BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0853 (PAB0853) DE:Hypothetical protein
         (110 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75038 hypothetical protein PAB0853 - Pyrococcus abyssi (st...   218  1e-56

>pir||C75038 hypothetical protein PAB0853 - Pyrococcus abyssi (strain Orsay)
           >gi|5458713|emb|CAB50200.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 110
           
 Score =  218 bits (550), Expect = 1e-56
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MSKDNKKIPKLFSGSIKDLTKPKTQEEAKKNLKSEKKQKTLYISLDTNRKLIELYGEEGR 60
           MSKDNKKIPKLFSGSIKDLTKPKTQEEAKKNLKSEKKQKTLYISLDTNRKLIELYGEEGR
Sbjct: 1   MSKDNKKIPKLFSGSIKDLTKPKTQEEAKKNLKSEKKQKTLYISLDTNRKLIELYGEEGR 60

Query: 61  RQSNIVEDAVDLYYYLKKALGDRKFDELMEVIKRENVEEIREYLVKKFIL 110
           RQSNIVEDAVDLYYYLKKALGDRKFDELMEVIKRENVEEIREYLVKKFIL
Sbjct: 61  RQSNIVEDAVDLYYYLKKALGDRKFDELMEVIKRENVEEIREYLVKKFIL 110


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.312    0.134    0.348 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38202986
Number of Sequences: 2977
Number of extensions: 1455548
Number of successful extensions: 6314
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6313
Number of HSP's gapped (non-prelim): 1
length of query: 110
length of database: 189,106,746
effective HSP length: 59
effective length of query: 51
effective length of database: 153,796,013
effective search space: 7843596663
effective search space used: 7843596663
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 159 (66.3 bits)