246|gb|AAC66247.1| (AE000790) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 250
Score = 92.1 bits (225), Expect = 6e-18
Identities = 59/169 (34%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT---FALIGMDVVNYEDK 60
VI+IA+ KGGVGK+T +L LS + KVLL+D+D Q + T F I + ++ ++
Sbjct: 8 VITIASIKGGVGKSTTSLIFATLLS-IKCKVLLIDIDTQASTTSYFFNKIKDNNIDLINR 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
N+ ++ +++ LI + +NL LIPS+LTL E + +E +L++ LK + Y
Sbjct: 67 NIYEVLISNLHIDNALITINKNLDLIPSYLTLHKFNSESIPY--KEFKLKEQLKLLSNHY 124
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMI 169
DYII+D PS+ L N+L S+Y++IP+ + V + L M+ +
Sbjct: 125 DYIILDTNPSLDFTLTNALVCSNYIIIPITAEKWAVESLDLFTFFMNKL 173
>pir||C71105 probable cell division inhibitor MinD - Pyrococcus horikoshii
>gi|3257018|dbj|BAA29701.1| (AP000003) 245aa long
hypothetical cell division inhibitor MinD [Pyrococcus
horikoshii]
Length = 245
Score = 92.1 bits (225), Expect = 6e-18
Identities = 66/252 (26%), Positives = 127/252 (50%), Gaps = 21/252 (8%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M +ISI + KGG GKTT+ NL +L +G+KVL VD D ++G+D VN
Sbjct: 1 MTRIISIVSGKGGTGKTTVTANLSVALGEMGRKVLAVDGDLTMANLSLVLGVDDVNI--- 57
Query: 61 NVGTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD 119
+ ++ ++ +ED + + EN++++P A + E + + R+L + +K +
Sbjct: 58 TLHDVLAGDAKLEDAIYMTQFENVYILP-----GAVDWEHVIKAD-PRKLPEVIKSLKGK 111
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
YD+I+ID P + + ++++ + + ++ + + + M + GL +
Sbjct: 112 YDFILIDCPAGLQLDAMSAMLSGEEAILVTNPE------ISCLTDTMKVGMVLKKAGLAI 165
Query: 180 LGIVPNKFTKQTK-VPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGK 238
LG + N++ + + +P +++ D P+L IP+ I + EG +Y+P K
Sbjct: 166 LGFILNRYGRSERDIPPEAAQDVM----DVPLLAVIPEDPVIREGTLEGIPAVKYKPESK 221
Query: 239 ASKAFEKLAREV 250
++AF KLA EV
Sbjct: 222 GAQAFIKLAEEV 233
>gb|AAF34248.1|AF168003_3 (AF168003) putative Soj [Desulfovibrio gigas]
Length = 243
Score = 92.1 bits (225), Expect = 6e-18
Identities = 68/242 (28%), Positives = 121/242 (49%), Gaps = 8/242 (3%)
Query: 11 KGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTLMTRES 70
KGGVGKTT A++L L+ K LLVD D Q F ++G+ + + L+ ++
Sbjct: 4 KGGVGKTTTAVHLAAGLALNNYKTLLVDCDTQGQAAF-MLGI----RPNDGLADLILGDT 58
Query: 71 SVEDVLIEVEENLHLIPSHLTLSAKEIEI-MNTYNRERRLEKALKPIFPDYDYIIIDNPP 129
+ +++ +NL L+ +L+ + I Y E L +AL+PI + +II+D P
Sbjct: 59 PPDKAMLKARDNLWLLSGGKSLAKIKRHITRKDYAGENTLAEALRPIERAFQFIILDTSP 118
Query: 130 SMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVPNKFTK 189
S VN L + +L P+ L + G+ + +R+ N G+ L ++P +K
Sbjct: 119 SWDSLTVNVLFYAQELLAPISLEVMSIQGLAEFLRNFAALRKH-NPGVTLKYLLPMHLSK 177
Query: 190 QTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFEKLARE 249
+K QA L+ L++ Y + T I + + +A A G +++EY + K F +L ++
Sbjct: 178 PSKNSQAILESLEKFY-GKYLCTPIRYSPKLAEAPAYGMTVYEYAGSDNVVKDFRELLKD 236
Query: 250 VI 251
V+
Sbjct: 237 VL 238
>gi|11497362 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|6382383|gb|AAF07694.1|AE001582_2 (AE001582) plasmid
partition protein, putative [Borrelia burgdorferi]
Length = 262
Score = 91.7 bits (224), Expect = 8e-18
Identities = 55/203 (27%), Positives = 112/203 (55%), Gaps = 10/203 (4%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+++IA+ KGGVGK+T+ + Y L LGKK+L+VD+DPQ ++T + V N E N
Sbjct: 7 ILTIASLKGGVGKSTLTILFSYLLKDLGKKILIVDMDPQNSIT-SYFSNYVHNVEIYNTY 65
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYN--RERRLEKALKPIFPDYD 121
+++ S + + ++ +++ +IP+H L +E ++ E R+E+ + ++D
Sbjct: 66 SMLKGGVSFNNCVGKINDHIFIIPAHPILENFNLEPIDYKEIVLELRIEQNISAY--EFD 123
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
YI++D PP + N+L +D+++IP+++ + + ++ N++ + + +
Sbjct: 124 YILLDTPPHRDFLVKNALNITDHIIIPVQVERWSIESFTILMNMIENF-QIIKKKIYTTS 182
Query: 182 IVPNKFTKQTKVPQARLKELKEL 204
IV N+F K LK+++ L
Sbjct: 183 IVENQFIKNRNT----LKDIERL 201
>gi|10956770 plasmid replication protein [Xylella fastidiosa]
>gi|11362535|pir||C82868 plasmid replication protein
XFa0060 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9112297|gb|AAF85628.1|AE003851_59 (AE003851) plasmid
replication protein [Xylella fastidiosa]
Length = 254
Score = 91.7 bits (224), Expect = 8e-18
Identities = 64/231 (27%), Positives = 119/231 (50%), Gaps = 20/231 (8%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQ--FNLTF-----ALIGMDVVN 56
++++ANQKGGVGK+T+ ++L Y+ +G +VLLVD+D Q +LTF A G+
Sbjct: 3 ILAVANQKGGVGKSTLTVHLAYAAMEVGLRVLLVDMDKQGSASLTFQAKEGATAGLVASK 62
Query: 57 YEDKNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPI 116
D + + +I + L L + E +I+ RR +AL+ +
Sbjct: 63 LYDAEPNGEQPQTLNDRLAIIRADNGL------LAIDKAENQII------RRPGQALRRL 110
Query: 117 FPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREE-TNE 175
+D +ID PP +G+ L+ SL A+DYV+ P+ + + + G+ + + ++R + N
Sbjct: 111 CEGFDLCLIDTPPLLGVRLMASLAAADYVVTPVSVGLYELAGVADLMQTIHVVRTQGFNP 170
Query: 176 GLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAE 226
L+ +GI+P K ++ + L L++ Y A + +P+ + +A A+
Sbjct: 171 RLKHVGILPMKTNNRSTEEREALDALRQRYGAAIMPEVLPERAPVRQAIAK 221
>gi|11496614 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7451146|pir||F70226 conserved hypothetical protein
BBE19 - Lyme disease spirochete plasmid E/lp25
>gi|2689958|gb|AAC66029.1| (AE000785) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 252
Score = 91.3 bits (223), Expect = 1e-17
Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 6/162 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFA---LIGMDVVNYEDK 60
+++I + KGGVGK+T A+ LS+ KVLL+D DPQ + T L+ V+ +
Sbjct: 8 IVAICSIKGGVGKSTSAIIFSTLLSKK-YKVLLIDADPQASTTSYFSDLLEEQGVDVSKQ 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
N+ ++ + ++ + NL+++PS++ L + N +E RL+ +LK + Y
Sbjct: 67 NIYEVLADKKNINSSTFRLNNNLYILPSYIYLYLFYDD--NIPFKETRLKDSLKLLKHKY 124
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLM 162
DYIIID PS+GI L N L S+Y++IP+ + V MQL+
Sbjct: 125 DYIIIDTSPSLGIILTNVLVVSNYIIIPMTAQKWSVESMQLL 166
>gi|11497171 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|2935196|gb|AAC35447.1| (AF022481) possible plasmid
partition protein; orfC [Borrelia burgdorferi]
>gi|6382192|gb|AAF07508.1|AE001577_22 (AE001577) plasmid
partition protein, putative [Borrelia burgdorferi]
Length = 251
Score = 91.3 bits (223), Expect = 1e-17
Identities = 57/194 (29%), Positives = 107/194 (54%), Gaps = 16/194 (8%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I+IA+ KGGVGK+ +++ Y LS + KVL+VD+DPQ +LT + + N E NV
Sbjct: 8 IITIASIKGGVGKSMLSIIFSYILSEMNNKVLIVDLDPQNSLTSYFL-QYIRNIELNNVY 66
Query: 64 TLMTRESSV--EDVLIEVEENLHLIPSHLTLSAKE------IEIMNTYNRERRLEKALKP 115
L+ R+ ++ + + + N+++IP+H L E E+M + ++ L
Sbjct: 67 YLLKRDQNIAFNEYINSINNNMYIIPAHPILCKFEKGDIPYKELMLEHIFDKNLH----- 121
Query: 116 IFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNE 175
+ ++DY++ID PPS+ L N+L + V+IP++ + V + ++ N + + +
Sbjct: 122 -YYNFDYVVIDTPPSLSSLLFNALNITHKVIIPIQAERWSVESLPILMNEIKEVEIIRKK 180
Query: 176 GLRLLGIVPNKFTK 189
+ +L I+ N+F K
Sbjct: 181 NIDVL-IIENQFIK 193
>gb|AAD37842.1|AF109075_4 (AF109075) unknown [Clostridium difficile]
Length = 298
Score = 90.9 bits (222), Expect = 1e-17
Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 16/215 (7%)
Query: 11 KGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-----IGMDVVN-YEDKNVGT 64
KGGVGK+ ++ Y +L KVL++D D Q LT L + + VN YE G
Sbjct: 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFEVELPRVNFYEGLKNGN 104
Query: 65 LMTRESSVEDVLIEVEENLHLIPS--HLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
L + +I + +NL LIP L L K N R L L P+ DYD
Sbjct: 105 LASS-------IIHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDL 157
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
IIID P+ ++ N++ ASDYV+IPL+ +Q + + ++E+ N GL ++G
Sbjct: 158 IIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGF 217
Query: 183 VPNKFTKQTKVPQARLKEL-KELYPDAPILTTIPK 216
VP + ++ L+EL KE D + I K
Sbjct: 218 VPYLVDTDSATIKSNLEELYKEHKEDNLVFRNIIK 252
>pir||S45079 hypothetical protein delta - Streptococcus pyogenes plasmid pDB101
and pBT233 >gi|2145590|pir||S68604 hypothetical protein
delta - Streptococcus pyogenes plasmid pBT233
>gi|456367|emb|CAA45932.1| (X64695) ORF delta
[Streptococcus pyogenes] >gi|496508|emb|CAA47085.1|
(X66468) orf delta [Streptococcus pyogenes]
>gi|496509|emb|CAA47086.1| (X66468) orf delta'
[Streptococcus pyogenes] >gi|739952|prf||2004266E repS
downstream ORF [Streptococcus pyogenes]
Length = 298
Score = 90.1 bits (220), Expect = 2e-17
Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 11 KGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-----IGMDVVN-YEDKNVGT 64
KGGVGK+ ++ Y +L KVL++D D Q LT L + + VN YE G
Sbjct: 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGN 104
Query: 65 LMTRESSVEDVLIEVEENLHLIPS--HLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
L + ++ + +NL LIP L L K N R L L P+ DYD
Sbjct: 105 LASS-------IVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDL 157
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
IIID P+ ++ N++ ASDYV+IPL+ +Q + + ++E+ N GL ++G
Sbjct: 158 IIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGF 217
Query: 183 VPNKFTKQTKVPQARLKEL 201
VP + ++ L+EL
Sbjct: 218 VPYLVDTDSATIKSNLEEL 236
>gb|AAD46128.1|AF078924_7 (AF078924) putative ParA [Plasmid pM3]
Length = 255
Score = 89.7 bits (219), Expect = 3e-17
Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 10/252 (3%)
Query: 6 SIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTL 65
++ANQKGGVGKTT+ +L + GK+VL++D+D F D L
Sbjct: 5 AVANQKGGVGKTTLEAHLACYAAEQGKRVLVLDLDESDLSQFFPPTADDDETPYLLASQL 64
Query: 66 MTRESSVEDVLIEVEENLHLIPSHLTL---SAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
T + +V N+ LI + + L +++++ ++ KAL ++D
Sbjct: 65 FTGDHEGYQPR-QVAPNIWLIEADVALLDVDDMDLDVVTNFS------KALDRFHGEFDL 117
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
+ID PP++ ++ +L ASD V+ P +S F + M + + ++++ N GLR LG
Sbjct: 118 CLIDTPPNLQRRMIAALAASDSVVTPFNISAFTLARMPKLMATIETVQDQYNPGLRFLGF 177
Query: 183 VPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKA 242
+PN ++ L L+E + DA I I KA A G ++ +G A
Sbjct: 178 LPNLINSRSSEELEILPSLREEHGDAMFDEQITHRPCINKALANGNPVWRKARSGSQRDA 237
Query: 243 FEKLAREVISIV 254
+++ R +++
Sbjct: 238 GKEMKRACAAVL 249
>sp|Q57633|Y169_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0169 >gi|2144954|pir||B64321
cell division inhibitor MinD homolog MJ0169 -
Methanococcus jannaschii >gi|1590922|gb|AAB98154.1|
(U67474) cell division inhibitor minD [Methanococcus
jannaschii]
Length = 263
Score = 89.3 bits (218), Expect = 4e-17
Identities = 65/252 (25%), Positives = 128/252 (50%), Gaps = 22/252 (8%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK--N 61
+I+IA+ KGGVGKTT + +L +L++LGKKVL +D D ++ A +G+ + N E K +
Sbjct: 5 IITIASGKGGVGKTTTSASLAVALAKLGKKVLAIDGD----ISMANLGI-LFNMEKKKPS 59
Query: 62 VGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYD 121
+ +++ E+ V D + + + ++++P+ L+L + ++ L + + D+D
Sbjct: 60 LHEVLSEEADVRDAIYKHKTGVYVLPTSLSLEGYKKSDIDL------LPDVVNEVADDFD 113
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
Y+IID P + + L +D +L+ + F +I + + + G L+G
Sbjct: 114 YVIIDAPAGLNREMATHLAIADKLLLVVTPEMFSII------DAVRLKESAEMAGTPLMG 167
Query: 182 IVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASK 241
+V N+ + + E+ E+ +L +P+ + A + S+ EY N AS+
Sbjct: 168 VVLNRVGRD--FGEMGRDEI-EMLIKGKVLVEVPEDENVRSAALKKMSVIEYRKNSPASQ 224
Query: 242 AFEKLAREVISI 253
A+ KLA + +
Sbjct: 225 AYMKLASIIAGV 236
>pir||I40877 hypothetical protein 298 (DR1) - Clostridium perfringens
>gi|841201|gb|AAC43479.1| (U18931) ORF298 [Clostridium
perfringens]
Length = 298
Score = 88.5 bits (216), Expect = 7e-17
Identities = 63/199 (31%), Positives = 96/199 (47%), Gaps = 15/199 (7%)
Query: 11 KGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-----IGMDVVN-YEDKNVGT 64
KGGVGK+ ++ Y + KVL++D D Q LT L + + VN YE G
Sbjct: 45 KGGVGKSKLSTMFAYLTDKFNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGN 104
Query: 65 LMTRESSVEDVLIEVEENLHLIPS--HLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
L + ++ + +NL LIP L L K N R L L P+ DYD
Sbjct: 105 LASS-------IVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDL 157
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
IIID P+ ++ N++ ASDYV+IPL+ +Q + + ++E+ N GL ++G
Sbjct: 158 IIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGF 217
Query: 183 VPNKFTKQTKVPQARLKEL 201
VP + ++ L+EL
Sbjct: 218 VPYLVDTDSATIKSNLEEL 236
>pir||I40880 hypothetical protein 298 (DR2) - Clostridium perfringens
>gi|841204|gb|AAC43482.1| (U18931) ORF298 [Clostridium
perfringens]
Length = 298
Score = 88.5 bits (216), Expect = 7e-17
Identities = 63/199 (31%), Positives = 96/199 (47%), Gaps = 15/199 (7%)
Query: 11 KGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-----IGMDVVN-YEDKNVGT 64
KGGVGK+ ++ Y + KVL++D D Q LT L + + VN YE G
Sbjct: 45 KGGVGKSKLSTMFAYLTDKFNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGN 104
Query: 65 LMTRESSVEDVLIEVEENLHLIPS--HLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDY 122
L + ++ + +NL LIP L L K N R L L P+ DYD
Sbjct: 105 LASS-------IVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDL 157
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
IIID P+ ++ N++ ASDYV+IPL+ +Q + + ++E+ N GL ++G
Sbjct: 158 IIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGF 217
Query: 183 VPNKFTKQTKVPQARLKEL 201
VP + ++ L+EL
Sbjct: 218 VPYLVDTDSATIKSNLEEL 236
>gb|AAF27301.1|AF154674_2 (AF154674) ParA [Lactococcus lactis subsp. lactis]
>gi|6739592|gb|AAF27325.1| (AF178424) ParA [Lactococcus
lactis]
Length = 262
Score = 87.8 bits (214), Expect = 1e-16
Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 24/243 (9%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNL--TFALIGMDVVNYEDKN 61
+IS++ KGGVGKTTI N G LSR G KVLL+D D Q +L T+ L N
Sbjct: 3 IISVSAVKGGVGKTTITFNFGEWLSRQGYKVLLIDTDHQCSLSQTYNLF---------TN 53
Query: 62 VGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALK---PIFP 118
T+ + E + ++ +NL +IP+ L E+E+ + +N++ L L+
Sbjct: 54 ENTIYNAFMNEEVEIHKIHDNLSIIPASPMLDELEVELSSKHNKDLLLMMWLQDNVDRIK 113
Query: 119 DYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEG-- 176
++D+I+ID P N++ S Y+L P+E S +G + L+ + ++E +
Sbjct: 114 EFDFILIDCHPDFQTVTKNAIAVSHYILSPIEPSQYGYMSKSLLIERLQNFKDEVIDART 173
Query: 177 -----LRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIF 231
+ V N+ TK + +++ + D + IP+ ++ +G +
Sbjct: 174 RETYITAIPYFVGNRIRHNTKSSREFSEKISQ---DKGTIAMIPEKELFNRSTLDGVPLV 230
Query: 232 EYE 234
E E
Sbjct: 231 EME 233
>gi|10957571 virulence plasmid ParA family protein pGP5-D [Chlamydia muridarum]
>gi|7190956|gb|AAF39717.1| (AE002162) virulence plasmid
ParA family protein pGP5-D [Chlamydia muridarum]
Length = 268
Score = 87.8 bits (214), Expect = 1e-16
Identities = 63/252 (25%), Positives = 129/252 (51%), Gaps = 12/252 (4%)
Query: 11 KGGVGKTTIALNLGYSLSR-LGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTLMTRE 69
KGG GKTT++LN+G +L++ LGK+VLL+D+DPQ NL+ L N+ K + +M
Sbjct: 14 KGGTGKTTLSLNVGCNLAQFLGKRVLLIDLDPQSNLSSGLGASIEGNH--KGLHEVMCAS 71
Query: 70 SSVEDVLIEVEEN-LHLIP-SHLTLSAKEIEIMNTYNRERRL--EKALKPIFPDYDYIII 125
+ ++ ++ + ++ + +IP S L+ +E + RL ++ P+ YD I+
Sbjct: 72 NDLKSIICKTKKTGVDIIPASFLSEQFREFSTNGIPSSNLRLFLDEYCSPL---YDVCIV 128
Query: 126 DNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVPN 185
D PPS+G + A D +++ L F ++G+Q + + I + E +LG+ +
Sbjct: 129 DTPPSLGGLTKEAFIAGDKLIVCLIPEPFSILGLQKIREFLISIGKPEEE--HILGVALS 186
Query: 186 KFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFEK 245
+ ++ Q + ++ +Y + T I + I++ ++ + S+ P +A+
Sbjct: 187 FWDDRSSTNQTYIDIIESIYENKIFSTKIRRDISLSRSLLKEDSVINVYPTSRAATDILN 246
Query: 246 LAREVISIVEGQ 257
L E+ +++ +
Sbjct: 247 LTHEISALLNSK 258
>emb|CAA63500.1| (X92946) soj [Lactococcus lactis]
Length = 255
Score = 87.0 bits (212), Expect = 2e-16
Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 23/263 (8%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQ--FNLTFALIGMDVVNYE 58
M VI+ N KGGV KTT A N+ LS KKVLL+D DPQ +LTF + ++
Sbjct: 1 MSKVIAFYNNKGGVAKTTTATNVAGVLSLKKKKVLLIDGDPQGHTSLTFGVDSDEL---- 56
Query: 59 DKNVGTLMTRESSVEDV---LIEVEENLHLIPSHLTLSAKEIEIMN--TYNRERRLEKAL 113
+G +T S + I+V + L +IPS+ +LS I++ + R + L+ +
Sbjct: 57 QTTLGAYLTSNWSAKKASKYFIKVNDYLDVIPSNQSLSDFIIDVSSEEPKTRNKHLKNFI 116
Query: 114 KPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREET 173
+ + DYDYII D P++ I L N + D +++ + V + I ++
Sbjct: 117 ESVKNDYDYIIFDMAPAVDIVLENIVEIVDDLIVVAVPETYAVKNAETTLK----ITDDK 172
Query: 174 NEGLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTT---IPKAIAIEKAQAEGK-- 228
N +R IVP K TK + L+ L+E+ I T IP IA +A + +
Sbjct: 173 NVNVRY--IVPTKTQLNTKTHKFMLENLREVAQAHNIKMTDTYIPNLIAFSEAVSIYELP 230
Query: 229 -SIFEYEPNGKASKAFEKLAREV 250
++ E A K +EKL +E+
Sbjct: 231 LALIEDSRYKNAKKYYEKLVQEL 253
>gb|AAB17955.1| (U63319) Orf1 [Borrelia hermsii]
Length = 248
Score = 86.6 bits (211), Expect = 3e-16
Identities = 53/162 (32%), Positives = 90/162 (54%), Gaps = 6/162 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL---IGMDVVNYEDK 60
+I+IA+ KGGVGK+T A+ +S+ VLL+D+D Q +LT + +N E
Sbjct: 8 IITIASIKGGVGKSTSAILFSTIISK-NSNVLLIDMDAQASLTSYFNEYLEKSQINVEYT 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
N+ ++ + +++ + + +NL IPS+L L + N +E RL+KAL I Y
Sbjct: 67 NIYEILRKNMDIKNSICTINQNLDFIPSYLNLHFFNND--NLPFKENRLKKALYFIKNAY 124
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLM 162
DYIIID PS+ L+N+L SD ++ P+ + + ++ +
Sbjct: 125 DYIIIDTNPSLDFTLINALVVSDLIISPIPAEKWSIESLEAL 166
>gb|AAC02983.1| (AF036766) replication-associated protein A [Lactobacillus reuteri]
Length = 295
Score = 86.6 bits (211), Expect = 3e-16
Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 29/208 (13%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYE-DKNVG 63
I N KGGVGKTT ++ Y L++LG K L+ D+DPQ N T L + +E D +G
Sbjct: 4 ILYGNMKGGVGKTTNSVMTAYQLAKLGYKTLVCDLDPQANATQLLRRTYGLQHETDLQIG 63
Query: 64 TLM---TRESSVEDVLIEVEENLHLIPS-------------HLTLSAKEIEIMNTYNRER 107
M E +++ ++ + +NL+L+PS L ++IE ++ +
Sbjct: 64 KTMMVALTEENIKPAIVNIMDNLYLLPSSEDFKNYPDFLEMKFMLDKEKIESGDSTTLQS 123
Query: 108 RLEKA-----------LKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGV 156
+ K L + +YD++IID PP++ IF +++ A+D+V+I L+ +
Sbjct: 124 EMSKVKEQRIAYFAQQLAKVRDEYDFVIIDVPPTLSIFTDSAIYATDFVIIVLQTQQRSL 183
Query: 157 IGMQLMFN-LMSMIREETNEGLRLLGIV 183
G + F L M + N + +LG++
Sbjct: 184 DGAETFFEYLQQMYNDYANIDIDILGVL 211
>gi|11497207 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|6382228|gb|AAF07543.1|AE001578_14 (AE001578) plasmid
partition protein, putative [Borrelia burgdorferi]
Length = 249
Score = 85.8 bits (209), Expect = 4e-16
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT---FALIGMDVVNYEDK 60
+I+IA+ KGGVGK+T A+ L++ KVLL+D+D Q + T + I ++
Sbjct: 8 IITIASIKGGVGKSTSAIIFATLLAQK-YKVLLIDIDTQASTTSYYYDDIQKSSIDLRKN 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTL-SAKEIEIMNTYNRERRLEKALKPIFPD 119
N+ ++ + + ++ V NL LIPS+LTL S +T++ E RL+K LK I
Sbjct: 67 NIYEVLIEKLDINRSIVNVANNLDLIPSYLTLHSINAFGYKHTFD-EFRLKKELKHIDVG 125
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREE 172
Y++IIID PPS+ L N+L + V++PL + + L+ M I E
Sbjct: 126 YNFIIIDTPPSLDFTLTNALVCCNNVIVPLTAEKWTIESFDLLKFFMEKIGVE 178
>gi|10955986 orf 406; similarity to SOPA_ECOLI sopa protein (protein a)
[Coxiella burnetii] >gi|10956022|ref|NP_052844.1|
hypothetical protein [Coxiella burnetii]
>gi|2126370|pir||S68866 qsopA protein - Coxiella
burnetii plasmid QpH1 >gi|407374|emb|CAA53106.1|
(X75356) orf 406; similarity to SOPA_ECOLI sopa protein
(protein a) [Coxiella burnetii]
>gi|476745|gb|AAA69864.1| (L28041) qsopA gene product
[Plasmid QpH1] >gi|757815|emb|CAA59789.1| (X85789)
similarity to SOPA_ECOLI sopa protein (a) [Coxiella
burnetii] >gi|2706525|emb|CAA75819.1| (Y15898) putative
SopA protein (protein a) [Coxiella burnetii]
>gi|4928232|gb|AAD33476.1|AF131076_2 (AF131076)
hypothetical protein [Coxiella burnetii]
>gi|1581755|prf||2117254A trans-acting factor [Coxiella
burnetii]
Length = 406
Score = 84.7 bits (206), Expect = 1e-15
Identities = 67/254 (26%), Positives = 132/254 (51%), Gaps = 14/254 (5%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGM--DV-VNYEDKN 61
I+I+N KGGVGKT A++LG ++ G + LL+D D Q T G+ D+ + YED
Sbjct: 118 IAISNLKGGVGKTETAVDLGKKIAIEGLRSLLLDFDAQGTATLISSGLIPDLELRYEDTI 177
Query: 62 VGTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMN--TYNRER------RLEKA 112
TL++ +++++++++ + +IP++L + ++ + N N +R RL ++
Sbjct: 178 TNTLISDPNNIKNIVLKTHFDGFDIIPANLAIQDCDLILPNDKENNNDRLGSPFLRLAES 237
Query: 113 LKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIG-MQLMFNLMSMIRE 171
LK I YD I+ID P++G+ +N++ A D ++IP+ S + L +M RE
Sbjct: 238 LKIIKNQYDVILIDCGPNLGLLTLNAIIACDGMIIPIPPSMNDYSSFIMYTATLRNMFRE 297
Query: 172 ETNEGLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIF 231
+N+ L L I+ +K + Q ++E + + + + + + KA E +I+
Sbjct: 298 LSNKKLDYLRILLSKHNSSNEALQME-NMMREQFGRYILSNHMCETVEVSKAANEIGTIY 356
Query: 232 EYEPNGKASKAFEK 245
+ + +A+ +
Sbjct: 357 DVSKPRGSREAYRR 370
>gb|AAC35451.1| (AF022482) possible plasmid partition protein; orfC [Borrelia
burgdorferi]
Length = 249
Score = 84.7 bits (206), Expect = 1e-15
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 6/173 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT---FALIGMDVVNYEDK 60
+I+IA+ KGGVGK+T A+ L++ KVLL+D+D Q + T + I ++
Sbjct: 8 IITIASIKGGVGKSTSAIIFATLLAQK-YKVLLIDIDTQASTTSYYYDDIQKSSIDLRKN 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTL-SAKEIEIMNTYNRERRLEKALKPIFPD 119
N+ ++ + + ++ V NL LIPS+LTL S +T++ E RL+K LK I
Sbjct: 67 NIYEVLIEKLDINRSIVNVANNLDLIPSYLTLHSINAFGYKHTFD-EFRLKKELKHIDVG 125
Query: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREE 172
Y++IIID PPS+ L N+L + V++PL + L+ M I E
Sbjct: 126 YNFIIIDTPPSLDFTLTNALVCCNNVIVPLTAEKWTTESFDLLKFFMEKIGVE 178
>sp|Q50314|SOJ_MYCPN SOJ PROTEIN HOMOLOG >gi|2127659|pir||S62837 protein soj homolog
K05_orf270 - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|2146528|pir||S73480 protein soj homolog K05_orf270 -
Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1209518|gb|AAC43646.1| (U34816) Soj protein
[Mycoplasma pneumoniae] >gi|1673815|gb|AAB95802.1|
(AE000017) ParA family of ATPases involved in chromosome
partition [Mycoplasma pneumoniae]
Length = 270
Score = 84.3 bits (205), Expect = 1e-15
Identities = 54/200 (27%), Positives = 108/200 (54%), Gaps = 13/200 (6%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRL--GKKVLLVDVDPQFNLTFALIGMDVVNYEDKN 61
+IS N KGGV KTT+A N+ SL +L ++ +++D+D Q N++ A G + +
Sbjct: 2 IISFVNNKGGVLKTTMATNVAGSLVKLCPEQRKVILDLDGQGNVS-ASFGQNPERLNNTL 60
Query: 62 VGTLMT------RESSVE--DVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKAL 113
+ L+ SS+E D L+ V E L ++P + L+ +I+I + + + +
Sbjct: 61 IDILLKVPKFNGANSSIEIDDCLLPVYEGLDILPCNFELNFADIDIARKKYKASDIAEIV 120
Query: 114 KPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREET 173
K + YD++++D PP+M + +++ SD ++IP E + ++G+ + + +E+
Sbjct: 121 KQLTRRYDFVLLDTPPNMATLVSTAMSLSDVIVIPFEPDQYSMLGLMRIVETIDTFKEK- 179
Query: 174 NEGLRLLGIVPNKFTKQTKV 193
N L+ + +VP K +T++
Sbjct: 180 NPNLKTI-LVPTKVNMRTRL 198
>gb|AAB69096.2| (U80928) RepA [Rhizobium etli]
Length = 408
Score = 84.3 bits (205), Expect = 1e-15
Identities = 70/277 (25%), Positives = 136/277 (48%), Gaps = 29/277 (10%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
V+S+ N KGG GKTT A +L L+ G ++L +D+DPQ +L+ AL G + + +VG
Sbjct: 125 VVSVMNFKGGSGKTTTAAHLAQYLAMRGYRILAIDLDPQASLS-ALFG----SQPETDVG 179
Query: 64 TLMTRESSV--EDVLIEVEE--------NLHLIPSHLTLSAKEIE----IMNTYNRER-- 107
T ++ +D + +E+ +LHLIP +L L E + +MN +
Sbjct: 180 PNETLYGAIRYDDEQVPIEQVVRGTYIPDLHLIPGNLELMEFEHDTPRALMNRKEGDTLF 239
Query: 108 --RLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGM-QLMFN 164
R+ + ++ I +YD ++ID PP +G +++LTA+ +L+ + V+ M Q +
Sbjct: 240 YGRISQVIEDIADNYDVVVIDCPPQLGYLTLSALTAATSILVTVHPQMLDVMSMNQFLAM 299
Query: 165 LMSMIREETNEGLRL----LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAI 220
+++RE N G + + + +F + L+ ++ + + + K A+
Sbjct: 300 TSNLLREIENAGAQFKFNWMRYLVTRFEPSDGPQNQMVGYLRSIFGENVLNFPMLKTTAV 359
Query: 221 EKAQAEGKSIFEYEPNGKASKAFEKLAREVISIVEGQ 257
A +++FE E G+ +++ A E ++ V +
Sbjct: 360 SDAGLTNQTLFEVE-RGQFTRSTYDRALEAMNAVNDE 395
>gb|AAG00324.1| (AF209440) unknown [Borrelia hermsii]
Length = 249
Score = 84.3 bits (205), Expect = 1e-15
Identities = 56/172 (32%), Positives = 92/172 (52%), Gaps = 4/172 (2%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT---FALIGMDVVNYEDK 60
+I+IA+ KGGVGK+T ++ L++ KVLL+D+D Q + T + I ++
Sbjct: 8 IITIASIKGGVGKSTSSIIFATLLAQK-HKVLLIDMDTQASTTSYFYEKIEDQNIDLRIN 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
N+ ++ + +V ++ VE NL LIPS+LTL + E +L+ LK + Y
Sbjct: 67 NIYEVLIDKLNVNSSILNVESNLDLIPSYLTLHSINAFGYKHTLSEFKLKNDLKYLNIKY 126
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREE 172
DYI+ID PPS+ L +SL +YV++P+ + + L+ M I E
Sbjct: 127 DYIVIDTPPSLDFTLTSSLICCNYVIVPMTAEKWTIESFDLLKFFMEKIALE 178
>gb|AAG20825.1| (AE005151) Spo0A activation inhibitor; SojC2 [Halobacterium sp.
NRC-1]
Length = 355
Score = 84.3 bits (205), Expect = 1e-15
Identities = 69/234 (29%), Positives = 108/234 (45%), Gaps = 14/234 (5%)
Query: 11 KGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNY-----EDKNVGTL 65
KGG GKTT ALNL L+ +K LLVD+D +LT L D + + +
Sbjct: 74 KGGFGKTTTALNLARELAHRNEKALLVDLDDNGHLTLNLGHRDAYQNGSGGDNENHAEAV 133
Query: 66 MTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKAL-KPIF-PDYDYI 123
+ E+ D ++ V L L PSH L E + + RL++ L +P+ DYDY+
Sbjct: 134 LVNEADPRDYIVNVAGGLDLFPSHADLEGVESTLKDAVQGSARLKQHLVEPLLGEDYDYV 193
Query: 124 IIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFN-LMSMIREETNEGLRLLGI 182
+ID P + G N++ A+ ++IPL G+ N L+ R + L +L +
Sbjct: 194 VIDCPANRGKLNDNAMFATGNLIIPLRPELGYETGLDNTVNRLVKPARRYFD--LDILAV 251
Query: 183 VPNKFTKQTKVPQARLKE--LKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYE 234
VP+ Q ++ QA L + LKE+ + + +P I E EY+
Sbjct: 252 VPSDL--QRRIDQATLDQELLKEITTRDGVASKVPNFAYISPEDWEATEAGEYD 303
>pir||S74955 hypothetical protein slr1597 - Synechocystis sp. (strain PCC 6803)
>gi|1652070|dbj|BAA16995.1| (D90902) hypothetical
protein [Synechocystis sp.]
Length = 298
Score = 83.9 bits (204), Expect = 2e-15
Identities = 75/302 (24%), Positives = 126/302 (40%), Gaps = 54/302 (17%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSR-LGKKVLLVDVDPQFNLTFALIG---MDVVN 56
M +IS N KGGVGKTT+ +NL L++ K+VL++D+D Q + T +L+ +
Sbjct: 1 MAKIISTVNMKGGVGKTTLTVNLATCLAKYFQKRVLVLDLDSQISATLSLMAPHDFAAIR 60
Query: 57 YEDKNVGTLMTR--------ESSVEDVL---IEVEENLHLIPSHLTLSAKEIEIMNTYNR 105
+ K + L+ + + D++ I E L LIP +IE+ + Y
Sbjct: 61 KKGKTLSYLLANAIQPNPYSKLDIFDIICPEICQIEGLELIPG-------DIELYDEYLV 113
Query: 106 ERRLEKA------------------------LKPIFPDYDYIIIDNPPSMGIFLVNSLTA 141
+L +A L P+ +YD++I+D P + + + A
Sbjct: 114 SEKLHQAAIATENPNFETVWNKFEGTLIKEMLAPVLEEYDFVILDCAPGYNLLTRSGIAA 173
Query: 142 SDYVLIPLELSYFGVIGMQLMFNLMSMIREETNE-----GLRLLGIV---PNKFTKQTKV 193
SD+ L+P V+GMQL+ + ++E + L+G+V
Sbjct: 174 SDFYLLPARPEPLSVVGMQLLERRIEKLKESHKASDDPLNINLIGVVFILSGGGLMSRYY 233
Query: 194 PQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFEKLAREVISI 253
Q + + P +IP + + KA + PN SKAF KL +E +
Sbjct: 234 NQVMRRVQTDFTPGQLFQQSIPMDVNVAKAVDSFMPVVTSMPNTAGSKAFIKLTQEFLQK 293
Query: 254 VE 255
VE
Sbjct: 294 VE 295
>gi|11497284 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|6382305|gb|AAF07618.1|AE001580_3 (AE001580) plasmid
partition protein, putative [Borrelia burgdorferi]
Length = 246
Score = 83.9 bits (204), Expect = 2e-15
Identities = 54/165 (32%), Positives = 95/165 (56%), Gaps = 12/165 (7%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIG------MDVVNY 57
+I+IA+ KGGVGK+T ++ L++ KVLL+D+D Q + T +D+VN
Sbjct: 8 IITIASIKGGVGKSTSSIIFATLLAQK-YKVLLIDLDTQASTTSYFCKKLENQKIDLVN- 65
Query: 58 EDKNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIF 117
KN+ ++ V + ++ ++ENL LIPS++TL E + ++E RL+ +L +
Sbjct: 66 --KNIYRVLKDTLDVNNAIVNIKENLDLIPSYITLHKFSNEFIP--HQELRLKDSLIFLK 121
Query: 118 PDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLM 162
DYDYI++D PS+ L N+L S+ V++P+ + + + L+
Sbjct: 122 QDYDYIVVDTNPSLDFTLSNALITSNCVIVPMTAEKWAIESLDLL 166
>pir||B69113 cell division inhibitor - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622975|gb|AAB86306.1| (AE000937)
cell division inhibitor [Methanobacterium
thermoautotrophicum]
Length = 259
Score = 83.5 bits (203), Expect = 2e-15
Identities = 67/254 (26%), Positives = 128/254 (50%), Gaps = 24/254 (9%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M VI++A+ KGGVGKTTI NLG +LS G++V+++D D ++GM+ +
Sbjct: 1 MTRVITVASGKGGVGKTTITANLGVALSTYGERVVVLDADIAMANLELILGME---GKSV 57
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
+ ++ +S+ED + E + ++P+ ++L + N + RLE AL + D
Sbjct: 58 TLHDVLAGNASIEDAVYEGPNGVRVVPAGISLEG----LRNV--KLDRLEDALAYLIEDT 111
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLI---PLELSYFGVIGMQLMFNLMSMIREETNEGL 177
D ++ID P + V +L A+D +L+ P S + +++ + + +
Sbjct: 112 DILLIDAPAGLEKDAVAALAAADELLLVTTPEVPSISDALKTKIVASKLD---------I 162
Query: 178 RLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNG 237
++G+V N+ +Q ++E++ + + P++ IP + +A A G+ I P
Sbjct: 163 NIIGVVINR--EQYDKTFLSVEEVETIL-EVPVIAVIPDDPEVSRAAAFGEPIVIKNPKS 219
Query: 238 KASKAFEKLAREVI 251
AS A +LA ++I
Sbjct: 220 PASNALMELAADLI 233
>sp|P05682|REPA_AGRRH POSSIBLE REPLICATION PROTEIN A >gi|77897|pir||A32534 replication
protein repA - Agrobacterium rhizogenes plasmid pRiA4b
>gi|39114|emb|CAA28527.1| (X04833) put. repA (AA 1-404)
[Agrobacterium rhizogenes] >gi|225615|prf||1307244B gene
repA [Agrobacterium tumefaciens]
Length = 404
Score = 83.1 bits (202), Expect = 3e-15
Identities = 68/254 (26%), Positives = 124/254 (48%), Gaps = 28/254 (11%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
VIS+ N KGG GKTT A +L L+ G +VL +D+DPQ +L+ AL G + + +VG
Sbjct: 121 VISVMNFKGGSGKTTTAAHLAQYLAMRGYRVLAIDLDPQASLS-ALFG----SQPETDVG 175
Query: 64 TLMTRESSV--EDVLIEVEE--------NLHLIPSHLTLSAKEIE----IMNTYNRER-- 107
T ++ +D + +E +LHLIP +L L E + +MN +
Sbjct: 176 PNETLYGAIRYDDEQVAIERVVRGTYIPDLHLIPGNLELMEFEHDTPRALMNRKEGDTLF 235
Query: 108 --RLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGM-QLMFN 164
R+ + ++ I +YD ++ID PP +G +++LTA+ +L+ + V+ M Q +
Sbjct: 236 YGRISQVIEDIADNYDVVVIDCPPQLGYLTLSALTAATSILVTVHPQMLDVMSMNQFLAM 295
Query: 165 LMSMIREETNEGLRL----LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAI 220
+++RE N G + + + +F + L+ ++ + + + K A+
Sbjct: 296 TSNLLREIENAGAKFKFNWMRYLITRFEPSDGPQNQMVGYLRSIFGENVLNFPMLKTTAV 355
Query: 221 EKAQAEGKSIFEYE 234
A +++FE E
Sbjct: 356 SDAGLTNQTLFEVE 369
>sp|P47706|SOJ_MYCGE SOJ PROTEIN HOMOLOG >gi|1361855|pir||I64251 SpoOJ regulator homolog
- Mycoplasma genitalium >gi|3845067|gb|AAC72491.1|
(U39729) soj protein (soj) [Mycoplasma genitalium]
Length = 269
Score = 82.3 bits (200), Expect = 5e-15
Identities = 50/200 (25%), Positives = 106/200 (53%), Gaps = 13/200 (6%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRL--GKKVLLVDVDPQFNLTFALIGMDVVNYEDKN 61
+IS N KGGV KTT+A N+ SL +L ++ +++D+D Q N++ A G + +
Sbjct: 2 IISFVNNKGGVLKTTMATNVAGSLVKLCPERRKVILDLDGQGNVS-ASFGQNPERLNNTL 60
Query: 62 VGTLMTRES--------SVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKAL 113
+ L+ ++D L+ V E L ++P + L+ +I+I + + + +
Sbjct: 61 IDILLKVPKFSGSNNFIEIDDCLLSVYEGLDILPCNFELNFADIDISRKKYKASDIAEIV 120
Query: 114 KPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREET 173
K + Y+++++D PP+M + +++ SD ++IP E + ++G+ + + +E+
Sbjct: 121 KQLAKRYEFVLLDTPPNMATLVSTAMSLSDVIVIPFEPDQYSMLGLMRIVETIDTFKEK- 179
Query: 174 NEGLRLLGIVPNKFTKQTKV 193
N L+ + +VP K +T++
Sbjct: 180 NTNLKTI-LVPTKVNVRTRL 198
>gi|11497082 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|1143399|emb|CAA60614.1| (X87127) ORF-C [Borrelia
burgdorferi] >gi|6382103|gb|AAF07421.1|AE001575_22
(AE001575) plasmid partition protein, putative [Borrelia
burgdorferi]
Length = 246
Score = 81.9 bits (199), Expect = 7e-15
Identities = 51/162 (31%), Positives = 92/162 (56%), Gaps = 6/162 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT---FALIGMDVVNYEDK 60
+I+IA+ KGGVGK+T A+ L LS+ KVLL+D+D Q ++T + + + +K
Sbjct: 8 IITIASIKGGVGKSTSAIILATLLSK-DNKVLLIDMDTQASVTSYFYKTLVESEFDLLEK 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
N+ ++ + D +I V+ N L+PS+L+L E + +E RL+ + K + Y
Sbjct: 67 NIYEVLKGNQLINDAIINVDHNFDLLPSYLSLHTFSEEPLPY--KEHRLKDSFKYLKFKY 124
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLM 162
++II+D P + L N+L S +V++P+ + + +QL+
Sbjct: 125 NFIILDTNPHLDSTLSNALVVSKHVIVPMTAEKWTIESLQLL 166
>gi|11497397 plasmid partition protein, putative [Borrelia burgdorferi]
>gi|1174343|emb|CAA60650.1| (X87201) orfC [Borrelia
burgdorferi] >gi|6382418|gb|AAF07728.1|AE001584_25
(AE001584) plasmid partition protein, putative [Borrelia
burgdorferi]
Length = 251
Score = 81.9 bits (199), Expect = 7e-15
Identities = 54/165 (32%), Positives = 95/165 (56%), Gaps = 12/165 (7%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALI------GMDVVNY 57
+I+IA+ KGGVGK+T A+ + L++ KVLL+D+D Q + T +D+V
Sbjct: 8 IITIASIKGGVGKSTSAIIMATLLAK-EHKVLLIDMDTQASTTSYFYKEILNQNIDIVKI 66
Query: 58 EDKNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIF 117
NV ++ + + D +++++ENL LIPS+LTL+ E + +E RL+ L+ +
Sbjct: 67 ---NVYRVLKEKIDINDSIVKIKENLDLIPSYLTLNKFLSESIPL--KELRLQNNLEFLK 121
Query: 118 PDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLM 162
Y Y+IID PS+ L N+L S+ +++P+ + V ++L+
Sbjct: 122 RRYHYVIIDTNPSLDYTLSNALMTSNCIIVPMTAEKWAVESLELL 166
>gi|10957157 conserved hypothetical protein [Lactococcus lactis]
>gi|11356449|pir||T43128 conserved hypothetical protein
- Lactococcus lactis plasmid pMRC01
>gi|3582227|gb|AAC56023.1| (AE001272) conserved
hypothetical protein [Lactococcus lactis]
Length = 265
Score = 81.9 bits (199), Expect = 7e-15
Identities = 69/242 (28%), Positives = 106/242 (43%), Gaps = 18/242 (7%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I+ KGGVGKTT+ LN L + GKKVLL+D+D Q NLT +
Sbjct: 3 IITFTAIKGGVGKTTLTLNYSDWLVKKGKKVLLIDLDHQCNLTTI---FQPTRRNNTIAE 59
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFP----- 118
E + E ++ ++ENL L+ + L ++ N N+E L LK F
Sbjct: 60 AFKDSEEAQEVIIDNIKENLDLVAGFIDLDELGSKLENNSNKEMLLFLWLKNNFEKLNIG 119
Query: 119 DYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGV-----IGMQLMFNLMSMIREET 173
YDYI+ID P N++ S+Y++ P+ S G + +L S+ +T
Sbjct: 120 SYDYILIDTHPDFSTITKNAVAISNYLVSPITPSEHGYSAKFDLEARLEKFRKSLFDYKT 179
Query: 174 NEGL--RLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIF 231
E L V N T L +K+ D +++TI + KA + SIF
Sbjct: 180 GETYVDAQLFFVANMIKHNTSTSHELLSHIKD---DETVISTISEREIFNKATTKHLSIF 236
Query: 232 EY 233
++
Sbjct: 237 DF 238
>emb|CAB43193.1| (AJ011655) replication protein Rep63B [Bacillus thuringiensis]
Length = 308
Score = 81.9 bits (199), Expect = 7e-15
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 9/221 (4%)
Query: 2 GTVISIANQKGGVGKTTIALNLGYSLSRL-GKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
G VI A QKGGVGKTT + S + KKVL +D D Q N T L + K
Sbjct: 4 GHVIINAQQKGGVGKTTDSCMESLVASLVFNKKVLFIDTDLQGNGTTFLAKSFKIEEMQK 63
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSA-KEIEIMNTYNRERR---LEKALKPI 116
+ + + ++ D +I + ENL +IP + + I N E R K L I
Sbjct: 64 TLMKCL-EDGNLSDGIINLHENLDMIPCGYDMRKYSDFLIENFKTTEERTFYFAKLLDKI 122
Query: 117 FPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQ-LMFNLMSMIREETNE 175
DYDYI ID PPS + + N++ ASD+V++ E F G Q L+F+ + + ++
Sbjct: 123 KYDYDYIFIDIPPSTDLKVDNAMVASDFVIVVQETQQFSYEGSQRLIFDYLQTLVDDFGH 182
Query: 176 --GLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTI 214
+ ++GI+P K+ + +K E + + + +TI
Sbjct: 183 LVKMNVVGILPVLLQKKRSLHNEIVKNTIETFGEENVFSTI 223
>gi|11496739 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7451147|pir||D70242 conserved hypothetical protein
BBI21 - Lyme disease spirochete plasmid I/lp28-4
>gi|2690083|gb|AAC66186.1| (AE000789) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 250
Score = 80.4 bits (195), Expect = 2e-14
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLT-FALIGMDVVNYE--DK 60
+I+IA+ KGGVGK+T ++ L LS+ KVLL+D D Q T + ++ N++
Sbjct: 8 IITIASLKGGVGKSTTSIILANLLSKK-HKVLLIDTDDQAATTSYYYNELETKNFDISKM 66
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERR-------LEKAL 113
N+G ++ + + +I VE N+ LIPS++T+ E+ Y + R L+ L
Sbjct: 67 NIGNVIKDGTDINKSIINVENNIALIPSYITVD----ELNGEYYYDNRHLPIEFSLKTKL 122
Query: 114 KPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLM 162
I +YDYIIID P L SL +S+YV+ P+ + V G + +
Sbjct: 123 NSIADNYDYIIIDTNPKRNFTLKLSLISSNYVISPMTAEKWAVEGFETL 171
>gi|10955188 IncC2 [Enterobacter aerogenes] >gi|7444174|pir||T08476 inclusion
membrane protein C 2 - Enterobacter aerogenes plasmid
R751 >gi|1572525|gb|AAC64420.1| (U67194) IncC2
[Enterobacter aerogenes]
Length = 254
Score = 80.0 bits (194), Expect = 3e-14
Identities = 67/261 (25%), Positives = 126/261 (47%), Gaps = 16/261 (6%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M T+++ A QKGG GKT +L + G +V ++D+D Q N +F L Y+
Sbjct: 1 MKTLVT-AIQKGGQGKTFATCHLAFDFLERGLRVAVIDLDTQGNASFTLSA-----YQSG 54
Query: 61 NVGTLMTRESSVEDVLI----EVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPI 116
+ + + +D+ E+L LI + L+ ++ M L ++ +
Sbjct: 55 YLASQLF-TGDTDDLRYWFGKREGESLALIAADANLA--NLDKMELSQAAAALRASVAAL 111
Query: 117 FPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEG 176
+D +ID PS+G+ + ++ +DY+L P+E+ + + GM+ M ++S +R++ N
Sbjct: 112 GEFFDVCLIDTAPSLGVAMTAAVLTADYMLSPIEMEAYSLQGMKKMVAVISNLRKQ-NPK 170
Query: 177 LRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPN 236
LR LG+VPNK + L L++ YP + +I +I +A E +++ +
Sbjct: 171 LRFLGMVPNKVDARKPRHVNNLATLQQAYPQLILPFSIGARDSIAEALGEQMPVWKIKKT 230
Query: 237 G--KASKAFEKLAREVISIVE 255
KA++ LA V + +E
Sbjct: 231 AARKATQEVRALADYVFTKME 251
>gi|10955189 IncC1 [Enterobacter aerogenes] >gi|6686301|sp|Q52312|INC1_ECOLI
INCC PROTEIN >gi|7444175|pir||T08477 inclusion membrane
protein C1 - Enterobacter aerogenes plasmid R751
>gi|1572526|gb|AAC64421.1| (U67194) IncC1 [Enterobacter
aerogenes]
Length = 358
Score = 80.0 bits (194), Expect = 3e-14
Identities = 67/261 (25%), Positives = 126/261 (47%), Gaps = 16/261 (6%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M T+++ A QKGG GKT +L + G +V ++D+D Q N +F L Y+
Sbjct: 105 MKTLVT-AIQKGGQGKTFATCHLAFDFLERGLRVAVIDLDTQGNASFTLSA-----YQSG 158
Query: 61 NVGTLMTRESSVEDVLI----EVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPI 116
+ + + +D+ E+L LI + L+ ++ M L ++ +
Sbjct: 159 YLASQLF-TGDTDDLRYWFGKREGESLALIAADANLA--NLDKMELSQAAAALRASVAAL 215
Query: 117 FPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEG 176
+D +ID PS+G+ + ++ +DY+L P+E+ + + GM+ M ++S +R++ N
Sbjct: 216 GEFFDVCLIDTAPSLGVAMTAAVLTADYMLSPIEMEAYSLQGMKKMVAVISNLRKQ-NPK 274
Query: 177 LRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPN 236
LR LG+VPNK + L L++ YP + +I +I +A E +++ +
Sbjct: 275 LRFLGMVPNKVDARKPRHVNNLATLQQAYPQLILPFSIGARDSIAEALGEQMPVWKIKKT 334
Query: 237 G--KASKAFEKLAREVISIVE 255
KA++ LA V + +E
Sbjct: 335 AARKATQEVRALADYVFTKME 355
>gi|10803634 sojD [Halobacterium sp. NRC-1] >gi|7444243|pir||T08304 sojD protein
- Halobacterium sp. (strain NRC-1) plasmid pNRC100
>gi|2822365|gb|AAC82871.1| (AF016485) sojD
[Halobacterium sp. NRC-1] >gi|10584178|gb|AAG20799.1|
(AE005148) Spo0A activation inhibitor; SojD
[Halobacterium sp. NRC-1]
Length = 257
Score = 79.6 bits (193), Expect = 3e-14
Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 2/228 (0%)
Query: 6 SIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNV-GT 64
+I+ QKGGVGKTT +N+ +L+ G +VL +D DPQ LT L + + ++
Sbjct: 5 AISQQKGGVGKTTNTINIAGALAHRGHQVLAIDADPQGYLTNTLGFREAYQSDPPSLYDA 64
Query: 65 LMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYII 124
+ T L+ ++P+++ + E +++ + R R+ + DYDY++
Sbjct: 65 IKTPHDHDAADLVVAHAEFDVLPANIDMFQLEQDLIASGRRPRQRFGDVLDQLQDYDYVL 124
Query: 125 IDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVP 184
ID PPS+G N L A++ ++IP+E V+ ++ + N + + + +R I+
Sbjct: 125 IDAPPSLGPINDNVLLAAEDIIIPVEADDSSVLAIEHLLNQIESLERGYDVDIRERAILI 184
Query: 185 NKFTKQTKVPQA-RLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIF 231
+ QA + ++ + + + AI+++ G SIF
Sbjct: 185 SNVNYPLDNEQADAIAWFEDTFDGRAPVFEVRNRAAIKRSLGAGGSIF 232
>gb|AAG20964.1| (AE005163) Spo0A activation inhibitor; SojE [Halobacterium sp.
NRC-1]
Length = 305
Score = 79.6 bits (193), Expect = 3e-14
Identities = 76/250 (30%), Positives = 117/250 (46%), Gaps = 29/250 (11%)
Query: 6 SIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYE--DKNVG 63
S ++ GGVGKTT A NL + +R G K L+V +DPQ L G+D E D V
Sbjct: 19 STYSEAGGVGKTTTAANLAVAHARAGLKPLVVPLDPQDGDLSRLFGVDTDRTESVDNIVR 78
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIF------ 117
++ R S D L+ E + +IP H LS ++ RE+ +A+ F
Sbjct: 79 HMIRRPSGEFDDLVRTVEGVDIIPEHNMLS----DLAEYLQREKDQAEAMGEAFGMHAQL 134
Query: 118 ---------PD-YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMS 167
PD YD +I D P + G L N++ A+ ++IP+E S G ++ + +L++
Sbjct: 135 LRVLQEAGVPDEYDVLICDPPATEGPHLYNAIHATRSLVIPVEPSAKGRAAVEGLESLVA 194
Query: 168 MIREETNEGLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTI-PKAIAIEKAQAE 226
+ E+ + + +L VP F K T+ + L E+ D PI I +A +E
Sbjct: 195 GLEEQLDVEVGVLAAVPVGF-KNTRDQRTILDEI-----DYPIPEVIGERASLMEGCWMR 248
Query: 227 GKSIFEYEPN 236
S FEY N
Sbjct: 249 QCSAFEYVRN 258
>sp|P10559|GP5D_CHLTR VIRULENCE PROTEIN PGP5-D (ORF5) (PROTEIN P-9) >gi|79355|pir||S01923
hypothetical protein 5 - Chlamydia trachomatis plasmids
>gi|581013|emb|CAA30425.1| (X07547) ORF 5 (AA 1-243)
[Chlamydia trachomatis] >gi|581015|emb|CAA29896.1|
(X06707) ORF7 [Chlamydia trachomatis]
Length = 243
Score = 78.8 bits (191), Expect = 6e-14
Identities = 61/235 (25%), Positives = 119/235 (49%), Gaps = 8/235 (3%)
Query: 23 LGYSLSR-LGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTLMTRESSVEDVLIEVE- 80
+G +L++ LGKKVLL D+DPQ NL+ L V K + ++ + ++ ++ E +
Sbjct: 1 MGCNLAQFLGKKVLLADLDPQSNLSSGLGAS--VRSNQKGLHDIVYTSNDLKSIICETKK 58
Query: 81 ENLHLIP-SHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSL 139
+++ LIP S L+ +E++I + +L + P YD IID PPS+G +
Sbjct: 59 DSVDLIPASFLSEQFRELDIHRGPSNNLKLFLN-EYCAPFYDICIIDTPPSLGGLTKEAF 117
Query: 140 TASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVPNKFTKQTKVPQARLK 199
A D ++ L F ++G+Q + +S + + E +LGI + + + Q +
Sbjct: 118 VAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEE--HILGIALSFWDDRNSTNQMYID 175
Query: 200 ELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFEKLAREVISIV 254
++ +Y + T I + I++ ++ + S+ PN +A++ KL E+ +I+
Sbjct: 176 IIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAEDILKLTHEIANIL 230
>pir||A72319 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981442|gb|AAD35987.1|AE001755_10 (AE001755)
conserved hypothetical protein [Thermotoga maritima]
Length = 275
Score = 78.0 bits (189), Expect = 1e-13
Identities = 59/232 (25%), Positives = 110/232 (46%), Gaps = 13/232 (5%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+IS+ + KGGVGK+ IA+NL +L G +VLL+D D F L+G K +
Sbjct: 15 IISVLSGKGGVGKSVIAVNLSLALKEKGLRVLLLDADVGFGSVEILLGF----MAPKTLK 70
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYI 123
+ED++ E + + ++ S + + +++ + N +R R ++ + + YDY+
Sbjct: 71 DFFKSNVRIEDIVFETKYGVDVLSSGIDM--EDLILFNLGDRRRFFDEFAR-LLRKYDYL 127
Query: 124 IIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIV 183
+ID PP L SD++++ +I + L+S+ E ++ +V
Sbjct: 128 VIDFPPGYNENLDQFYIQSDFLILVTSPEPTSIINTYTLIKLLSVKGITPEEIFLVMNMV 187
Query: 184 PNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEP 235
N K+ ++ RLK + E + + TI I++ Q +S+F EP
Sbjct: 188 RN--MKEGRLAADRLKRVVERF----VGFTIKNYFVIKEDQVVQRSVFLQEP 233
>gi|9507284 pGP5-D (gtg start codon) [Plasmid pCHL1] >gi|144469|gb|AAA91573.1|
(J03321) pGP5-D (gtg start codon) [Plasmid pCHL1]
>gi|448545|prf||1917253G pGP5-D gene [Chlamydia
trachomatis]
Length = 243
Score = 77.6 bits (188), Expect = 1e-13
Identities = 59/235 (25%), Positives = 119/235 (50%), Gaps = 8/235 (3%)
Query: 23 LGYSLSR-LGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTLMTRESSVEDVLIEVE- 80
+G +L++ LGKKVLL D+DPQ NL+ L V + K + ++ + ++ ++ E +
Sbjct: 1 MGCNLAQFLGKKVLLADLDPQSNLSSGLGAS--VRSDQKGLHDIVYTSNDLKSIICETKK 58
Query: 81 ENLHLIPSHLTLSA-KEIEIMNTYNRERRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSL 139
+++ LIP+ + +E++I + +L + P YD IID PPS+G +
Sbjct: 59 DSVDLIPASFSSEQFRELDIHRGPSNNLKLFLN-EYCAPFYDICIIDTPPSLGGLTKEAF 117
Query: 140 TASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVPNKFTKQTKVPQARLK 199
A D ++ L F ++G+Q + +S + + E +LGI + + + Q +
Sbjct: 118 VAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEE--HILGIALSFWDDRNSTNQMYID 175
Query: 200 ELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFEKLAREVISIV 254
++ +Y + T I + I++ ++ + S+ PN +A++ KL E+ +I+
Sbjct: 176 IIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAEDILKLTHEIANIL 230
>sp|Q9X2I3|MIND_THEMA SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443735|pir||A72200 septum site-determining protein
MinD - Thermotoga maritima (strain MSB8)
>gi|4982456|gb|AAD36932.1|AE001824_1 (AE001824) septum
site-determining protein MinD [Thermotoga maritima]
Length = 271
Score = 77.6 bits (188), Expect = 1e-13
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 21/255 (8%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMD---VVNY 57
MG VI + + KGGVGKTTI NLG +L++LG+KV L+D D ++G++ V
Sbjct: 1 MGNVIVVTSGKGGVGKTTITANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYTM 60
Query: 58 EDKNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIF 117
D G + +E+ V+ ++ +NL+L+P+ ++ KE+ N ++ +K +
Sbjct: 61 IDVVNGKVSPQEALVKHKML---KNLYLLPAS-QIATKEMISPND------MKAIVKELI 110
Query: 118 PDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGL 177
P +DYIIID+P + N++ ++ VL+ + + L+ E
Sbjct: 111 PHFDYIIIDSPAGIERGFRNAVAPAERVLVVTTPELPAISDADRVIGLL----ENFGFSD 166
Query: 178 RLLGIVPNKFTKQTKVPQARLKELKELYP--DAPILTTIPKAIAIEKAQAEGKSIFEYEP 235
+ ++ N+F K V + + ++ I+ IP + I A G +
Sbjct: 167 EKINVIINRF-KPHMVKKGEMLTTDDIKHTLSLEIIAVIPDSEDIIVASNTGIPV-SLNG 224
Query: 236 NGKASKAFEKLAREV 250
N + SK FE LAR +
Sbjct: 225 NSRISKNFENLARRI 239
>gi|10957451 chromosome partitioning ATPase, putative, ParA family [Deinococcus
radiodurans] >gi|7473446|pir||E75621 probable chromosome
partitioning ATPase, ParA family - Deinococcus
radiodurans (strain R1)
>gi|6460880|gb|AAF12584.1|AE001826_53 (AE001826)
chromosome partitioning ATPase, putative, ParA family
[Deinococcus radiodurans]
Length = 378
Score = 77.6 bits (188), Expect = 1e-13
Identities = 63/258 (24%), Positives = 117/258 (44%), Gaps = 6/258 (2%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
MG I++ N GG GKT + +L ++L+ LG +V ++D DPQ +LT D
Sbjct: 118 MGHRIALNNVSGGEGKTFLTFHLAFALADLGFRVAVLDCDPQASLTKRFGLHDEEGAHQS 177
Query: 61 NVGTLMTRESSVEDVLIE---VEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIF 117
T++ +D + E + + P++ L + IM R L +AL I
Sbjct: 178 GAETILPVFEVDDDPALPSPVTVEGIDVWPANRQLIDADTRIMTNMMRLGNLGEALDRIQ 237
Query: 118 PDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGL 177
YD+I++D P++ L S A+ L+P+ ++ G+ + + L+ + R++ +
Sbjct: 238 DQYDFILLDTRPNVSPLLTASTAAARLFLVPIG-AHKGLENLDELLRLVKLARKQ-DRSA 295
Query: 178 RLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNG 237
R+ +PNK T T++ + L+ + API + +A +A+ I + P
Sbjct: 296 RIAFFIPNKVT-STRMGKNVLQSISAYTEVAPISPPVRQATIGPEAELFRTGITRHAPKS 354
Query: 238 KASKAFEKLAREVISIVE 255
+ LA ++ E
Sbjct: 355 PLAGDIRTLANALVKATE 372
>pir||E37386 hypothetical protein 5 - Chlamydia trachomatis (serotype D) plasmid
pCHL1
Length = 243
Score = 77.3 bits (187), Expect = 2e-13
Identities = 57/227 (25%), Positives = 113/227 (49%), Gaps = 7/227 (3%)
Query: 30 LGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTLMTRESSVEDVLIEVE-ENLHLIPS 88
LGKKVLL D+DPQ NL+ L V + K + ++ + ++ ++ E + +++ LIP+
Sbjct: 9 LGKKVLLADLDPQSNLSSGLGAS--VRSDQKGLHDIVYTSNDLKSIICETKKDSVDLIPA 66
Query: 89 HLTLSA-KEIEIMNTYNRERRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLI 147
+ +E++I + +L + P YD IID PPS+G + A D ++
Sbjct: 67 SFSSEQFRELDIHRGPSNNLKLFLN-EYCAPFYDICIIDTPPSLGGLTKEAFVAGDKLIA 125
Query: 148 PLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVPNKFTKQTKVPQARLKELKELYPD 207
L F ++G+Q + +S + + E +LGI + + + Q + ++ +Y +
Sbjct: 126 CLTPEPFSILGLQKIREFLSSVGKPEEE--HILGIALSFWDDRNSTNQMYIDIIESIYKN 183
Query: 208 APILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFEKLAREVISIV 254
T I + I++ ++ + S+ PN +A++ KL E+ +I+
Sbjct: 184 KLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAEDILKLTHEIANIL 230
>gi|10803612 sojC [Halobacterium sp. NRC-1] >gi|10803691|ref|NP_046089.1| sojC
[Halobacterium sp. NRC-1] >gi|7484115|pir||T08282
regulatory protein homolog sojC - Halobacterium sp.
(strain NRC-1) plasmid pNRC100
>gi|2822343|gb|AAC82849.1| (AF016485) sojC
[Halobacterium sp. NRC-1] >gi|2822422|gb|AAC82928.1|
(AF016485) sojC [Halobacterium sp. NRC-1]
>gi|10584146|gb|AAG20773.1| (AE005145) Spo0A activation
inhibitor; SojC1 [Halobacterium sp. NRC-1]
Length = 312
Score = 77.3 bits (187), Expect = 2e-13
Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 26/272 (9%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGT 64
+S+ KGGVGK+TIA+NL L+ VLL+D+DP + + L D + D+ +G
Sbjct: 32 VSVCMLKGGVGKSTIAVNLARQLATHDHDVLLIDLDPNGHASVGLGFDDHYHNTDEGIGE 91
Query: 65 LMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIM--NTYNRERRLEK-ALKPIFPD-Y 120
+ E+ V+ + E ++PS L E EI+ + + L++ ++P+ D Y
Sbjct: 92 VFFDEADPTSVVYDTEYEFDILPSSEDLEQVEREIVVGDVFQPSALLKREVVEPLLGDEY 151
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQ-------------------- 160
D+I+ D+P N+L A+ +++PL + G++
Sbjct: 152 DFIVTDSPAYRSRLTDNALVATSNLVLPLAPGNEAMSGLERTIERQIAPLRKHMDVDVLA 211
Query: 161 LMFNLMSMIREETNEGLRLLGIVPNKFTKQTKVPQ-ARLKELKEL-YPDAPILTTIPKAI 218
L+ N++ ++ + +LL + + + Q ++P AR+ + + + D I
Sbjct: 212 LVPNMLDGRIDQQTQDRQLLERLNSHNSLQDRIPNFARITDWEAVGSGDISPTPGIRDRT 271
Query: 219 AIEKAQAEGKSIFEYEPNGKASKAFEKLAREV 250
+I KA E K + +Y+ N K F++LA V
Sbjct: 272 SITKAYGERKPLLDYDANCDQLKNFDELAHIV 303
>gb|AAD19734.1| (AF124349) ATP-binding protein [Zymomonas mobilis]
Length = 273
Score = 77.3 bits (187), Expect = 2e-13
Identities = 62/247 (25%), Positives = 120/247 (48%), Gaps = 8/247 (3%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
VI++A+ KGGVGKT + NL +LS++ ++ LL+D D ++GM+ D+ +
Sbjct: 11 VIAVASGKGGVGKTNVIANLTAALSKIKQRTLLLDCDLGMADAGIVLGMN----SDRTIE 66
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYI 123
++T EDV+ + L+L+P A I M+ +RRL +L+P +DYI
Sbjct: 67 DILTGRRQYEDVVQQGVFGLNLVPG--VNGAGRIMEMDAV-AKRRLVDSLRPWTKSFDYI 123
Query: 124 IIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIV 183
++DNP ++ + ++D V++ L + + L++ + + E L + +V
Sbjct: 124 LLDNPSGASSSSLSLMASADQVILVLSSEPTSFMDGYALIKLLA-LEYKVKEILVVTNMV 182
Query: 184 PNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAF 243
++ + + + L L ++P+ I +A + + P +AS+AF
Sbjct: 183 EDETEGRDLFRRFSDVSARFLGIKLHHLGSVPRDSHIREAVLRKRCCLDLFPRSRASEAF 242
Query: 244 EKLAREV 250
E+LA +
Sbjct: 243 ERLAHRL 249
>pir||B42465 regulatory protein cII - phage phi-R73
Length = 341
Score = 76.5 bits (185), Expect = 3e-13
Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 46/255 (18%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIG------MDVVNY 57
+IS+ N KGGV KTT N+G+ L+ LG KVL+VD DPQ NLT +G D +
Sbjct: 3 IISLFNHKGGVSKTTTTFNMGWMLANLGYKVLIVDADPQCNLTALALGYSTTDDFDEIYK 62
Query: 58 EDKNVGTLMTRESSVE---------DVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERR 108
+ N + V+ D L+ NL L+ + LS E +I
Sbjct: 63 NNPNCDIYSCIKPVVDGSLGKVIPSDPLVTTNPNLSLLCGSIYLSEIETQIGVALTTSAA 122
Query: 109 L---------------EKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSY 153
+ E A K ++DY++ID PS+G L SDY ++P +
Sbjct: 123 IPAIRNIPGSIGAFLRETARK---HEFDYVLIDMSPSVGALNECLLMCSDYFIVPTSPDF 179
Query: 154 FGVIGMQLMFNLMSMIREETN-------------EGLRLLGIVPNKFTKQTKVPQARLKE 200
F ++ + ++ E N + + +G + K+ + +P +
Sbjct: 180 FCAQAIKSLAKVLPRWNSEINNFRDSGILYPFPIDPPKFIGFISQKYRPRNNLPVKSFQR 239
Query: 201 LKELYPDAPILTTIP 215
++ D T IP
Sbjct: 240 WIDIIKDEVTNTLIP 254
>gi|11498303 cell division inhibitor (minD-1) [Archaeoglobus fulgidus]
>gi|7443738|pir||H69336 cell division inhibitor (minD-1)
homolog - Archaeoglobus fulgidus
>gi|2649916|gb|AAB90541.1| (AE001056) cell division
inhibitor (minD-1) [Archaeoglobus fulgidus]
Length = 263
Score = 76.1 bits (184), Expect = 4e-13
Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 18/250 (7%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M I++A+ KGG GKTTI NLG +L++LG V +VD D ++GM+ + +
Sbjct: 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQ 60
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
NV + E+ +++ + + ++P+ ++L E + N E +LE L I
Sbjct: 61 NV---LAGEARIDEAIYVGPGGVKVVPAGVSL-----EGLRKANPE-KLEDVLTQIMEST 111
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
D +++D P + V ++ A+ +L+ + + L + I E G ++L
Sbjct: 112 DILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITD-----GLKTKIVAE-RLGTKVL 165
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
G+V N+ T T + E++ + +A ++ IP+ + +A A GK + PN A+
Sbjct: 166 GVVVNRIT--TLGIEMAKNEIEAIL-EAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAA 222
Query: 241 KAFEKLAREV 250
+A +LA +
Sbjct: 223 RAIVELANYI 232
>sp|Q57967|Y547_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0547 >gi|2144955|pir||C64368
cell division inhibitor MinD homolog MJ0547 -
Methanococcus jannaschii >gi|1591252|gb|AAB98539.1|
(U67504) cell division inhibitor minD [Methanococcus
jannaschii]
Length = 264
Score = 75.7 bits (183), Expect = 5e-13
Identities = 55/251 (21%), Positives = 128/251 (50%), Gaps = 18/251 (7%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M I+IA+ KGG GKTTI+ NL +L++ GKKV ++D D ++G++ +
Sbjct: 5 MAIAIAIASGKGGTGKTTISANLAVALAKFGKKVAVLDADIAMANLELIMGLE---GKPV 61
Query: 61 NVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDY 120
+ ++ ++ ++D + E E + +IP+ ++L + +LE+ LK I
Sbjct: 62 TLNDVLAGKADIKDAIYEGPEGVLVIPAGVSLEKFR------RAKPEKLEEVLKAIHDLV 115
Query: 121 DYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLL 180
+ +IID P +G + +++++D +++ + + + + + +I G ++
Sbjct: 116 EILIIDCPAGIGKETLIAISSADGLIVVVNPE------ISSISDALKIIAITKRLGTDII 169
Query: 181 GIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKAS 240
G + N+ + ++ + +K ++ + + P++ +P+ + KA A G + P+ A+
Sbjct: 170 GAIVNRVSNES--TELGVKAIETIL-EVPVIGVVPEDPHVRKAAAFGTPLVIMYPDSPAA 226
Query: 241 KAFEKLAREVI 251
+A ++A ++I
Sbjct: 227 QAIMEIAAKLI 237
>pir||F75175 cell division inhibitor (mind-1) PAB1983 - Pyrococcus abyssi
(strain Orsay) >gi|5457995|emb|CAB49485.1| (AJ248284)
cell division inhibitor (minD-1) [Pyrococcus abyssi]
Length = 260
Score = 75.3 bits (182), Expect = 7e-13
Identities = 59/252 (23%), Positives = 119/252 (46%), Gaps = 18/252 (7%)
Query: 2 GTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKN 61
G I A+ KGG GKTT N+G +L++ GK V+L+D D ++GM+ +
Sbjct: 3 GRSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDI---PVT 59
Query: 62 VGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYD 121
+ ++ E+ ++D + E + +IP L+L + R RL ++ I D
Sbjct: 60 LHDVLAGEADLKDAIYEGPAGVKVIPGGLSLEKIK------KARAERLRDLIREISQMGD 113
Query: 122 YIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLG 181
+I+ID P + + + +L ++I + +L + + E L L
Sbjct: 114 FILIDAPAGLELTSITALLIGKELIIVTNPEIAAITD-----SLKTKLVAEKLGTLPLGA 168
Query: 182 IVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASK 241
I+ +++T++ + ++ L E+ P+L T+P+ +++A A G + P A+
Sbjct: 169 ILNRVTSEKTELSREEIEALLEV----PVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAI 224
Query: 242 AFEKLAREVISI 253
A++++A ++ I
Sbjct: 225 AYKEIAAKLAGI 236
>gb|AAC62540.2| (AF052586) MotR [Pseudomonas aeruginosa]
Length = 275
Score = 74.9 bits (181), Expect = 9e-13
Identities = 65/265 (24%), Positives = 122/265 (45%), Gaps = 40/265 (15%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
VI++ KGGVGKT +++NL +L+ LG++V+L+D D L+G+ + +
Sbjct: 8 VIAVTGGKGGVGKTNVSVNLSLALADLGRRVMLLDADLGLANVDVLLGLS----PKRTLA 63
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYI 123
++ E + DV+++ + ++P+ S + + T + L +A I + D +
Sbjct: 64 DVIEGECDLRDVILQGPGGIRIVPA---ASGTQSMVHLTPMQHAGLIQAFSDISDNIDVL 120
Query: 124 IIDNPPSMGIFLVNSLTASD----------------YVLIPLELSYFGVIGMQLMFNLMS 167
++D +G +V+ + A+ Y LI L ++G+ +++ N+
Sbjct: 121 VVDTAAGIGDSVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRHYGMTRFRVLANMAH 180
Query: 168 MIREETNEGLRLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEG 227
+E N F K TKV R ++ Y A IP ++ KA +
Sbjct: 181 SPQEGR-----------NLFAKLTKVTD-RFLDVALQYVGA-----IPYDESVRKAVQKQ 223
Query: 228 KSIFEYEPNGKASKAFEKLAREVIS 252
+S++E P KAS AF +A++V S
Sbjct: 224 RSVYEAFPRSKASLAFRAVAQKVDS 248
>gi|10957476 chromosome partitioning ATPase, putative, ParA family [Deinococcus
radiodurans] >gi|7473444|pir||A75618 probable chromosome
partitioning ATPase, ParA family - Deinococcus
radiodurans (strain R1)
>gi|6460905|gb|AAF12609.1|AE001826_78 (AE001826)
chromosome partitioning ATPase, putative, ParA family
[Deinococcus radiodurans]
Length = 258
Score = 74.9 bits (181), Expect = 9e-13
Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 16/260 (6%)
Query: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
M T++++ GG GKT+IA N+ + ++ G+ VLL+D DPQ NLT + D +E
Sbjct: 1 MTTILTVFTHAGGAGKTSIAGNIAHEFAQRGQHVLLIDGDPQSNLTTNMGVQDAELHE-- 58
Query: 61 NVGTLMTRESSVEDVLIEVEENLH---LIPSHLTLSAKEIEIMNTYNRERRLEKALKPIF 117
TL S D + ++H LIP+ + L+ E I L AL+
Sbjct: 59 ---TLFDVLSG--DAPLPAPRHVHGFDLIPAVIDLAEVEPSIPGRVGGILALRDALQKES 113
Query: 118 PDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGL 177
+D +IID+PPS+G A+D +++P+ G+ ++ + +M L
Sbjct: 114 GRWDTVIIDSPPSLGQLAAACALAADALVVPIMTRSKGLNALRGLNRVMPQY-HRLRPDL 172
Query: 178 RLLGIVPNKFTKQTKVPQARLKELKELYPDAPILTT--IPKAIAIEKAQAEGKSIFEYEP 235
+ VP K L ++E D P +T+ + + A +G + + P
Sbjct: 173 HVAAYVPTMCKSNRKEDSELLGIVRE---DLPHVTSPIVERGAVWNGAAEKGLPVTVFAP 229
Query: 236 NGKASKAFEKLAREVISIVE 255
K ++ K+ +++ ++
Sbjct: 230 RSKEAEEIRKITSDLVEFLQ 249
>gb|AAC83387.1| (U60522) RepA [Paracoccus versutus]
Length = 321
Score = 73.4 bits (177), Expect = 3e-12
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 32/191 (16%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGM----------- 52
VIS+ N KGG GKTT + +L L+ G +VL +D+DPQ +L+ AL G+
Sbjct: 114 VISVVNFKGGSGKTTTSAHLAQRLAFKGYRVLAIDLDPQASLS-ALHGIQPELDLMEGGT 172
Query: 53 --DVVNYEDKNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRE---- 106
D V Y+D + + R++ + L LIP +L L E E R
Sbjct: 173 LYDAVRYDDPVPVSEVIRKTYI--------RGLDLIPGNLELMEFEHETPGAIQRGGARA 224
Query: 107 --RRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGM----Q 160
R+ AL + DYD +ID PP +G +++L+AS VL+ + ++ M +
Sbjct: 225 FFARVRDALDSVESDYDVAVIDCPPQLGFLTMSALSASSGVLVTVHPQMLDLMSMSQFLR 284
Query: 161 LMFNLMSMIRE 171
+ +L+ +IR+
Sbjct: 285 MTADLLGVIRD 295
>pir||S44165 hypothetical protein 7 - Chlamydia trachomatis
>gi|581018|emb|CAA55378.1| (X78726) ORF7 [Chlamydia
muridarum]
Length = 254
Score = 73.0 bits (176), Expect = 3e-12
Identities = 58/250 (23%), Positives = 122/250 (48%), Gaps = 12/250 (4%)
Query: 13 GVGKTTIALNLGYSLSR-LGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGTLMTRESS 71
G K LN+G +L++ LGK+VLL+D+DPQ NL+ L N+ K + +M +
Sbjct: 2 GQEKQHFPLNVGCNLAQFLGKRVLLIDLDPQSNLSSGLGASIEGNH--KGLHEVMCASND 59
Query: 72 VEDVLIEVEEN-LHLIP-SHLTLSAKEIEIMNTYNRERRL--EKALKPIFPDYDYIIIDN 127
++ ++ + ++ + +IP S L+ +E + RL ++ P+ YD I+D
Sbjct: 60 LKSIICKTKKTGVDIIPASFLSEQFREFSTNGIPSSNLRLFLDEYCSPL---YDVCIVDT 116
Query: 128 PPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGIVPNKF 187
PPS+G + A D +++ L F ++G+Q + + I + E +LG+ + +
Sbjct: 117 PPSLGGLTKEAFIAGDKLIVCLIPEPFSILGLQKIREFLISIGKPEEE--HILGVALSFW 174
Query: 188 TKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKASKAFEKLA 247
++ Q + ++ +Y + T I + I++ ++ + S+ P +A+ L
Sbjct: 175 DDRSSTNQTYIDIIESIYENKIFSTKIRRDISLSRSLLKEDSVINVYPTSRAATDILNLT 234
Query: 248 REVISIVEGQ 257
E+ +++ +
Sbjct: 235 HEISALLNSK 244
>sp|Q57853|Y410_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0410 >gi|2128304|pir||B64351
hypothetical protein MJ0410 - Methanococcus jannaschii
>gi|1591116|gb|AAB98399.1| (U67493) hypothetical protein
[Methanococcus jannaschii]
Length = 264
Score = 71.8 bits (173), Expect = 7e-12
Identities = 68/254 (26%), Positives = 116/254 (44%), Gaps = 33/254 (12%)
Query: 5 ISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVGT 64
I N +GG GKTT+A N Y LS+ K +L+D D T L G++ ++ N+ T
Sbjct: 3 IGFYNIQGGTGKTTVAANFAYILSQ-SVKTILIDCDIYGGTTAVLFGLE---DKEHNLNT 58
Query: 65 LMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYII 124
+ +S++ED++ ++ L H +S+K + N R E +K + +YD II
Sbjct: 59 YLAGDSAIEDIIYHYDD---LAIIHTDVSSKVFGYKSDLN---RFETLVKELEEEYDVII 112
Query: 125 IDNPPSMG-----IFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
D PP++ I V + V++ E S ++ N + I T+ G+ L
Sbjct: 113 YDFPPNITEDNPLIGYVGEFELVNKVVVVGEDSIPSIV------NSLKTIELITDLGIGL 166
Query: 180 LGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGKA 239
GI+ NK+ L ++ E+ D ++ +P +E+ E I + + K
Sbjct: 167 TGIIVNKY--------RGLTDISEIIDD--VIGVLPYDQNVERQWVESTPIVKIKT--KF 214
Query: 240 SKAFEKLAREVISI 253
+K LA E+ SI
Sbjct: 215 TKEMTALANEIASI 228
>gi|10956858 RepA replication protein [Sphingomonas aromaticivorans]
>gi|11278140|pir||T31150 replication protein A homolog -
Sphingomonas aromaticivorans plasmid pNL1
>gi|3378291|gb|AAD03874.1| (AF079317) RepA replication
protein [Sphingomonas aromaticivorans]
Length = 420
Score = 71.8 bits (173), Expect = 7e-12
Identities = 66/274 (24%), Positives = 128/274 (46%), Gaps = 30/274 (10%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFAL-IGMDVVNYEDKNV 62
VIS++N KGGVGK+T+AL+L + G +VL +D D Q + T DV ED +
Sbjct: 134 VISVSNFKGGVGKSTVALHLAQHFAIHGYRVLFIDCDSQASSTMMFGYRPDVDLTEDDTL 193
Query: 63 -GTLMTRE-SSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLE------KAL 113
G E V ++ + L LIP++L L E EI + + + +A+
Sbjct: 194 YGHFHNPELLGVRSIIRKTHFFGLDLIPANLKLYNLEYEIAGYLAQNQNFDIIDLIAEAI 253
Query: 114 KPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREET 173
+ DYD +++D PP++G+ + L A++ ++IP+ S VI + + M R
Sbjct: 254 DTVVDDYDVVVMDPPPALGMVSMAVLQAANAMVIPVPPS---VIDFASTVSFIDMARTTM 310
Query: 174 NEGLRLLG----------IVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKAIAIEKA 223
+ ++ G +V ++ + + + L +++++ + + + + I+ A
Sbjct: 311 KQLEQIAGRVKPAYNFIRLVGSRVDESKSMHREILSMMRQVFGGSMATSVLKTSAEIDNA 370
Query: 224 QAEGKSIFE-------YEPNGKASKAFEKLAREV 250
+ K++FE +E + + K + RE+
Sbjct: 371 SSRMKTVFELDRPVTSHEVHNRCMKHLSDVCREI 404
>sp|P55393|Y4CK_RHISN PUTATIVE REPLICATION PROTEIN A >gi|2182336|gb|AAB92426.1|
(AE000068) Y4cK [Rhizobium sp. NGR234]
Length = 407
Score = 71.0 bits (171), Expect = 1e-11
Identities = 65/268 (24%), Positives = 124/268 (46%), Gaps = 35/268 (13%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGM----------- 52
VI++ N KGG GKTT A +L ++ G +VL VD+DPQ +L+ +L G
Sbjct: 123 VIAVVNFKGGSGKTTTAAHLAQYMALTGHRVLAVDLDPQASLS-SLHGFQPELDMSPSLY 181
Query: 53 DVVNYEDKNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRE------ 106
+ + Y+D+ R S E + L ++P++L L E + + +
Sbjct: 182 EALRYDDQ-------RRSISEIIQPTNFPGLDIVPANLELQEYEYDTPLAMSNKSSNDGK 234
Query: 107 ---RRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGM-QLM 162
R+ +AL + YD ++ID PP +G + +LTA+ VLI + V+ M Q +
Sbjct: 235 TFFTRISRALSEVNDRYDVVVIDCPPQLGYLTITALTAATSVLITIHPQMLDVMSMGQFL 294
Query: 163 FNLMSMIREETNEG----LRLLGIVPNKFTKQTKVPQARLKE-LKELYPDAPILTTIPKA 217
L +++ + G L + ++ + T PQA++ ++ L+ + + K+
Sbjct: 295 LMLGGILKPIRDVGAAVNLEWYRYLITRY-EPTDGPQAQMVGFMQTLFHQFVLKNQMLKS 353
Query: 218 IAIEKAQAEGKSIFEYEPNGKASKAFEK 245
A+ A ++++E + + +E+
Sbjct: 354 TAVSDAGITKQTLYEVDKSQMTRSTYER 381
>pir||B70422 hypothetical protein aq_1404 - Aquifex aeolicus
>gi|2983808|gb|AAC07365.1| (AE000738) putative protein
[Aquifex aeolicus]
Length = 244
Score = 69.9 bits (168), Expect = 3e-11
Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 26/260 (10%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
+I + + KGGVGKTTIA NL Y+LS+ K V L+D DPQ + L D +
Sbjct: 2 IIPVLSSKGGVGKTTIATNLAYTLSKKAKTV-LIDTDPQNGVASVL-----CKRHDIGLA 55
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALK-PIFPDYDY 122
++ ++ + L +V EN +IP+ E ++ E LK +++
Sbjct: 56 DILLEGTNYGETLRQVRENFFIIPTGAKAIENEFSFNESFKYENIQNLCLKLESEGGFEF 115
Query: 123 IIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRLLGI 182
I+ D PP + + +D +L E ++ M +E E L L+
Sbjct: 116 ILFDTPPGYTVQSNVLMKLADVILAVFEAEPASYASFKVFETHMFTKEKEIREKLWLI-- 173
Query: 183 VPNKFTKQTKVPQARLKELKELY-------PDAPILTTIPKAIAIEKAQAEGKSIFEYEP 235
+ + R E+ E + IL +P A+ A E + EY+P
Sbjct: 174 ----------INKVRASEISEDFSFIFRYEAGGNILAYLPYDEAVSVASGECLLVEEYKP 223
Query: 236 NGKASKAFEKLAREVISIVE 255
+ K +L +++++++
Sbjct: 224 DSPFVKLMYELVEKLLTLLK 243
>gb|AAF87250.1|AF283811_1 (AF283811) putative replication protein A [Agrobacterium
tumefaciens]
Length = 382
Score = 69.9 bits (168), Expect = 3e-11
Identities = 58/219 (26%), Positives = 103/219 (46%), Gaps = 37/219 (16%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMD---------- 53
V++IAN KGG KTT ++L + L+ G +VL +D DPQ +L+ AL G
Sbjct: 152 VVAIANFKGGSAKTTTCVHLAHYLALQGYRVLALDHDPQASLS-ALFGAQPEFDVGANET 210
Query: 54 ---VVNYEDKNVGTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRE--- 106
+ Y+D + D++ + + + LIP +L + E E ++
Sbjct: 211 IYAALRYDD-------AERRPIRDIIRKTYFDGIDLIPGNLEVMEYEHETPRVLAQKSGS 263
Query: 107 -----RRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQ- 160
RL+ AL + DYD +I+D PPS+G ++++ A+ ++I + + V M
Sbjct: 264 GAIFFERLKLALSEVEQDYDIVILDTPPSLGFLTLSAIYAATSMIITVHPAMLDVASMSQ 323
Query: 161 ---LMFNLMSMIRE---ETNEGLRLLGIVPNKFTKQTKV 193
+M +L+S++ E + G L P + ++T V
Sbjct: 324 FLLMMGDLISVLNESGAQLGSGFHPLSCHPPRSERRTAV 362
>gb|AAK40399.1| SOJ protein (soj) [Sulfolobus solfataricus]
Length = 220
Score = 69.5 bits (167), Expect = 4e-11
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 19/146 (13%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDKNVG 63
++++ NQKGGVGKTT ++NL Y LS+ KK L+D+DP+ T + GM + +
Sbjct: 2 IVTVINQKGGVGKTTTSVNLSYYLSK-EKKTGLLDLDPEGGATIS-YGM------KRELK 53
Query: 64 TLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPDYDYI 123
L E SV +EV P+H+ L E+ + +K I +D++
Sbjct: 54 ELPLGEKSVNIFNVEV------FPAHIGLLKLELN-----GDVEEISNKIKEIGKQFDFL 102
Query: 124 IIDNPPSMGIFLVNSLTASDYVLIPL 149
+ID PP++G ++++ +D ++ P+
Sbjct: 103 VIDTPPNLGTLAISAMLVADRIVSPV 128
>gi|10955106 repA [Agrobacterium tumefaciens] >gi|95114|pir||A32812 repA protein
- Agrobacterium tumefaciens plasmid pTiB6S3
>gi|154804|gb|AAA27402.1| (M24529) repA protein (GTG
start codon) [Plasmid pTiB6S3]
>gi|8572703|gb|AAF77149.1| (AF242881) repA
[Agrobacterium tumefaciens]
Length = 405
Score = 69.5 bits (167), Expect = 4e-11
Identities = 63/256 (24%), Positives = 118/256 (45%), Gaps = 36/256 (14%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGM----DV----- 54
VI++ N KGG GKTT + +L L+ G +VL VD+DPQ +L+ AL+G+ DV
Sbjct: 123 VIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLS-ALLGVLPETDVGANET 181
Query: 55 ----VNYEDKNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRE---- 106
+ Y+D TR + + + LHL+P +L L E +
Sbjct: 182 LYAAIRYDD-------TRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDRGGRD 234
Query: 107 ----RRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQ-- 160
R+ +A + DYD ++ID PP +G ++ L A+ +++ + + M
Sbjct: 235 GLFFTRVAQAFDEVGDDYDVVVIDCPPQLGFLTLSGLCAATAMVVTVHPQMLDIASMSQF 294
Query: 161 --LMFNLMSMIREE-TNEGLRLLGIVPNKFTKQTKVPQARLKE-LKELYPDAPILTTIPK 216
+ +L+ ++RE N + + ++ Q PQ ++ L+ ++ D + + K
Sbjct: 295 LLMTRDLLGVVREAGGNLQYDFIRYLLTRYEPQ-DAPQTKVAALLRNMFEDHVLTNPMVK 353
Query: 217 AIAIEKAQAEGKSIFE 232
+ A+ A ++++E
Sbjct: 354 SAAVSDAGLTKQTLYE 369
>pir||S60670 ParA-like partition protein - Alcaligenes eutrophus plasmid MOL28
>gi|2120960|pir||S61914 ParA-like partition protein -
Alcaligenes eutrophus plasmid MOL28
>gi|950019|emb|CAA62234.1| (X90708) ParA-like partition
protein [Ralstonia sp. CH34]
Length = 306
Score = 69.1 bits (166), Expect = 5e-11
Identities = 70/281 (24%), Positives = 130/281 (45%), Gaps = 30/281 (10%)
Query: 2 GTVISIANQKGGVGKTTIALNLGYSLS-RLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
G VI++AN KGGV KTT++ L LS R G+KV VD+DPQ + T L G++ + E
Sbjct: 17 GKVIAVANFKGGVTKTTMSTLLCQGLSLRRGRKVCHVDLDPQGSAT-TLYGINP-HAEVS 74
Query: 61 NVGTLMTR-ESSVEDVLIEVE--------ENLHLIPSHLTLSAKEIEIMNTYNRE----- 106
+ T+M E+ + ++ NL LIPS L E + E
Sbjct: 75 SENTIMPLIEAYLAGESFDMRGLPQETYWPNLDLIPSSTELFNAEFMLPARATAEEGHIP 134
Query: 107 --RRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPL---ELSYFGVIGMQL 161
R L L + +YDYII+D P++ +N++ A+D V++P+ L++ ++
Sbjct: 135 FERVLSNGLDSLKDEYDYIILDTAPTLSYLTINAIFAADGVIVPVVPDTLAFASMVQFWQ 194
Query: 162 MFNLMSMIREETNEGLR----LLGIVPNKFTKQTKVPQARLKELKELYPDAPILTTIPKA 217
+F+ + EE + G + L ++ + K+ P+ ++ +Y + IP+
Sbjct: 195 LFSDLVTGMEEQSRGSKKEFDFLDVLMTRMEKK-NAPRLVADWIRGVYGSRVLPIEIPET 253
Query: 218 IAIEKAQAEGKSIFEY---EPNGKASKAFEKLAREVISIVE 255
+ + +++++ E N + + + E + V+
Sbjct: 254 DLARNSSIQFRTVYDLSSSEANTETMRRIRQPCDEFVDYVD 294
>emb|CAA61616.1| (X89447) repA protein [Rhizobium leguminosarum]
Length = 398
Score = 69.1 bits (166), Expect = 5e-11
Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 14/169 (8%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIG----MDVVNYED 59
VI+ N KGG GKTT A +L L+ G +VL +D+DPQ +++ AL G DV + E
Sbjct: 117 VITAVNFKGGSGKTTTAAHLAQYLALNGYRVLAIDLDPQASMS-ALHGFQPEFDVGDNET 175
Query: 60 KNVGTLMTRE-SSVEDVLIEVE-ENLHLIPSHLTLSAKE---IEIMNTYNRER----RLE 110
E ++D++ + NL L+P +L L E +++ + +R+ R++
Sbjct: 176 LYGAVRYDEERRPLKDIIKKTYFANLDLVPGNLELMEFEHDTAKVLGSNDRKNIFFTRMD 235
Query: 111 KALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGM 159
A+ + DYD +++D PP +G +++L A+ VL+ + V+ M
Sbjct: 236 DAIASVADDYDVVVVDCPPQLGFLTISALCAATAVLVTVHPQMLDVMSM 284
>gi|10954839 Probable repA gene [Agrobacterium tumefaciens]
>gi|2982700|dbj|BAA25270.1| (AB006857) repA
[Agrobacterium tumefaciens]
>gi|6002494|gb|AAF00012.1|AF060155_1 (AF060155) RepA
[Agrobacterium tumefaciens] >gi|6498192|dbj|BAA87644.1|
(AB016260) Probable repA gene [Agrobacterium
tumefaciens]
Length = 405
Score = 68.7 bits (165), Expect = 6e-11
Identities = 62/256 (24%), Positives = 118/256 (45%), Gaps = 36/256 (14%)
Query: 4 VISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGM----DV----- 54
V+++ N KGG GKTT + +L L+ G +VL VD+DPQ +L+ AL+G+ DV
Sbjct: 123 VVAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLS-ALLGVLPETDVGANET 181
Query: 55 ----VNYEDKNVGTLMTRESSVEDVLIEVEENLHLIPSHLTLSAKEIEIMNTYNRE---- 106
+ Y+D TR + + + LHL+P +L L E +
Sbjct: 182 LYAAIRYDD-------TRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALTDKGTRD 234
Query: 107 ----RRLEKALKPIFPDYDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQ-- 160
R+ +A + DYD ++ID PP +G ++ L A+ ++I + + M
Sbjct: 235 GLFFTRVAQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQF 294
Query: 161 --LMFNLMSMIREE-TNEGLRLLGIVPNKFTKQTKVPQARLKE-LKELYPDAPILTTIPK 216
+ +L+ +++E N + + ++ Q PQ ++ L+ ++ D + + K
Sbjct: 295 LLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ-DAPQTKVTALLRNMFEDHVLTNPMVK 353
Query: 217 AIAIEKAQAEGKSIFE 232
+ A+ A ++++E
Sbjct: 354 SAAVSDAGLTKQTLYE 369
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.137 0.373
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87727168
Number of Sequences: 2977
Number of extensions: 3554038
Number of successful extensions: 12608
Number of sequences better than 1.0e-10: 131
Number of HSP's better than 0.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 12379
Number of HSP's gapped (non-prelim): 136
length of query: 257
length of database: 189,106,746
effective HSP length: 59
effective length of query: 198
effective length of database: 153,796,013
effective search space: 30451610574
effective search space used: 30451610574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)