BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0854 (PAB0854) DE:Hypothetical protein
(457 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (st... 901 0.0
pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii ... 866 0.0
pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alph... 402 e-111
pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (st... 395 e-109
pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii ... 392 e-108
pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii ... 388 e-107
pir||E75149 succinyl-coa synthetase alpha chain related protein ... 383 e-105
sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir... 383 e-105
pir||A75021 succinyl-coa synthetase alpha chain related protein ... 382 e-105
pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii ... 375 e-103
gi|11498810 conserved hypothetical protein [Archaeoglobus fulgid... 369 e-101
pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (st... 365 e-100
pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii ... 354 8e-97
gi|11499106 conserved hypothetical protein [Archaeoglobus fulgid... 353 2e-96
emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Therm... 339 5e-92
gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entam... 327 2e-88
gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfat... 323 3e-87
gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giard... 309 3e-83
gi|11498792 conserved hypothetical protein [Archaeoglobus fulgid... 301 1e-80
pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomy... 295 7e-79
gi|11499522 conserved hypothetical protein [Archaeoglobus fulgid... 279 5e-74
gi|11498537 conserved hypothetical protein [Archaeoglobus fulgid... 279 5e-74
pir||C82443 conserved hypothetical protein VCA0574 [imported] - ... 261 1e-68
dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in U... 234 2e-60
sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA IN... 234 2e-60
emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas ... 199 5e-50
pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomo... 197 2e-49
pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelic... 193 3e-48
gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacte... 189 6e-47
pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas... 159 6e-38
pir||A72707 probable succinyl-CoA synthetase alpha chain APE1072... 89 1e-16
gi|11499767 succinyl-CoA synthetase, alpha subunit (sucD-2) [Arc... 85 2e-15
sp|Q58643|SUCD_METJA SUCCINYL-COA SYNTHETASE ALPHA CHAIN (SCS-AL... 82 1e-14
gb|AAK42618.1| Succinyl-CoA synthetase, alpha subunit (sucD) [Su... 82 1e-14
gb|AAA27504.2| (M35832) succinyl-CoA synthetase alpha-subunit [T... 79 1e-13
gi|11499134 succinyl-CoA synthetase, alpha subunit (sucD-1) [Arc... 78 3e-13
pir||F81399 succinate--CoA ligase (ADP-forming) (EC 6.2.1.5) alp... 78 3e-13
emb|CAB92672.1| (AL356832) succinyl CoA synthetase alpha chain [... 75 2e-12
sp|P09143|SUCD_THEFL SUCCINYL-COA SYNTHETASE ALPHA CHAIN (SCS-AL... 75 2e-12
prf||1708208A succinyl CoA synthetase [Thermus aquaticus] 75 2e-12
prf||1414360A succinyl-CoA synthetase alpha [Thermus aquaticus] 73 5e-12
pir||F81180 conserved hypothetical protein NMB0593 [imported] - ... 72 1e-11
pir||D81924 hypothetical protein NMA0796 [imported] - Neisseria ... 70 4e-11
emb|CAC12452.1| (AL445067) probable succinyl-CoA synthetase, alp... 70 6e-11
>pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (strain Orsay)
>gi|5458714|emb|CAB50201.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 457
Score = 901 bits (2304), Expect = 0.0
Identities = 457/457 (100%), Positives = 457/457 (100%)
Query: 1 MLDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKD 60
MLDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKD
Sbjct: 1 MLDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKD 60
Query: 61 IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY
Sbjct: 61 IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
Query: 121 GMRIIGPNCVGIMNTHADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI 180
GMRIIGPNCVGIMNTHADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI
Sbjct: 121 GMRIIGPNCVGIMNTHADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI 180
Query: 181 SVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKS 240
SVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKS
Sbjct: 181 SVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKS 240
Query: 241 ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAIMT 300
ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAIMT
Sbjct: 241 ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAIMT 300
Query: 301 NAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA 360
NAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA
Sbjct: 301 NAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA 360
Query: 361 KLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEKAK 420
KLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEKAK
Sbjct: 361 KLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEKAK 420
Query: 421 ELLEKNGIPTYERPEDVASAAYALVEQAKNVGVLEVE 457
ELLEKNGIPTYERPEDVASAAYALVEQAKNVGVLEVE
Sbjct: 421 ELLEKNGIPTYERPEDVASAAYALVEQAKNVGVLEVE 457
>pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii
>gi|3257174|dbj|BAA29857.1| (AP000003) 457aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 457
Score = 866 bits (2213), Expect = 0.0
Identities = 433/457 (94%), Positives = 449/457 (97%)
Query: 1 MLDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKD 60
MLDYFFNPKGIAVIGASNDPKKLGYEVFKNLK+YK G VYPVN++EEEVQGVKAYKSVKD
Sbjct: 1 MLDYFFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKD 60
Query: 61 IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
IP E+DLAIIVVPK+FVKDTLIQCGEKGVKGVVIITAGFGETGEEGK+EEKELVEIAH+Y
Sbjct: 61 IPDEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKY 120
Query: 121 GMRIIGPNCVGIMNTHADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI 180
GMRIIGPNCVGIMNTH DLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI
Sbjct: 121 GMRIIGPNCVGIMNTHVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI 180
Query: 181 SVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKS 240
SVGNMAD+DFAELMEYLADTEEDKAIALYIEG+RNG+KF+EVAKRVTKKKP+IALKAGKS
Sbjct: 181 SVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIALKAGKS 240
Query: 241 ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAIMT 300
ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAF+QPLPRG +VAIMT
Sbjct: 241 ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFSQPLPRGNKVAIMT 300
Query: 301 NAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA 360
NAGGPGVLTADELDKRGLKLA LEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA
Sbjct: 301 NAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA 360
Query: 361 KLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEKAK 420
KLLLQDPNVDMLIAICVVPTFAGMT TEHAEGIIRA+KEVNN KPVLAMFMAGYVSEKAK
Sbjct: 361 KLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAK 420
Query: 421 ELLEKNGIPTYERPEDVASAAYALVEQAKNVGVLEVE 457
ELLEKNGIPTYERPEDVASAAYALVEQAKNVG+LEVE
Sbjct: 421 ELLEKNGIPTYERPEDVASAAYALVEQAKNVGILEVE 457
>pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alpha chain
[validated] - Pyrococcus furiosus
>gi|5419966|emb|CAB46516.1| (AJ240061) acetyl-CoA
synthetase [Pyrococcus furiosus]
Length = 462
Score = 402 bits (1022), Expect = e-111
Identities = 228/456 (50%), Positives = 300/456 (65%), Gaps = 12/456 (2%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVR--EEEVQG--VKAYK 56
L+ FNPK +AVIGAS P K+GY + KNL +Y G +YPVN++ E E+ G K YK
Sbjct: 3 LEALFNPKSVAVIGASAKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEIEINGRKFKVYK 62
Query: 57 SVKDIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEI 116
SV +IP EVD+A+IVVP KFV L +CG+KGVK V II++GFGE GEEGKK E++LVE
Sbjct: 63 SVLEIPDEVDMAVIVVPAKFVPQVLEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
Query: 117 AHRYGMRIIGPNCVGIMNTHADLNATF-ITVAKKGNVAFISQSGALGAGIVYKTIKEDIG 175
A +YGMRI+GPN G++ T A LNATF T G +A ISQSGALG ++ TI E IG
Sbjct: 123 ARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
Query: 176 FSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIAL 235
S +SVGN AD+D A+L+E+ D E +AI +Y+EG+++GR+F+EVAK V+KKKP+I +
Sbjct: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
Query: 236 KAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQ-PLPRGK 294
KAG+SE GA+AA+SHTGSLAGS K+Y AAFKQSGVL A TI E ARA + P P+G
Sbjct: 243 KAGRSERGAKAAASHTGSLAGSDKVYSAAFKQSGVLRAYTIGEAFDWARALSNLPEPQGD 302
Query: 295 RVAIMTNAGGPGVLTADELDKRGLKL-ANLEEKTIEELRSFLPPMAAVKNPVDMIASARG 353
V I+TN GG GV+ D ++ GL L NLEE I + +PP + KNPVD+ A G
Sbjct: 303 NVVIITNGGGIGVMATDAAEEEGLHLYDNLEELKI--FANHMPPFGSYKNPVDLTGMADG 360
Query: 354 EDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAG 413
+ Y + L P + IA+ T A + P E AE +IR E KP++ + G
Sbjct: 361 KSYEGAIRDALAHPEMHS-IAVLYCQT-AVLDPRELAEIVIREYNESGRKKPLVVAIVGG 418
Query: 414 YVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAK 449
+++A ++L +NGIP Y PE A AL + +K
Sbjct: 419 IEAKEAIDMLNENGIPAYPEPERAIKALSALYKWSK 454
>pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (strain Orsay)
>gi|5458076|emb|CAB49565.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 460
Score = 395 bits (1005), Expect = e-109
Identities = 222/458 (48%), Positives = 297/458 (64%), Gaps = 16/458 (3%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVR--EEEVQG--VKAYK 56
L+ FNPK IAVIGAS+ P K+GY + KNL +Y G +YPVN++ E E+ G K YK
Sbjct: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
Query: 57 SVKDIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEI 116
S+ ++P EVD+AIIVVP KFV + +CG+KGVK V II++GFGE GEEGKK E++LVE
Sbjct: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
Query: 117 AHRYGMRIIGPNCVGIMNTHADLNATF-ITVAKKGNVAFISQSGALGAGIVYKTIKEDIG 175
A +YGMRI+GPN G++ T A LN TF T G +A ISQSGALG ++ TI E IG
Sbjct: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
Query: 176 FSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIAL 235
S +SVGN AD+D A+L+E+ D E +AI +Y+EG+++GR+F+EVAK V+KKKP+I +
Sbjct: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
Query: 236 KAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQ-PLPRGK 294
KAG+SE GA+AA+SHTGSLAGS IY AAFKQSGVL A TI E ARA + P P+G
Sbjct: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
Query: 295 RVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSF---LPPMAAVKNPVDMIASA 351
V I+TN GG GV+ D ++ GLKL + +E+L+ F +PP + KNPVD+ A
Sbjct: 303 NVVIITNGGGIGVMATDAAEEEGLKLYD----DLEQLKIFANHMPPFGSYKNPVDLTGMA 358
Query: 352 RGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFM 411
+ Y + L P + +I + A + P + AE IIR E KP++ +
Sbjct: 359 DAKSYEGAIRDALNHPEMHSIIVLYC--QTAVLDPRDLAEIIIREYNESGRKKPLVVAIV 416
Query: 412 AGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAK 449
G +++A + L +NGIP Y PE A AL +K
Sbjct: 417 GGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSK 454
>pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii
>gi|3257942|dbj|BAA30625.1| (AP000006) 460aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 460
Score = 392 bits (997), Expect = e-108
Identities = 221/458 (48%), Positives = 299/458 (65%), Gaps = 16/458 (3%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVR--EEEVQG--VKAYK 56
L+ FNPK IAVIGAS+ P K+GY + KNL +Y G +YPVN++ E E+ G K YK
Sbjct: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
Query: 57 SVKDIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEI 116
S+ ++P EVD+A+IVVP K V + + +CG+KGVK II++GFGE GEEGKK E++LVE
Sbjct: 63 SILEVPDEVDMAVIVVPAKSVPEVVEECGKKGVKVAPIISSGFGELGEEGKKVEQQLVET 122
Query: 117 AHRYGMRIIGPNCVGIMNTHADLNATF-ITVAKKGNVAFISQSGALGAGIVYKTIKEDIG 175
A +YGMRI+GPN G++ T A LNATF T G +A ISQSGALG ++ TI E IG
Sbjct: 123 ARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
Query: 176 FSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIAL 235
S +SVGN AD+D A+L+E+ D E KAI +Y+EG+++GR+F+EVAK V+KKKP+I +
Sbjct: 183 LSAVVSVGNKADIDDADLLEFFKDDENTKAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
Query: 236 KAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQ-PLPRGK 294
KAG+SE GA+AA+SHTGSLAGS IY AAFKQ+GVL A TI E ARA + P P+G+
Sbjct: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQTGVLRALTIGEAFDWARALSNLPEPQGE 302
Query: 295 RVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSF---LPPMAAVKNPVDMIASA 351
V I+TN GG GV+ D ++ GL L + +E+L+ F +PP + KNPVD+ A
Sbjct: 303 NVVIITNGGGIGVMATDAAEEEGLHLYD----DLEQLKIFANHMPPFGSYKNPVDLTGMA 358
Query: 352 RGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFM 411
+ Y + L P DM I + A + P E A+ IIR E KP++ +
Sbjct: 359 DAKSYEGAIRDALAHP--DMHSIIVLYCQTAVLDPRELADVIIREYNESGRKKPLVVAIV 416
Query: 412 AGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAK 449
G +++A ++L +NGIP Y PE A AL + +K
Sbjct: 417 GGIEAKQAIDVLNENGIPAYPEPERAVKALSALYKWSK 454
>pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii
>gi|3258225|dbj|BAA30908.1| (AP000007) 472aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 472
Score = 388 bits (985), Expect = e-107
Identities = 203/460 (44%), Positives = 287/460 (62%), Gaps = 18/460 (3%)
Query: 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKQYKG-----GNVYPVNVREEEVQGVKAYKSVK 59
FF PK +A+IGA+N K+G +F+N K+ K GN+YPVN + +E++G K Y V
Sbjct: 13 FFEPKAVAIIGATNKKGKVGNVIFENFKKNKEKGIFKGNIYPVNPKLDEIEGYKVYHDVS 72
Query: 60 DIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHR 119
++P + DLA+I +P V +T+ + GEKG+K V+IIT GFGE GEEGK+ E+E++EIA
Sbjct: 73 ELPDDTDLAVIAIPAPAVPETMRKIGEKGIKSVIIITGGFGELGEEGKRMEQEILEIARA 132
Query: 120 YGMRIIGPNCVGIMNTHADLNATFITVAK-----KGNVAFISQSGALGAGIVYKTIKEDI 174
G+R+IGPNCVG+ ++ F+ K G +AFISQSGA A ++ I
Sbjct: 133 NGIRVIGPNCVGVYVPDTGVDTVFLPDEKMDRPPSGPIAFISQSGAFAAAMLDWAAMAGI 192
Query: 175 GFSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIA 234
G K +S GN D+D A+LMEY A +E K + YIEG+++GRKF+E AKRVTK KP+IA
Sbjct: 193 GIGKMVSYGNKIDVDDADLMEYFAHDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPIIA 252
Query: 235 LKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQ-PLPRG 293
LK+G++E GA+AASSHTGSLAG IY+A FKQ+G++ A + M +A+AF + LP+G
Sbjct: 253 LKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLPKG 312
Query: 294 KRVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARG 353
R+ I+T+ GG GV+ +D + K GLKLA L E+TI+ LR PP A V NP D++
Sbjct: 313 DRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLRERFPPHAVVGNPTDVVGDTDA 372
Query: 354 EDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEV--NNGKPVLAMFM 411
E Y + +DPNVD ++ I + P E +I I + + KP++ + M
Sbjct: 373 ERYRLALEAFTKDPNVDAILLIVLF-----QVPLLDEEEVINIITDYAKKSDKPIVVVSM 427
Query: 412 AGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAKNV 451
GY ++K +LE+ GIP Y PE A LV AK +
Sbjct: 428 GGYKTDKYARMLEERGIPVYPTPERGVRALAGLVRYAKYI 467
>pir||E75149 succinyl-coa synthetase alpha chain related protein PAB2112 -
Pyrococcus abyssi (strain Orsay)
>gi|5457786|emb|CAB49276.1| (AJ248284) SUCCINYL-COA
SYNTHETASE ALPHA CHAIN related protein [Pyrococcus
abyssi]
Length = 472
Score = 383 bits (973), Expect = e-105
Identities = 200/460 (43%), Positives = 287/460 (61%), Gaps = 18/460 (3%)
Query: 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKQYKG-----GNVYPVNVREEEVQGVKAYKSVK 59
FF P+ +A+IGA+N K+G +F+N K+ K GN+YPVN + +E+ G K Y V
Sbjct: 13 FFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYHDVS 72
Query: 60 DIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHR 119
++P + DLA+I +P V +T+ + EKG+K V+IIT GFGE GEEGK+ E+E++EIA
Sbjct: 73 ELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEIARA 132
Query: 120 YGMRIIGPNCVGIMNTHADLNATFITVAK-----KGNVAFISQSGALGAGIVYKTIKEDI 174
G+R+IGPNCVG+ ++ F+ K G +AFISQSGA A ++ I
Sbjct: 133 NGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAMAGI 192
Query: 175 GFSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIA 234
G K +S GN D+D A+LMEY A +E K + YIEG+++GRKF+E AKRVTK KP+IA
Sbjct: 193 GIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPIIA 252
Query: 235 LKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQ-PLPRG 293
LK+G++E GA+AASSHTGSLAG IY+A FKQ+G++ A + M +A+AF + LP+G
Sbjct: 253 LKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLPKG 312
Query: 294 KRVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARG 353
R+ I+T+ GG GV+ +D + K GLKLA L E+TI+ L+ PP A V NP D++
Sbjct: 313 DRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGDTDA 372
Query: 354 EDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEV--NNGKPVLAMFM 411
E Y + ++DPNVD ++ I + P + +I I + + KP++ + M
Sbjct: 373 ERYRLALEAFIKDPNVDAILLIVLF-----QVPLLDEKEVIDIITDYAKKSDKPIVVVSM 427
Query: 412 AGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAKNV 451
GY ++K ++LE+ GIP Y PE A LV AK V
Sbjct: 428 GGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYV 467
>sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir||F64373 hypothetical
protein homolog MJ0590 - Methanococcus jannaschii
>gi|1591298|gb|AAB98580.1| (U67507) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 704
Score = 383 bits (973), Expect = e-105
Identities = 212/445 (47%), Positives = 294/445 (65%), Gaps = 14/445 (3%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDI 61
L Y PK +A+IGAS K+GY + KNLK + G +YP+N + +E+ G+K YKSV D+
Sbjct: 8 LKYISYPKSVAIIGASKTEGKVGYAIMKNLKDFNG-KIYPINPKYDEIFGIKCYKSVLDV 66
Query: 62 PGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYG 121
++DLA+IVVP V L +CG+KGVKG VIITAGF E G + E ++ EIA RY
Sbjct: 67 EDDIDLAVIVVPNIVVPKVLEECGKKGVKGAVIITAGFSEVGNY--ELENKIKEIAKRYN 124
Query: 122 MRIIGPNCVGIMNTHADLNATFITV-AKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI 180
+RIIGPNC+GIMNTH +LNATF V KG V+ ISQSGA+ I+ +IGFSK +
Sbjct: 125 IRIIGPNCLGIMNTHINLNATFAKVFPPKGGVSIISQSGAVLNAILDIAPLLNIGFSKVV 184
Query: 181 SVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKS 240
S+GN AD+ ++L+EY D E+ K + LYIEG+++ ++F++VAK+++KKKP+IALK+G++
Sbjct: 185 SIGNKADIQESDLLEYFLDDEDTKIVVLYIEGLKD-KRFLKVAKKLSKKKPIIALKSGRT 243
Query: 241 ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAF-TQPLPRGKRVAIM 299
E G +AA SHTGSLAG IYEAAFK++G++ A T +E++ + F TQP + I+
Sbjct: 244 EVGKKAAKSHTGSLAGEDVIYEAAFKEAGIIRAYTFEELVDLIHLFSTQPTISSNEIGII 303
Query: 300 TNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRT 359
TNAGG GVL AD +KL+N E+ TIE+L++ LPP A + NP+D+I A E Y +
Sbjct: 304 TNAGGFGVLAADSCVDYNMKLSNFEKSTIEKLKNILPPTANISNPLDIIGDATPERYKKV 363
Query: 360 AKLLLQDPNVDMLIAICVVPTFAGMT-PTEHAEGII---RAIKEVNNGKPVLAMFMAGYV 415
++L +D NV L+ V+ T MT P E A+ II + KE N KP++ F+ G
Sbjct: 364 IEVLAEDSNVKGLL---VILTPQEMTKPLEVAKSIIEVKNSHKEFKN-KPLITSFVGGVS 419
Query: 416 SEKAKELLEKNGIPTYERPEDVASA 440
+ AK L KNGIP Y PE+ A
Sbjct: 420 VKGAKSYLRKNGIPAYITPENGVKA 444
>pir||A75021 succinyl-coa synthetase alpha chain related protein PAB1230 -
Pyrococcus abyssi (strain Orsay)
>gi|5459121|emb|CAB50607.1| (AJ248288) SUCCINYL-COA
SYNTHETASE ALPHA SUBUNIT RELATED PROTEIN [Pyrococcus
abyssi]
Length = 466
Score = 382 bits (970), Expect = e-105
Identities = 214/468 (45%), Positives = 296/468 (62%), Gaps = 22/468 (4%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVR--EEEVQG--VKAYKS 57
LD+ F P+ +AVIGAS+ P K+G + ++L G +Y VNV+ E EV G K Y+S
Sbjct: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYRS 65
Query: 58 VKDIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIA 117
VK+IP EVD+A+I VP KFV D + +CGEKGVKGVV+I+AGF E G +EE LV+ A
Sbjct: 66 VKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEE--LVKRA 123
Query: 118 HRYGMRIIGPNCVGIMNTHADLNATFITVAKK-----GNVAFISQSGALGAGIVYKTIKE 172
++G+R++GPNC+G+ N + F ++ G +AF+SQSGA GA I+ +
Sbjct: 124 RKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARH 183
Query: 173 DIGFSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPV 232
++G SKFIS+GNMADLD ++ M YL D + K I YIEG+++GRKF AK TK KPV
Sbjct: 184 EVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPV 243
Query: 233 IALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLP- 291
I LKAG++E+GA+AA+SHTGSLAGS+KIYEAAFKQSGVL+A ++ ++ + A+A P
Sbjct: 244 IILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPA 303
Query: 292 RGKRVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSF-----LPPMAAVKNPVD 346
+G RVAI+TN GG GV+ +D L + GLKLA E+T E+ R LP + +NPVD
Sbjct: 304 KGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVD 363
Query: 347 MIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPV 406
+I A Y + +L+DPNVD+++ V+ F E ++ +KE GKP+
Sbjct: 364 VIGDAPSSRYEVAIRYVLEDPNVDIVV---VIALFQSPALDEGIVDVMGRVKEY--GKPI 418
Query: 407 LAMFMAGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAKNVGVL 454
+ + G E +EK GIP +E ED A YALV K + L
Sbjct: 419 VFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKYLSEL 466
>pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii
>gi|3258372|dbj|BAA31055.1| (AP000007) 466aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 466
Score = 375 bits (952), Expect = e-103
Identities = 209/469 (44%), Positives = 296/469 (62%), Gaps = 24/469 (5%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVR--EEEVQG--VKAYKS 57
LD+ F P+ +AVIGAS+ P K+G + ++L G +Y VNV+ E EV G K YKS
Sbjct: 6 LDFLFYPESVAVIGASHVPGKVGNGILRSLVNNFRGKIYAVNVKGGEIEVNGKKFKVYKS 65
Query: 58 VKDIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIA 117
+KD+P +VD+A+I VP KFV + + +CGEKGVKGVV+I+AGF E G +EE LV+ A
Sbjct: 66 IKDVPDKVDVAVIAVPAKFVPEVIDECGEKGVKGVVVISAGFKEAGRADLEEE--LVKRA 123
Query: 118 HRYGMRIIGPNCVGIMNTHADLNATFITVAKK-----GNVAFISQSGALGAGIVYKTIKE 172
++G+R++GPNC+G+ N + F ++ G +AF+SQSGA GA I+ +
Sbjct: 124 KKWGIRVVGPNCLGVTNLENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARH 183
Query: 173 DIGFSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPV 232
++G SKFIS+GNMADLD ++ M YL + + K I YIEG+++G+KF VAK TK KPV
Sbjct: 184 EVGMSKFISLGNMADLDESDFMLYLKNDPKTKVITAYIEGVKDGKKFFNVAKETTKVKPV 243
Query: 233 IALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLP- 291
I LKAG++E+GA+AA+SHTGSLAGS++IYEA F+Q+G+L A ++ ++ + A+A P
Sbjct: 244 IVLKAGRTEAGAKAAASHTGSLAGSYRIYEAVFEQTGILAAKSMRQLFNYAKALAMQKPA 303
Query: 292 RGKRVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSF-----LPPMAAVKNPVD 346
G RVAI+TN GG GV+ +D L +RGLKLA L E+T ++ R LP + NPVD
Sbjct: 304 NGDRVAIVTNGGGAGVMMSDGLLERGLKLAELSEETKDKFRKAIEEGKLPEHMSYANPVD 363
Query: 347 MIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNN-GKP 405
+I A Y +L+DPNVD+L I + + A EGI+ + V GKP
Sbjct: 364 VIGDAPSSRYELAINYVLEDPNVDILAVIALFQSPA------LDEGIVDVMDRVKKYGKP 417
Query: 406 VLAMFMAGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAKNVGVL 454
++ + G EK +EK G+P +E ED A YALV+ K + L
Sbjct: 418 IVFIAPGGEFPEKIARRIEKVGVPVFETVEDGVDAVYALVKYGKYLSEL 466
>gi|11498810 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448044|pir||B69401 conserved hypothetical protein
AF1211 - Archaeoglobus fulgidus
>gi|2649370|gb|AAB90033.1| (AE001020) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 685
Score = 369 bits (937), Expect = e-101
Identities = 197/449 (43%), Positives = 290/449 (63%), Gaps = 13/449 (2%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDI 61
++ F PK +AVIGAS K+G + KNL+ + G VY VN + E+ G Y SV I
Sbjct: 1 MERLFYPKVVAVIGASPQEGKVGNTIMKNLRNFSG-TVYAVNPKYREILGFPCYPSVLKI 59
Query: 62 PGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYG 121
P VDLAIIVVP K V + +CG K V+G V+I+AGF E G EG K E+ELVE+A RYG
Sbjct: 60 PENVDLAIIVVPAKLVPKAVEECGRKDVEGAVVISAGFKEAGIEGAKLERELVEVAERYG 119
Query: 122 MRIIGPNCVGIMNTHADLNATFITVA-KKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI 180
++++GPNC+G++NT +NATF VA +KG +AF+SQSGA ++ + + +GFSK +
Sbjct: 120 VKLVGPNCLGMINTEIAMNATFSRVAPEKGRIAFLSQSGAFILAVLEWSKRNGVGFSKVV 179
Query: 181 SVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKS 240
S+GN A LD ++ +EYLA + I +Y+EG+ +GRKF+ VAK V ++KPV+ +KAGKS
Sbjct: 180 SLGNKAMLDESDFLEYLAKDDSTDVILIYMEGVEDGRKFMRVAKSVARRKPVVVMKAGKS 239
Query: 241 ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAIMT 300
+SGA+AASSHTGSLAGS++ Y AAF+QSGV+ A++++E+ A + G +AI+T
Sbjct: 240 QSGAKAASSHTGSLAGSYEAYRAAFRQSGVIEASSVEELFDFALLLLKYRKAG-NLAILT 298
Query: 301 NAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA 360
N+GGPGV+ AD D+ G+ LAN +TI +L+ FLP + NPVD++ A E + R+
Sbjct: 299 NSGGPGVMAADACDQFGVPLANFNFETIRKLKEFLPAESNFYNPVDILGDASAERFSRSL 358
Query: 361 KLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEKAK 420
++L +D NVD+++ I +TPT + ++A + V GK + FM G ++++
Sbjct: 359 QILSEDENVDIVLTI--------LTPTAQMD-FLKAAESV-VGKNAVCCFMGGESVDESE 408
Query: 421 ELLEKNGIPTYERPEDVASAAYALVEQAK 449
+L +GIP + P A L +K
Sbjct: 409 RILRSSGIPNFFDPVRAVRAISVLGRYSK 437
>pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (strain Orsay)
>gi|5458844|emb|CAB50331.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 442
Score = 365 bits (926), Expect = e-100
Identities = 202/454 (44%), Positives = 280/454 (61%), Gaps = 15/454 (3%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGV-KAYKSVK 59
+DYFF PK +A+ G+ + + E+ +N+ + G + PVN + V+ + ++ K
Sbjct: 1 MDYFFYPKSVAIFGSFREGA-IAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
Query: 60 DIPGEVDLAIIVVPKKFVKDTLIQCGEKGV-KGVVIITAGFGETGEEGKKEEKELVEIAH 118
+ EVD++I+V+P K V + + KG+ KG V+I+AGF E G +EE L++ A
Sbjct: 60 RLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEE--LIKAAK 115
Query: 119 RYGMRIIGPNCVGIMNTHADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSK 178
G+RIIGPNC GI H +F G +A ISQSGA G + +E++GFS
Sbjct: 116 EAGIRIIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSA 175
Query: 179 FISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAG 238
F+S GN ADLD ++ + Y AD E K IALYIEG+++GRKF E K T KKPVI LKAG
Sbjct: 176 FVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAG 235
Query: 239 KSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAI 298
KSESGA+AA SHTGSLAGS++IY+A FKQ + ++E+ A+AF G RVA+
Sbjct: 236 KSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSRVAV 295
Query: 299 MTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYR 358
+TN+GGPGVL D+L+K GL++A L E+T+ +LR FLPP + +NP+D+IA A E Y R
Sbjct: 296 ITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRR 355
Query: 359 TAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEK 418
T +++ QD NVD L+ ICV P F +E I RAI E KP++ FMAG + +K
Sbjct: 356 TIEVVCQDENVDSLLVICVPPIFI------PSEEIARAIIEAKCNKPIIVNFMAGELVKK 409
Query: 419 AKELLEKNGIPTYERPEDVASAAYALVEQAKNVG 452
ELL +GI + PE A A Y L + KN G
Sbjct: 410 GVELLNAHGIKNFPTPERAAKALYWL-SKRKNQG 442
>pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii
>gi|3257031|dbj|BAA29714.1| (AP000003) 440aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 440
Score = 354 bits (900), Expect = 8e-97
Identities = 198/447 (44%), Positives = 274/447 (61%), Gaps = 16/447 (3%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVR--EEEVQGVKAYKSV 58
+DYFF PK +A+ G+ + E+ +N+ + G + PVN + E EV G + +
Sbjct: 1 MDYFFYPKSVAIFGSFRKGS-IAREILRNIVEGGFEGKIIPVNPKGGEVEVSG-RRFIIK 58
Query: 59 KDIPGEVDLAIIVVPKKFVKDTLIQCGEKGV-KGVVIITAGFGETGEEGKKEEKELVEIA 117
+ + VD++IIV+P K V + + KG+ KG V+I+AGF E G + E+EL+ A
Sbjct: 59 RKLDEFVDVSIIVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNV--ELEEELIRAA 114
Query: 118 HRYGMRIIGPNCVGIMNTHADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFS 177
G+RIIGPNC GI H +F G +A ISQSGA G + +E++GFS
Sbjct: 115 KESGIRIIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFS 174
Query: 178 KFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKA 237
F+S GN ADLD ++ + Y AD E K IALYIEG+++GRKF E K T KKPVI LKA
Sbjct: 175 AFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKA 234
Query: 238 GKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVA 297
GKS+SGA+AA SHTGSLAGS++IY+AAFKQ+ + ++E+ A+AF G RVA
Sbjct: 235 GKSKSGAKAAQSHTGSLAGSYEIYQAAFKQANAIEVEEMEELFDAAKAFEMYKEAGSRVA 294
Query: 298 IMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYY 357
++TN+GGPGVL D+L+K GL++A L E T+++LR FLPP + KNP+D+IA A E Y
Sbjct: 295 VITNSGGPGVLATDKLEKLGLEIAQLSEDTVKKLREFLPPQCSTKNPIDLIADADYERYK 354
Query: 358 RTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSE 417
RT +++ QD NVD L+ ICV P F +E I RAI E KP++ FM+G +
Sbjct: 355 RTIEIVCQDENVDSLLVICVPPIFI------PSEEIARAIIEAKCDKPIIVNFMSGELVA 408
Query: 418 KAKELLEKNGIPTYERPEDVASAAYAL 444
+LL + I + PE A A Y L
Sbjct: 409 NGVKLLNDHDIKNFPTPERAAKALYWL 435
>gi|11499106 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483131|pir||F69438 conserved hypothetical protein
AF1511 - Archaeoglobus fulgidus
>gi|2649053|gb|AAB89736.1| (AE000998) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 881
Score = 353 bits (896), Expect = 2e-96
Identities = 196/457 (42%), Positives = 294/457 (63%), Gaps = 14/457 (3%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGVKAYKSVKD 60
L +FFNP+ +AVIGAS D +K+G F NL Y+ G YPVN + + GV+AY ++ +
Sbjct: 191 LKHFFNPESVAVIGASRDVEKVGGRTFYNLLTYRFNGVAYPVNRAAKAIMGVRAYPTISE 250
Query: 61 IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
+P EV+LA++ VP K+ + +CG+KGVK ++++TAGF E G EG + +K+LVEI +Y
Sbjct: 251 VPDEVELAVLSVPVKYALEVAEECGKKGVKALLVLTAGFAEVGGEGVERQKKLVEICRKY 310
Query: 121 GMRIIGPNCVGIMNTHAD--LNATFI-TVAKKGNVAFISQSGALGAGIVYKTIKEDIGFS 177
GMR+IGPNC+GI+NT + L ATF T +G++AF SQSGA+G ++ + +G S
Sbjct: 311 GMRLIGPNCMGIINTAPETRLLATFAPTPPNEGSIAFASQSGAVGLALMDRVNNYGLGLS 370
Query: 178 KFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKA 237
F+S+GN AD+ +L+E+ + K I LY E I N RKF +AKR++KKKP++A+ +
Sbjct: 371 YFVSLGNSADITSNDLIEFWEEDGRTKLIMLYQESIPNPRKFARLAKRISKKKPILAIAS 430
Query: 238 GKSESGARAASSHTGSLAGSWKI-YEAAFKQSGVLVANTIDEMLSMAR-AFTQPLPRGKR 295
G + +GA+A +SHTG++ S I +A FKQ+G++ A++IDE+ S++ QPLP+G R
Sbjct: 431 GVTPAGAKAVASHTGAIVSSSGIAIDALFKQTGIIRASSIDELFSISEFLLHQPLPKGNR 490
Query: 296 VAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGED 355
V I+TN GG G +T+D + GL++A L E+T E LR+ LP +A+VKNPVDM ASA
Sbjct: 491 VCIVTNGGGLGAITSDWCHQVGLEIAELSERTQESLRNLLPEIASVKNPVDMTASADVRM 550
Query: 356 YYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNN-GKPVLAMFMAGY 414
Y +T K + +D NVD +I I V + E + +I A K N+ GKPV+ + Y
Sbjct: 551 YGQTLKTVAEDENVDAIICI-FVAAVSEEKSEEVEKAVISAAKYANSVGKPVVYI----Y 605
Query: 415 VSEKAKE--LLEKNGIPTYERPEDVASAAYALVEQAK 449
+S +K+ + ++ +P Y P A +VE AK
Sbjct: 606 ISSDSKDGVIGDEVKVPVYVFPNTAAKVLGKVVEYAK 642
>emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Thermoplasma
acidophilum]
Length = 698
Score = 339 bits (859), Expect = 5e-92
Identities = 185/448 (41%), Positives = 277/448 (61%), Gaps = 13/448 (2%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQ--YKGGNVYPVNVREEEVQGVKAYKSVK 59
L F P+ +AVIGAS D K+GY++ +NLK+ Y+G VYPVN + + G Y S+
Sbjct: 8 LKSLFYPESVAVIGASADKTKIGYQIVRNLKEGGYQG-KVYPVNRKGGNILGYTVYPSIG 66
Query: 60 DIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHR 119
D+P +VDLAII VP + + +CG+KGV G++++ +GF E G K E +LVE+ +
Sbjct: 67 DVPDKVDLAIISVPAEHTPEAAEECGKKGVFGIIVVASGFSEVGR--KDLEDQLVEVCRK 124
Query: 120 YGMRIIGPNCVGIMNTHADLNATFIT-VAKKGNVAFISQSGALGAGIVYKTIKEDIGFSK 178
Y MR++GPN VG+MN LNA+F + G + +SQSGAL G+ T G S
Sbjct: 125 YNMRLLGPNVVGLMNNVLKLNASFAPYLPYPGTIGMVSQSGALIVGLDAMTWSNKTGTSF 184
Query: 179 FISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAG 238
IS+GNMADLDF++L+ +LA+ I+LY EG++ GR+FI+ A+ + KKP++ LK+G
Sbjct: 185 LISIGNMADLDFSDLVSFLAEDNNVSCISLYTEGLKAGRRFIDTARSI--KKPIVMLKSG 242
Query: 239 KSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFT-QPLPRGKRVA 297
S+ G+ AA+SHTGSLAGS ++Y+ A KQ+GV+ AN+I+E+ ++ + QP G +
Sbjct: 243 ISKHGSVAAASHTGSLAGSHRVYDGALKQAGVVRANSIEELFDLSLTLSLQPPMGGDNLM 302
Query: 298 IMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYY 357
++TN GG GVL D+ + G+ L + ++R +P + KNP+DM A A E Y
Sbjct: 303 VVTNGGGIGVLATDQAELSGIPLQTPSDDLQAKIRQVIPSFGSTKNPIDMSAMATPEIYA 362
Query: 358 RTAKLLLQDPNVDMLIAI-CVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVS 416
T K +++D +VD L+ + C V A + P++ A+GII + N PV+A F+ G S
Sbjct: 363 DTIKTVMEDDSVDGLVVLYCEV---ANLDPSDAAKGIINGVLSSNRKIPVVAGFVGGEHS 419
Query: 417 EKAKELLEKNGIPTYERPEDVASAAYAL 444
+ A L KNGIPT++ P+ A AL
Sbjct: 420 KNASLYLIKNGIPTFDSPDKAVKAMAAL 447
>gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entamoeba histolytica]
Length = 713
Score = 327 bits (829), Expect = 2e-88
Identities = 182/442 (41%), Positives = 268/442 (60%), Gaps = 17/442 (3%)
Query: 6 FNPKGIAVIGASNDPKKLGYEVFKNLKQ--YKGGNVYPVNVREEEVQGVKAYKSVKDIPG 63
FNPK + VIGAS+ + +GY V N+ + YKG N+YPV R+ E+ G K Y + I
Sbjct: 7 FNPKSVPVIGASDRKESVGYAVMNNMIKGGYKG-NLYPVG-RKPELFGKKCYAKIGKIEE 64
Query: 64 EVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMR 123
+VDLA+I +P KFV I+CGE GVKG++IITAGF E GEEGKK E+ +Y MR
Sbjct: 65 KVDLAVIAIPAKFVPGVCIECGEAGVKGLIIITAGFAEAGEEGKKMCIEIQATCQKYNMR 124
Query: 124 IIGPNCVGIMNTHADLNATFITVAKK-GNVAFISQSGALGAGIVYKTIKEDIGFSKFISV 182
+IGPNC+GI+N +NA+F +V + G VAFISQSGAL I+ + +GFS F+S+
Sbjct: 125 MIGPNCLGIINPRDGVNASFASVMPEAGGVAFISQSGALCTAILDWAANQHVGFSYFVSI 184
Query: 183 GNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKSES 242
G+ D D+A+L E+ A + +I +YIE I++ +KF+ A+ KP+I LKAGKS
Sbjct: 185 GSSIDTDYADLFEFFAKDPKVTSILMYIESIKDAKKFVLRAREFAADKPIILLKAGKSSE 244
Query: 243 GARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAF-TQPLPRGKRVAIMTN 301
GA AA SHTGSLAG+ +Y+A F + G + ++I ++ A TQ +P+ R+ I+TN
Sbjct: 245 GAAAAMSHTGSLAGNDAVYDAVFDRCGCIRVDSICDLWDCAHVLATQNIPQNNRLCIITN 304
Query: 302 AGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAK 361
AGGPGV++ D L LA L E T+ EL +FL P + NPVD++ A Y +T
Sbjct: 305 AGGPGVISTDRLVSVHGHLAKLSESTMNELNAFLSPFWSHSNPVDVLGDATAGVYQKTLD 364
Query: 362 LLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEKAK- 420
++++DP +D ++ + +TP + + A V +G G+V++K++
Sbjct: 365 IVIKDPQIDGVVVV--------LTPQAMTDPVAVAKSLVEHGPYQNQSLPHGWVNQKSEA 416
Query: 421 --ELLEKNGIPTYERPEDVASA 440
++LE+ IP +E PE +A
Sbjct: 417 GVKILEEGKIPNFETPERAVTA 438
>gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 660
Score = 323 bits (818), Expect = 3e-87
Identities = 177/440 (40%), Positives = 264/440 (59%), Gaps = 15/440 (3%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDI 61
L+Y F P+ IAV+GAS +K+G +F+NL G +YP+N + E+V+GVKAYKSVK+I
Sbjct: 4 LNYLFKPRSIAVVGASRHKEKVGNVIFRNLLSTFQGKLYPINTKAEDVEGVKAYKSVKEI 63
Query: 62 PGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYG 121
P ++DL +I VP++ V T+ + EKGVK ++ITAGF E GEE K E E++ IA + G
Sbjct: 64 PDDIDLGVIAVPREVVPQTMEEFVEKGVKASIVITAGFREVGEE--KLENEVISIARKGG 121
Query: 122 MRIIGPNCVGIMNTHADLNATFI-TVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI 180
+R++GPN GI+ + NATF T K+GNV + QSG LG ++ K IG S +
Sbjct: 122 IRVLGPNTFGIITP--EFNATFTYTDVKRGNVGLVVQSGGLGVYMLNWAQKYRIGISYMV 179
Query: 181 SVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKS 240
S+GN AD+ E++ YL+ E +AI +Y+EG+ +G F+E T++KPV+ LK G S
Sbjct: 180 SLGNQADVKEYEVINYLSKDAETRAIFVYLEGVSDGNAFLEELPEATRRKPVVFLKGGVS 239
Query: 241 ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAIMT 300
SGA AA +HTGSLAGS+++++AA G ++ + + +ML++A+ P + + ++T
Sbjct: 240 SSGASAAKTHTGSLAGSFEVFKAAVNTIGGILVDNLHDMLNLAKILMYSEPISEELLVIT 299
Query: 301 NAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA 360
N+GG GVL +DE+DK GL+L + E +EL LPP + KNP+D+ A E Y+
Sbjct: 300 NSGGHGVLVSDEIDKNGLRLVEIPEWMKKELTKILPPTSLPKNPLDLTGDADRERYHNAL 359
Query: 361 KLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEKAK 420
K++ ++D C P + R I GK V+ + M G + A
Sbjct: 360 KIV---SSLD-----CTKLVIVQSLPMVSCSDVARVISNF-KGKGVIGVTM-GLDEDMAL 409
Query: 421 ELLEKNGIPTYERPEDVASA 440
++LE GIP Y PED A
Sbjct: 410 KILETTGIPGYTFPEDAVKA 429
>gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giardia intestinalis]
Length = 726
Score = 309 bits (784), Expect = 3e-83
Identities = 176/451 (39%), Positives = 266/451 (58%), Gaps = 6/451 (1%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGVKAYKSVKD 60
L + NP +AVIGAS + K+G V N+K+ G VYP+N E+ G K YKSV D
Sbjct: 15 LSFLTNPASVAVIGASPNAGKVGNTVVTNIKESGYTGKVYPINPTATEILGYKTYKSVLD 74
Query: 61 IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
+P +D+ I+V+P K V +C +K VK +V+ITAGF E G EG + E++L +I
Sbjct: 75 VPDSIDVVIVVIPSKAVLAAAKECAQKKVKSLVVITAGFKEIGGEGVQMEQDLTKICKDA 134
Query: 121 GMRIIGPNCVGIMNTHADLNATFITVA-KKGNVAFISQSGALGAGIVYKTIKEDIGFSKF 179
G+R++GPNC+GI+ + LN TF + KG++AF+SQSGA+ I+ + IGFS F
Sbjct: 135 GIRLVGPNCLGIVTPN--LNCTFASAKPSKGSIAFLSQSGAMLTSILDWALTNGIGFSNF 192
Query: 180 ISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGK 239
IS+GN AD+D +L+ +A+ I LY+E I +GRKF+E KKPVI LK+G
Sbjct: 193 ISLGNKADVDEVDLIMEVAEDPNTDIILLYLESIVDGRKFLEQIPTCVHKKPVIILKSGT 252
Query: 240 SESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAF-TQPLPRGKRVAI 298
S +GA AASSHTG+LAG+ ++ AF+++GVL A T+ ++ + R F + LP+G I
Sbjct: 253 SAAGAAAASSHTGALAGNDIAFDLAFEKAGVLRAATMSDLFDLGRLFVSHRLPKGDNFVI 312
Query: 299 MTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYR 358
+TNAGGPG++T D + + +A L +KT E L LP A+VKNPVD++ A + Y
Sbjct: 313 VTNAGGPGIVTTDAFETYHVGMAALSDKTKEALAKVLPGEASVKNPVDIVGDAPPKRYED 372
Query: 359 TAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEK 418
++ ++P + A+ +V P E AE R + + + V++ FM G ++
Sbjct: 373 ALEICFKEPPETVAGAVILVTPQGQTKPCEVAELCTRMYAKYPD-RLVVSAFMGGLTMQE 431
Query: 419 AKELLEKNGIPTYERPEDVASAAYALVEQAK 449
++L +P + PE A A+++ K
Sbjct: 432 PSKILNNAKMPVFPFPEPAIHATGAVLKYRK 462
>gi|11498792 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483097|pir||G69398 conserved hypothetical protein
AF1192 - Archaeoglobus fulgidus
>gi|2649402|gb|AAB90053.1| (AE001022) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 664
Score = 301 bits (763), Expect = 1e-80
Identities = 175/457 (38%), Positives = 273/457 (59%), Gaps = 22/457 (4%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGVKAYKSVKD 60
+ +FF K +AVIGAS + K G V NLK G VYPVN E+ G K Y SV+
Sbjct: 218 ISFFFKAKSVAVIGASRNLLKPGGRVLSNLKHLGFRGKVYPVNPNAGEILGYKCYPSVRA 277
Query: 61 IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
IP +VDLA+I VP K + + +C EKGVKG+++++AGF E E+GK+ E+++VEIA +
Sbjct: 278 IPDKVDLAVIAVPSKNAIEVVKECAEKGVKGIIVLSAGFAEGWEQGKELERQIVEIARKS 337
Query: 121 GMRIIGPNCVGIMNTHADLNATFITVAK--KGNVAFISQSGALGAGIVYKTIKEDIGFSK 178
GMRI+GPN +GI++ + L + F + K +GN+ ++QSGA+ I+ +GFSK
Sbjct: 338 GMRIVGPNTMGILDPESGLTSFFSVLRKIGQGNIGVLAQSGAVANFILLPL--WHVGFSK 395
Query: 179 FISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAG 238
+++GN AD+ E++ +L E+ + +A Y+EG NGRKF E+ K T KP++ LK+G
Sbjct: 396 IVAIGNKADVGEVEVLNFLLKDEKTRVVAAYLEGFTNGRKFYELMKAST--KPIVVLKSG 453
Query: 239 KSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFT-QPLPRGKRVA 297
++E+G R+A SHT S++ S +I+EAA KQ+GV +E++ A+A QPLPRG RV
Sbjct: 454 RTEAGKRSALSHTASISTSEEIFEAACKQAGVAKVYDFEELVDAAKALALQPLPRGTRVG 513
Query: 298 IMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDM--IASARGED 355
++ +G V++AD + + GL+LA EKT+E L P ++ NP+D+ IA G++
Sbjct: 514 VIQPSGAECVMSADAVVENGLELAKYSEKTLERLYELAPEWHSINNPLDLYPIAEKSGDE 573
Query: 356 YY-RTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGY 414
+ K+ +D N+D ++A +P+ + G+ + KPVL M
Sbjct: 574 VFNEVLKVFNEDENIDAIVAGVFIPSIMKL-------GVDFSWTR-KFSKPVL-FTMKDD 624
Query: 415 VSE--KAKELLEKNGIPTYERPEDVASAAYALVEQAK 449
+ E +A+ +E++G+P Y PE A +V AK
Sbjct: 625 IEELRQARIEIERSGVPVYPTPERAVRALRHMVTVAK 661
>pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomyces coelicolor
>gi|3288603|emb|CAA19775.1| (AL031013) hypothetical
protein SC8A6.03c [Streptomyces coelicolor A3(2)]
Length = 714
Score = 295 bits (747), Expect = 7e-79
Identities = 170/456 (37%), Positives = 252/456 (54%), Gaps = 16/456 (3%)
Query: 8 PKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGVKAYKSVKDIPGEVD 66
P +AVIGAS +P K+G V +NL G ++PVN + +++ G KAYKSV D+PGEVD
Sbjct: 261 PASVAVIGASGEPGKIGNSVMRNLVDGGFAGEIHPVNPKADDILGRKAYKSVTDVPGEVD 320
Query: 67 LAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMRIIG 126
+A+ +P +FV L + G K + V+I +GF ETGE+ ++E +V +A R+G+R++G
Sbjct: 321 VAVFAIPARFVAAALEEVGRKRIPNAVLIPSGFAETGEQALQDE--IVAVAERHGVRLLG 378
Query: 127 PNCVGIMNTHADLNATFITVAK-KGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNM 185
PN G +T DL ATF T KG VA SQSG +G I+ G S + +GN
Sbjct: 379 PNIYGYYSTWQDLCATFCTPYDVKGGVALTSQSGGIGMAILGFARTTKTGVSAIVGLGNK 438
Query: 186 ADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKSESGAR 245
+DLD +L+ + + + IA+++E +++GR F+E A+ +KPV+ LKAG++ +GA+
Sbjct: 439 SDLDEDDLLTWFGEDPHTECIAMHLEDLKDGRAFVEAARATVPRKPVVVLKAGRTAAGAK 498
Query: 246 AASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAF-TQPLPRGKRVAIMTNAGG 304
AA SHTG+LAG +Y+ +Q+GV+ A ++EML ARA P P G V I+T AGG
Sbjct: 499 AAGSHTGALAGDDAVYDDILRQAGVIRAPGLNEMLEYARALPVLPAPEGDNVVIITGAGG 558
Query: 305 PGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLL 364
GVL +D + GL L + R+F+PP A NPVD+ Y T +L L
Sbjct: 559 SGVLLSDAVTDNGLSLMEIPPDLDRAFRAFIPPFGAAGNPVDITGGEPPSTYEATIRLGL 618
Query: 365 QDPNVDMLIA----ICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEKAK 420
+DP + L+ V P M E ++ +E KPV+A E+A
Sbjct: 619 EDPRIHALVLGYWHTIVTPP---MVFAELTARVVAEFRERGVEKPVVASLAGDVEVEEAC 675
Query: 421 ELLEKNGIPTY----ERPEDVASAAYALVEQAKNVG 452
+ L + G+ Y E+P V A Y A +G
Sbjct: 676 QYLFERGVVAYPYTTEKPVAVLGAKYRWARAAGLLG 711
>gi|11499522 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483184|pir||A69492 conserved hypothetical protein
AF1938 - Archaeoglobus fulgidus
>gi|2648606|gb|AAB89317.1| (AE000970) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 673
Score = 279 bits (706), Expect = 5e-74
Identities = 168/456 (36%), Positives = 264/456 (57%), Gaps = 21/456 (4%)
Query: 6 FNPKGIAVIGASNDPKKLGYEVFKNLKQYKG-GNVYPVNVREEEVQGVKAYKSVKDIPGE 64
F PK +AVIGAS K G+ + NLKQ G +YPVN +++ +K Y S+ DIP E
Sbjct: 222 FYPKSVAVIGASRTVGKPGFNIVWNLKQNGFMGKIYPVNPNADKILELKCYPSILDIPDE 281
Query: 65 VDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMRI 124
VD+AII VP K V + + +C +KG+KG VI+++GF E GE+G + E+ ++EIA ++G+RI
Sbjct: 282 VDMAIIAVPAKIVPEVMAECAQKGIKGAVIVSSGFSEEGEKGAEYERRVLEIAKKHGIRI 341
Query: 125 IGPNCVGIMNTHADLNATFI--TVAKKGNVAFISQSGALGAGIVYKTIKED---IGFSKF 179
GPN G++NT +F V KKGN+ I+Q+G L GI+ + + IGFSK
Sbjct: 342 FGPNTTGVLNTENGFITSFAIQPVIKKGNIGIIAQTG-LFLGIMMDIVTSNHPSIGFSKI 400
Query: 180 ISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGK 239
+ +GN D++ E++++L E+ K I +Y+EGI+NGR F +VA + +KP++ K+G+
Sbjct: 401 VGMGNKIDVEDYEVLDFLLKDEQTKVIGIYMEGIKNGRAFYDVAS--SAEKPIVVFKSGR 458
Query: 240 SESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFT-QPLPRGKRVAI 298
+E G +AA SHT S+ G +++A +Q+ ++ + DE+ + +AF+ QPLP+G RVAI
Sbjct: 459 TEYGQKAAMSHTASICGDDDVFDAVCRQANLVRVYSFDELFDVTKAFSLQPLPKGDRVAI 518
Query: 299 MTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVD---MIASARGED 355
+ G V +D GLKLA + T++++ P V NP+D M+
Sbjct: 519 IHYTGSGCVQGSDAAYFAGLKLAEFSKDTVDKISEVTPEWHNVNNPIDIWPMVEYYGAFK 578
Query: 356 YYRTA-KLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPV-LAMFMAG 413
Y+TA + +++D VD +IA CV +A E +++K+ GKP+ + A
Sbjct: 579 AYQTAIEAVMEDEGVDSVIA-CV---WANRLINADFEPDYKSLKKY--GKPIYFCVEGAR 632
Query: 414 YVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAK 449
V K LE NGIP Y + + + + AK
Sbjct: 633 DVVFDHKNALELNGIPVYTNVINAVNVLGKVTKYAK 668
>gi|11498537 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483066|pir||D69366 conserved hypothetical protein
AF0932 - Archaeoglobus fulgidus
>gi|2649664|gb|AAB90306.1| (AE001039) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 666
Score = 279 bits (706), Expect = 5e-74
Identities = 161/451 (35%), Positives = 259/451 (56%), Gaps = 12/451 (2%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDI 61
+ +FF + +AVIGAS +P K+G V ++L K +YP+N E+ G+KAY SVK +
Sbjct: 219 ISFFFKARSVAVIGASTNPIKVGNSVVRSLMSNKNLRIYPINPNASEILGLKAYPSVKSL 278
Query: 62 PGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETG-EEGKKEEKELVEIAHRY 120
P D+AI+ VP +FV D + + E GVKGVVII++GF E EEGK E+ L EIA +Y
Sbjct: 279 PEVPDIAIVTVPAEFVLDAVREAAEAGVKGVVIISSGFKEAEVEEGKVREERLREIARKY 338
Query: 121 GMRIIGPNCVGIMNTHADLNATFITV---AKKGNVAFISQSGALGAGIVYKTIKEDIGFS 177
G+RI+GPN GI++ +NA+F + KKG +A +SQSG + I++K D GFS
Sbjct: 339 GIRIVGPNTFGIVSVVGGINASFTPMFSEVKKGRIALVSQSGGICHYIIHKF--RDSGFS 396
Query: 178 KFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKA 237
+ +GN D+DF ++M +L + E +A+Y+EGI NGR E KR+ +K V+ +K+
Sbjct: 397 HILHLGNRCDVDFPDVMRFLREDENTDVVAVYVEGIDNGRGLFEELKRLCSEKKVVVMKS 456
Query: 238 GKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVA 297
G+S +A+ SHTGS+AG ++++ +A KQ+G +V T E++ A A + G VA
Sbjct: 457 GRSSVADKASVSHTGSMAGDYRVFASAMKQAGAVVVETPTELIDTAIAMEKFEVSG-GVA 515
Query: 298 IMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARG-EDY 356
++T G G++ AD ++ G +LA E+T+ +L+S LPP+ +NPVD+ S + +
Sbjct: 516 VLTIQAGLGIVAADIIESSGGRLARFGEETVRKLKSLLPPITLRENPVDLSFSGLNLKVF 575
Query: 357 YRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVS 416
+ +D +V +++ + V + + P E I+ I + + +L
Sbjct: 576 AEVIDTVCRDDDVGLVMFLYAVAPPSWVLPAEVISQIMGRITKPS----ILGYSSTPENY 631
Query: 417 EKAKELLEKNGIPTYERPEDVASAAYALVEQ 447
+ KE L+ + ++ E A A L E+
Sbjct: 632 AEIKEALKGSKTLIFDSVERAAKVAAILSEK 662
>pir||C82443 conserved hypothetical protein VCA0574 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657984|gb|AAF96476.1|
(AE004388) conserved hypothetical protein [Vibrio
cholerae]
Length = 893
Score = 261 bits (660), Expect = 1e-68
Identities = 156/454 (34%), Positives = 251/454 (54%), Gaps = 7/454 (1%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGVKAYKSVKD 60
L+ PK +AVIGAS + G V KNL Q G + PV V GV AYK++ D
Sbjct: 4 LNQLLRPKSVAVIGASVRSFRAGNIVMKNLLQGGFDGAIMPVTPYYPAVCGVLAYKTISD 63
Query: 61 IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
+P D+AI+ Q EKGVK V+++++ +G++ + + + IA
Sbjct: 64 LPIVPDIAILCTHASRNVSLFKQLAEKGVKQVIVLSSDMYSLDAQGEEIQAQCMTIAKSV 123
Query: 121 GMRIIGPNCVGIMNTHADLNATFITV-AKKGNVAFISQSGALGAGIVYKTIKEDIGFSKF 179
MRI+GPN +G++ N +F V A KGN+AF+SQS A+ I+ + IGFS F
Sbjct: 124 NMRILGPNSLGLILPWMQFNGSFSPVSALKGNIAFVSQSAAVCTTILDWANDKGIGFSAF 183
Query: 180 ISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGK 239
IS+GN +D+DFA+L++ L+ + AI LY++ IR+ R+F+ A+ ++ + ++ LK G+
Sbjct: 184 ISLGNASDIDFADLLDTLSTDKHTDAILLYVDTIRDARRFMSAARAASRNRRILVLKGGR 243
Query: 240 SESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLP-RGKRVAI 298
+++G +AA HTG IY++A +++G+L N E+ + T +P RG+R+AI
Sbjct: 244 TKAGRKAAQMHTGGDDTLDIIYDSAIRRTGMLRVNNTHELFAAVETLTHSVPLRGERLAI 303
Query: 299 MTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYR 358
+TN GGP ++ D L +RG KLA LE++ E+L LP + NPVD++ A Y
Sbjct: 304 ITNGGGPAIMAVDALLERGGKLAQLEDEIYEKLNQSLPQSWSHSNPVDIVGDADHLRYVS 363
Query: 359 TAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGK--PVLAMFMAGYVS 416
T +LL+ N+D ++ + A T A+ ++ A+++ K +L + +
Sbjct: 364 TLNILLESENIDAILIMHSPSAIAHSEQT--AQALVEAVQKHPRAKRFNILTNWSGELSA 421
Query: 417 EKAKELLEKNGIPTYERPEDVASAAYALVEQAKN 450
+ A+ L + GIPTY PE +A LVE +N
Sbjct: 422 KPARTLFNQAGIPTYRTPESAVTAFMHLVEYRRN 455
>dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in UNG 3' region
[Escherichia coli]
Length = 612
Score = 234 bits (590), Expect = 2e-60
Identities = 151/454 (33%), Positives = 238/454 (52%), Gaps = 19/454 (4%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGVKAYKSVKD 60
L+ PK IAVIGAS P + GY + +NL G V PV + V GV A+ +
Sbjct: 6 LEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAVLGVLAWPDIAS 65
Query: 61 IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
+P DLA++ L + GEKG K +I++A + ++L A R+
Sbjct: 66 LPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAP--------ASQHEDLRACALRH 117
Query: 121 GMRIIGPNCVGIMNTHADLNATFITVA-KKGNVAFISQSGALGAGIVYKTIKEDIGFSKF 179
MR++GPN +G++ LNA+F V K+G +AFISQS A+ I+ + +GFS F
Sbjct: 118 NMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMGFSYF 177
Query: 180 ISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGK 239
I++G+ D+D EL++YLA + AI LY+E + + R+F+ A+ ++ KP++ +K+G+
Sbjct: 178 IALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVIKSGR 237
Query: 240 SESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLP-RGKRVAI 298
S + R + + AG ++AA +++G+L E+ S + P RG R+ I
Sbjct: 238 SPAAQRLLN----TTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGDRLMI 293
Query: 299 MTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYR 358
++N P L D L R KLA L E+T ++LR LP A+ NP+D+ A E Y +
Sbjct: 294 ISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSEHYIK 353
Query: 359 TAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPV--LAMFMAGYVS 416
T +LL + D L+ I A TE A+ +I A+K K V L + + S
Sbjct: 354 TLDILLHSQDFDALMVI--HSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEHSS 411
Query: 417 EKAKELLEKNGIPTYERPEDVASAAYALVEQAKN 450
++A+ L + G+PTY PE +A +VE +N
Sbjct: 412 QEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRN 445
>sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA INTERGENIC REGION
>gi|7466397|pir||G65036 hypothetical protein b2584 -
Escherichia coli (strain K-12)
>gi|1788938|gb|AAC75637.1| (AE000344) orf, hypothetical
protein [Escherichia coli K12]
Length = 886
Score = 234 bits (590), Expect = 2e-60
Identities = 151/454 (33%), Positives = 238/454 (52%), Gaps = 19/454 (4%)
Query: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGVKAYKSVKD 60
L+ PK IAVIGAS P + GY + +NL G V PV + V GV A+ +
Sbjct: 6 LEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAVLGVLAWPDIAS 65
Query: 61 IPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
+P DLA++ L + GEKG K +I++A + ++L A R+
Sbjct: 66 LPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAP--------ASQHEDLRACALRH 117
Query: 121 GMRIIGPNCVGIMNTHADLNATFITVA-KKGNVAFISQSGALGAGIVYKTIKEDIGFSKF 179
MR++GPN +G++ LNA+F V K+G +AFISQS A+ I+ + +GFS F
Sbjct: 118 NMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMGFSYF 177
Query: 180 ISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGK 239
I++G+ D+D EL++YLA + AI LY+E + + R+F+ A+ ++ KP++ +K+G+
Sbjct: 178 IALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVIKSGR 237
Query: 240 SESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLP-RGKRVAI 298
S + R + + AG ++AA +++G+L E+ S + P RG R+ I
Sbjct: 238 SPAAQRLLN----TTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGDRLMI 293
Query: 299 MTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYR 358
++N P L D L R KLA L E+T ++LR LP A+ NP+D+ A E Y +
Sbjct: 294 ISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSEHYIK 353
Query: 359 TAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPV--LAMFMAGYVS 416
T +LL + D L+ I A TE A+ +I A+K K V L + + S
Sbjct: 354 TLDILLHSQDFDALMVI--HSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEHSS 411
Query: 417 EKAKELLEKNGIPTYERPEDVASAAYALVEQAKN 450
++A+ L + G+PTY PE +A +VE +N
Sbjct: 412 QEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRN 445
>emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas mendocina]
Length = 711
Score = 199 bits (501), Expect = 5e-50
Identities = 120/352 (34%), Positives = 189/352 (53%), Gaps = 9/352 (2%)
Query: 8 PKGIAVIGASNDPKKLGYE-VFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDIPGEVD 66
P+ +AV+GAS+DP ++G + L+ G + PVN E+QG+ AY SV +P D
Sbjct: 20 PRSVAVVGASSDPHRIGGRPIAYMLRNGFTGRILPVNPNRTEIQGLPAYASVDALPEAPD 79
Query: 67 LAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMRIIG 126
+AII VP V +T+ G KG + ++ ++GF E GEEG + +VE A MR++G
Sbjct: 80 VAIIAVPAPQVLETVQVLGRKGARSAIVFSSGFSEVGEEGVAMQDAIVEAARAANMRLLG 139
Query: 127 PNCVGIMNTHADLNATFITVAKK-----GNVAFISQSGALGAGIVYKTIKEDIGFSKFIS 181
PN +G+ N + A F T ++ G V +QSGA GA ++ + + +G ++
Sbjct: 140 PNALGVFNANLGYYAFFSTSLERGIPLAGRVGIATQSGAYGAHLLGLSRQRGLGTPICVA 199
Query: 182 VGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKK-KPVIALKAGKS 240
GN AD+ + + +L ++ E + Y E IRN F+ + + KPVI K G+S
Sbjct: 200 TGNEADVTLGDAIGWLVESPEVDVVMAYAESIRNVDSFLAALEAAHRAGKPVILHKVGRS 259
Query: 241 ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQP-LPRGKRVAIM 299
E G RAA SHT SLAG K+ +A V+ A T +E++ +A TQ +P + ++
Sbjct: 260 ELGGRAAMSHTASLAGDDKVLDAVLADYAVVRARTTEELVDIAYLATQRIIPVNNSLGMI 319
Query: 300 TNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASA 351
T +GG G++ +D + GL + + E+ L+ L A+ NPVD A A
Sbjct: 320 TVSGGAGIIVSDAAEDVGLPMPPMPEEAQARLKQRL-HYASPLNPVDCTAQA 370
>pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946928|gb|AAG04406.1|AE004534_4
(AE004534) pimeloyl-CoA synthetase [Pseudomonas
aeruginosa]
Length = 715
Score = 197 bits (496), Expect = 2e-49
Identities = 117/352 (33%), Positives = 191/352 (54%), Gaps = 9/352 (2%)
Query: 8 PKGIAVIGASNDPKKLGYE-VFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDIPGEVD 66
P+ +AVIGAS+DP ++G + L+ G + PVN E+QG+ A+ SV ++P D
Sbjct: 24 PRSVAVIGASSDPTRIGGRPIAYMLRHGYAGQILPVNPNRAEIQGLPAFASVAELPQAPD 83
Query: 67 LAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMRIIG 126
+AI+ VP V +T+ G +G + ++ ++GF E GE G + +V A +GMR++G
Sbjct: 84 VAIVAVPAPQVLETVRALGRQGARSAIVFSSGFSEVGEAGAAMQDAVVAAAREHGMRLLG 143
Query: 127 PNCVGIMNTHADLNATFIT-----VAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFIS 181
PN +G N++ A F T V G V +QSGA GA ++ + +G ++
Sbjct: 144 PNALGAFNSNLGYYAFFSTSLERGVPLPGRVGIATQSGAYGAHLLGMARQRRLGTPICVA 203
Query: 182 VGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKK-KPVIALKAGKS 240
GN AD+ + + +L ++ E + Y E IRN F+ + + KPVI K G+S
Sbjct: 204 TGNEADVTLGDSIGWLVESPEIDVVMAYAESIRNVDSFLAALEAAHRAGKPVILHKVGRS 263
Query: 241 ESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPL-PRGKRVAIM 299
G+RAA SHT SLAG K+ +A V+ A T +E++ +A T+ + P G + ++
Sbjct: 264 ALGSRAALSHTASLAGDDKVLDAVLGDYAVIRARTTEELMDIAYLATRRIYPVGNSLGMI 323
Query: 300 TNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASA 351
T +GG G++ +D ++ GL + + + E L++ L A+ NPVD A A
Sbjct: 324 TVSGGAGIIVSDVAEEVGLPMPPMPDMAQERLKARL-SFASPINPVDCTAQA 374
>pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelicolor
>gi|2661695|emb|CAA15799.1| (AL009204) hypothetical
protein SC9B10.09 [Streptomyces coelicolor A3(2)]
Length = 1039
Score = 193 bits (486), Expect = 3e-48
Identities = 126/417 (30%), Positives = 202/417 (48%), Gaps = 37/417 (8%)
Query: 8 PKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVR----EEEVQGVKAYKSVKDIP 62
P +AV+GA P +G + N++ G +Y VN +E+ GV A +SV DI
Sbjct: 212 PGSVAVVGAGRTPGGVGRSILGNIRDAGYTGRLYAVNRAFPEDMKELDGVPACRSVGDID 271
Query: 63 GEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGM 122
G VDLA++ VP + V D + CGE GV+G+V+I+AG+ ++G EG++ ++ LV A YGM
Sbjct: 272 GPVDLAVVTVPAEHVPDVVTACGEHGVQGLVVISAGYADSGPEGRERQRALVRHARTYGM 331
Query: 123 RIIGPNCVGIMNTHAD--LNATFI-TVAKKGNVAFISQSGALGAGIVYKTIKED------ 173
RIIGPN GI+NT D LNA+ + + G + +QSGA+G ++ + +
Sbjct: 332 RIIGPNAFGIINTSPDVRLNASLAPEMPRAGRIGLFAQSGAIGIALLSRLHRRGGGVTGV 391
Query: 174 IGFSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVI 233
G S F+S GN AD+ ++++Y D + +Y+E I N RKF +A+R KP++
Sbjct: 392 TGVSTFVSSGNRADVSGNDVLQYWYDDPQTDVALMYLESIGNPRKFTRLARRTAAAKPLV 451
Query: 234 ALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFT-QPLPR 292
++ G G + A +Q+GV+ +TI +++ QPLP
Sbjct: 452 VVQ-GARHGGVAPQGHAVRATRLPHATVSALLRQAGVIRVDTITDLVDAGLLLARQPLPA 510
Query: 293 GKRVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASAR 352
G RVAI+ N+ G+LT D GL+ + P+D+ +A
Sbjct: 511 GPRVAILGNSESLGLLTYDACLSEGLR---------------------PQPPLDLTTAAS 549
Query: 353 GEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAM 409
+D++ L D D ++ + G +R+ KPVL +
Sbjct: 550 ADDFHAALARALADDTCDAVVVTAIPTLGEGAAGDAALAEALRSAAAAVPTKPVLVV 606
>gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacterium sp. NRC-1]
Length = 542
Score = 189 bits (475), Expect = 6e-47
Identities = 109/294 (37%), Positives = 166/294 (56%), Gaps = 5/294 (1%)
Query: 155 ISQSGALGAGIVYKTIKEDIGFSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIR 214
+SQSGA ++ + IGF S+GN A L + M+ AD + I Y+EG+
Sbjct: 1 MSQSGAFITAVLDWANDQGIGFKDIASLGNKAVLSETDFMQAWADDPDTNVILGYLEGVD 60
Query: 215 NGRKFIEVAKRVTKKKPVIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVAN 274
+GR+FI+ A+ VT+ P + +K+G++E+GA+AASSHTG++AGS YEA FKQ+GV+ A
Sbjct: 61 DGREFIDDAREVTQDTPAVVVKSGRTEAGAQAASSHTGTIAGSEAAYEAGFKQAGVVRAE 120
Query: 275 TIDEMLSMARAFT-QPLPRGKRVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRS 333
+ E+ ARA P+P + VA++TNAGGPGV+ D + L +A+ E+ TI+ L+
Sbjct: 121 NVQELFDFARALDGLPMPDSEDVAVITNAGGPGVMATDAVGDSRLSMASFEDDTIDALQG 180
Query: 334 FLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGI 393
+P A V NPVD+I A + + +L D +V + + T G+
Sbjct: 181 SMPDEANVYNPVDVIGDAEIDRFRTAIDTVLADEHVGCALVLSAPTAVIDYT---ELSGV 237
Query: 394 IRAIKEVNNGKPVLAMFMAGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQ 447
I A++E +N KPV+ M G +E+A ++L GIP Y P + AL Q
Sbjct: 238 ITALQEKHN-KPVVTCLMGGERTEQATDVLGDAGIPNYFDPARAIGSLDALAVQ 290
>pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951261|gb|AAG08363.1|AE004910_10
(AE004910) hypothetical protein [Pseudomonas aeruginosa]
Length = 696
Score = 159 bits (398), Expect = 6e-38
Identities = 108/326 (33%), Positives = 164/326 (50%), Gaps = 15/326 (4%)
Query: 37 GNVYPVNVREEEVQGVKAYKSVKDIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIIT 96
G ++ VN + E++GV SV D+P D A + ++ D + KG G +
Sbjct: 37 GQLWLVNPQHAELEGVPCVASVADLPCGPDAAFVATNRELTLDAVAALAAKGAGGAICYA 96
Query: 97 AGFGETGEEGKKEEKELVEIAHRYGMRIIGPNCVGIMN-THADLNATFITVAKKG----- 150
+GF ETGE+G ++ L+ A M ++GPNC G+++ H A VA G
Sbjct: 97 SGFAETGEQGLAVQRRLLAAAGE--MALLGPNCYGLLDYLH---GAALWPVAHGGRQVER 151
Query: 151 NVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADLDFAELMEYLADTEEDKAIALYI 210
VA ++QSG + + + SVGN A L AELM+ L D AI L++
Sbjct: 152 GVAVLTQSGNFAYNLSMSDRSLPVAY--MASVGNQAQLGIAELMDVLLDEPRVTAIGLHL 209
Query: 211 EGIRNGRKFIEVA-KRVTKKKPVIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSG 269
EG++N F A K + K PVIALK G S+ GA A SHT SLAGS +Y++ F++ G
Sbjct: 210 EGLKNVPGFARAAYKALQKGVPVIALKTGVSKIGAALALSHTSSLAGSDALYDSLFERLG 269
Query: 270 VL-VANTIDEMLSMARAFTQPLPRGKRVAIMTNAGGPGVLTADELDKRGLKLANLEEKTI 328
V+ V+ + + ++ A LP G + + +GG L AD ++ GL L + +
Sbjct: 270 VIRVSGPVSFVETLKAAACGHLPGGPSLVALACSGGDAGLIADYAERNGLGLPSFDAGQR 329
Query: 329 EELRSFLPPMAAVKNPVDMIASARGE 354
+EL LP A + NP+D + G+
Sbjct: 330 DELAGVLPDYANIANPLDFTTAIWGD 355
>pir||A72707 probable succinyl-CoA synthetase alpha chain APE1072 - Aeropyrum
pernix (strain K1) >gi|5104742|dbj|BAA80057.1|
(AP000060) 297aa long hypothetical succinyl-CoA
synthetase alpha chain [Aeropyrum pernix]
Length = 297
Score = 88.5 bits (216), Expect = 1e-16
Identities = 78/272 (28%), Positives = 126/272 (45%), Gaps = 27/272 (9%)
Query: 24 GYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDIPGE---VDLAIIVVPKKFVKDT 80
G +V + KGG+ EV GV Y SVK+ E ++ +I+ VP F D
Sbjct: 37 GTKVVAGVTPGKGGS---------EVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDA 87
Query: 81 LIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMRIIGPNCVGIMNT-HADL 139
+ + + G++ VV+IT G + V A + G IIGPNC G + A +
Sbjct: 88 VYEAVDAGIRLVVVITEGIPV------HDTMRFVNYARQKGATIIGPNCPGAITPGQAKV 141
Query: 140 NATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGN--MADLDFAELMEYL 197
+ K+G VA +S+SG L I Y ++ IG S I +G + L F E ++
Sbjct: 142 GIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLF 201
Query: 198 ADTEEDKAIALYIE-GIRNGRKFIEVAKRVTKKKPVIALKAGKSESGARAASSHTGSL-- 254
+ + +A+ L E G + E+ K+ KPVIA AG++ + H G++
Sbjct: 202 QEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRT-APPEKRMGHAGAIIM 260
Query: 255 --AGSWKIYEAAFKQSGVLVANTIDEMLSMAR 284
G+++ A +++GV VA T E+ + R
Sbjct: 261 MGTGTYEGKVKALREAGVEVAETPFEVPELVR 292
>gi|11499767 succinyl-CoA synthetase, alpha subunit (sucD-2) [Archaeoglobus
fulgidus] >gi|6647837|sp|O28098|SUD2_ARCFU SUCCINYL-COA
SYNTHETASE ALPHA CHAIN 2 (SCS-ALPHA 2)
>gi|7437885|pir||A69523 succinate--CoA ligase
(ADP-forming) (EC 6.2.1.5) alpha-2 chain - Archaeoglobus
fulgidus >gi|2648340|gb|AAB89067.1| (AE000954)
succinyl-CoA synthetase, alpha subunit (sucD-2)
[Archaeoglobus fulgidus]
Length = 287
Score = 85.0 bits (207), Expect = 2e-15
Identities = 72/247 (29%), Positives = 114/247 (46%), Gaps = 23/247 (9%)
Query: 48 EVQGVKAYKSVKDIPGEVDL--AIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEE 105
EV GV Y SVK+ E D ++I VP F D +++ + G+K +V IT G
Sbjct: 47 EVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPV---- 102
Query: 106 GKKEEKELVEIAHRYGMRIIGPNCVGIMN---THADLNATFITVAKKGNVAFISQSGALG 162
+E ++ G +IGPNC GI++ TH L + + K GNV +S+SG L
Sbjct: 103 --HDELKMYWRVKEAGATLIGPNCPGIISPGKTH--LGIMPVQIFKPGNVGIVSRSGTLT 158
Query: 163 AGIVYKTIKEDIGFSKFISVG--NMADLDFAELMEYLADTEEDKAIALYIE-GIRNGRKF 219
I Y K +G S + +G + DF E++ D +E KA+ L E G R+
Sbjct: 159 YQIAYNLTKLGLGQSTVVGIGGDRIIGTDFVEVLRLFEDDKETKAVVLVGEIGGRDEEVA 218
Query: 220 IEVAKRVTKKKPVIALKAGKSESGARAASSHTGSL----AGSWKIYEAAFKQSGVLVANT 275
E + ++ KPV+ AG + + H G++ G+ + A + +G V T
Sbjct: 219 AEFIREMS--KPVVGYVAGLTAPPGK-RMGHAGAIIEGGVGTAESKIKALEAAGARVGKT 275
Query: 276 IDEMLSM 282
E+ +
Sbjct: 276 PMEVAEL 282
>sp|Q58643|SUCD_METJA SUCCINYL-COA SYNTHETASE ALPHA CHAIN (SCS-ALPHA)
>gi|2118349|pir||E64455 succinate--CoA ligase
(ADP-forming) (EC 6.2.1.5) alpha chain - Methanococcus
jannaschii >gi|1591879|gb|AAB99250.1| (U67565)
succinyl-CoA synthetase, alpha subunit (sucD)
[Methanococcus jannaschii]
Length = 294
Score = 82.3 bits (200), Expect = 1e-14
Identities = 69/243 (28%), Positives = 115/243 (46%), Gaps = 19/243 (7%)
Query: 47 EEVQGVKAYKSVKDIPGEVDL--AIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGE 104
+ V GV + +VK+ E D ++I VP F KD + + + G++ +V+IT
Sbjct: 51 QNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPV--- 107
Query: 105 EGKKEEKELVEIAHRYGMRIIGPNCVGIMNTHAD-LNATFITVAKKGNVAFISQSGALGA 163
+ E V A G++IIGPN GI + L + V K+G+V +S+SG L
Sbjct: 108 ---HDTMEFVNYAEDVGVKIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTY 164
Query: 164 GIVYKTIKEDIGFSKFISVGN--MADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIE 221
I ++ K G S + +G + L + E+++ +E +AI + G G E
Sbjct: 165 EIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMI--GEIGGGAEEE 222
Query: 222 VAKRVTK-KKPVIALKAGKSESGARAASSHTGSLA----GSWKIYEAAFKQSGVLVANTI 276
AK + K KKPVI AG+S + H G++ G+ + A +++G VA I
Sbjct: 223 AAKFIEKMKKPVIGYIAGQSAPEGK-RMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNI 281
Query: 277 DEM 279
++
Sbjct: 282 SDI 284
>gb|AAK42618.1| Succinyl-CoA synthetase, alpha subunit (sucD) [Sulfolobus
solfataricus]
Length = 260
Score = 81.9 bits (199), Expect = 1e-14
Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 30/266 (11%)
Query: 22 KLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDI--PGEVDLAIIVVPKKFVKD 79
K G ++ + KGG +V V Y +VKD E D +II VP ++ D
Sbjct: 3 KYGTKIVAGVTPGKGGT---------QVNSVPVYDTVKDAMKEHEADASIIFVPARYAVD 53
Query: 80 TLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMRIIGPNCVGIMNTHADL 139
+ + + G+K +V IT + ++ A G RIIGPNC GI+ L
Sbjct: 54 AIYEAVDAGIKLIVTITEHIPVL------DMARAIKYARARGARIIGPNCPGIIAPEESL 107
Query: 140 NATFITVA-KKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVG-----NMADLDFAEL 193
A KKG + +S+SG L + +G S I +G + L+ A++
Sbjct: 108 VGILPARAFKKGKIGIVSRSGTLTYEVSELLKNSGMGQSTVIGIGGDPIIGTSTLEVAKM 167
Query: 194 MEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGKSESGARAASSHTGS 253
+ D E +K + + G + E KR KKP+IA AG + + H G+
Sbjct: 168 FD--QDPETEKIVVIGEIGGTMEERLAEAYKRGEIKKPIIAYIAGMT-APREKRMGHAGA 224
Query: 254 LA----GSWKIYEAAFKQSGVLVANT 275
+ G+++ AFK++G+ +ANT
Sbjct: 225 VVYMGMGTFESKIRAFKEAGIPIANT 250
>gb|AAA27504.2| (M35832) succinyl-CoA synthetase alpha-subunit [Thermus aquaticus]
Length = 288
Score = 78.8 bits (191), Expect = 1e-13
Identities = 71/248 (28%), Positives = 112/248 (44%), Gaps = 20/248 (8%)
Query: 48 EVQGVKAYKSVKDIPG--EVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEE 105
EV GV Y +VK+ EVD +II VP D ++ G+ +V+IT G
Sbjct: 46 EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTL--- 102
Query: 106 GKKEEKELVEIAHRYGMRIIGPNCVGIMNTH-ADLNATFITVAKKGNVAFISQSGALGAG 164
+ VE G R+IG NC GI++ H + V K+G V IS+SG L
Sbjct: 103 ---DMVRAVEEIKALGSRLIGGNCPGIISAHLPKIGIMPGHVFKRGRVGIISRSGTLRHE 159
Query: 165 IVYKTIKEDIGFSKFISVGN--MADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEV 222
+ +G + + +G + L F +L+ + E +A+ L G G E
Sbjct: 160 AAAALSQAGLGTTTTVGIGGDPVRRLTFKDLLPLFNEDPETEAVVLI--GEIGGSDEEEA 217
Query: 223 AKRVT--KKKPVIALKAGKSESGARAASSHTGSL----AGSWKIYEAAFKQSGVLVANTI 276
A V KKPV+ G+S + H G++ G+ + AF ++G+ VA+TI
Sbjct: 218 AAWVKDHMKKPVVGFIGGRSAPKGK-RMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTI 276
Query: 277 DEMLSMAR 284
DE++ + +
Sbjct: 277 DEIVELVK 284
>gi|11499134 succinyl-CoA synthetase, alpha subunit (sucD-1) [Archaeoglobus
fulgidus] >gi|6647839|sp|O28733|SUD1_ARCFU SUCCINYL-COA
SYNTHETASE ALPHA CHAIN 1 (SCS-ALPHA 1)
>gi|7437884|pir||B69442 succinate--CoA ligase
(ADP-forming) (EC 6.2.1.5) alpha-1 chain - Archaeoglobus
fulgidus >gi|2649022|gb|AAB89707.1| (AE000996)
succinyl-CoA synthetase, alpha subunit (sucD-1)
[Archaeoglobus fulgidus]
Length = 291
Score = 77.6 bits (188), Expect = 3e-13
Identities = 76/289 (26%), Positives = 133/289 (45%), Gaps = 31/289 (10%)
Query: 9 KGIAVIGASNDPKKL---GYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDIPGEV 65
+GI S K++ G +V + KGG+ EV G+ Y +V++ E
Sbjct: 17 QGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGS---------EVHGIPVYNTVEEAVAET 67
Query: 66 --DLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMR 123
D +II VP +F D + + + G++ VV +T G E ++L E+
Sbjct: 68 NADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDE--MLIHRKLREVKSM---- 121
Query: 124 IIGPNCVGIMNT-HADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISV 182
++GPNC G+++ + + +GN+ +S+SG L I K IG S + +
Sbjct: 122 LLGPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQICENLTKAGIGQSTVVGI 181
Query: 183 GN--MADLDFAELMEYLADTEEDKAIALYIE-GIRNGRKFIEVAKRVTKKKPVIALKAGK 239
G M L F ++++ + EE KA+ L E G K E K+++ KPV+A AG+
Sbjct: 182 GGDPMPGLTFVDVLKMFEEDEETKAVLLVGEIGGTAEEKAAEFIKQMS--KPVVAFIAGR 239
Query: 240 SESGARAASSHTGSL----AGSWKIYEAAFKQSGVLVANTIDEMLSMAR 284
+ + H G++ G+ + AA + +G VA T+ +++ R
Sbjct: 240 TAPPGK-RMGHAGAIIEGSTGTAEAKMAALRDAGARVAETLLDVVKEVR 287
>pir||F81399 succinate--CoA ligase (ADP-forming) (EC 6.2.1.5) alpha chain Cj0534
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968002|emb|CAB75170.1| (AL139075) succinyl-coA
synthetase alpha chain [Campylobacter jejuni]
Length = 289
Score = 77.6 bits (188), Expect = 3e-13
Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 23/251 (9%)
Query: 24 GYEVFKNLKQYKGGNVYPVN-VREEEVQGVKAYKSVKDIPGEVDLAIIVVPKKFVKDTLI 82
G + + +KGG + V + VKA K+ D+++I VP V D++I
Sbjct: 32 GTNIVGGITPHKGGQTHLGKPVFDTVADAVKATKA--------DVSLIFVPAFAVGDSVI 83
Query: 83 QCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMRIIGPNCVGIMNT-HADLNA 141
+ + G+K V+IT K+ + A++ GM+IIGPNC GI+ + L
Sbjct: 84 EAADAGIKLAVVITE------HTPVKDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGI 137
Query: 142 TFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGN--MADLDFAELMEYLAD 199
+ KKG V IS+SG L + ++ G S + +G + L + EL+
Sbjct: 138 MPGFIFKKGCVGLISKSGTLTYEAANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQK 197
Query: 200 TEEDKAIALYIEGIRNGRKFIEVAKRVTK--KKPVIALKAGKSESGARAASSHTGSLAGS 257
+E KAI + G G +E AK + + KPV+A AG + + H G++ GS
Sbjct: 198 DDETKAIVMI--GEIGGSLEVEAAKFIKENISKPVVAFIAGATAPKGK-RMGHAGAIVGS 254
Query: 258 WKIYEAAFKQS 268
AA K++
Sbjct: 255 ADESAAAKKEA 265
>emb|CAB92672.1| (AL356832) succinyl CoA synthetase alpha chain [Streptomyces
coelicolor A3(2)]
Length = 294
Score = 74.9 bits (181), Expect = 2e-12
Identities = 80/292 (27%), Positives = 125/292 (42%), Gaps = 49/292 (16%)
Query: 10 GIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKDIPGEVDLAI 69
G V+G N P+K G V + G V +E ++ A ++++
Sbjct: 32 GTEVVGGVN-PRKAGTSV-----DFDGNEVPVFGTVKEAIEKTGA-----------NVSV 74
Query: 70 IVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGE------EGKKEEKELVEIAHRYGMR 123
I VP+KF KD +++ + + V+IT G GKK K R
Sbjct: 75 IFVPEKFTKDAVVEAIDAEIPLAVVITEGIAVHDSAAFWSYAGKKGNK----------TR 124
Query: 124 IIGPNCVGIMNTHADLNATFI--TVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFIS 181
IIGPNC GI+ T N I + K G + +S+SG L ++Y+ DIGFS +
Sbjct: 125 IIGPNCPGII-TPGQSNVGIIPGDITKPGRIGLVSKSGTLTYQMMYEL--RDIGFSTAVG 181
Query: 182 VGN---MADLDFAELMEYLADTEEDKAIAL-YIEGIRNGRKFIEVAKRVTKKKPVIALKA 237
+G + L + AD E D + + I G R ++K VT KPV+ A
Sbjct: 182 IGGDPIIGTTHIDALAAFEADPETDLIVMIGEIGGDAEERAAEYISKNVT--KPVVGYVA 239
Query: 238 GKSESGARAASSHTGSL----AGSWKIYEAAFKQSGVLVANTIDEMLSMARA 285
G + + H G++ +G+ + + A + +GV V T E +ARA
Sbjct: 240 GFTAPEGK-TMGHAGAIVSGSSGTAQAKKEALEAAGVKVGKTPTETAKLARA 290
>sp|P09143|SUCD_THEFL SUCCINYL-COA SYNTHETASE ALPHA CHAIN (SCS-ALPHA)
>gi|68575|pir||SYTWSA succinate--CoA ligase
(ADP-forming) (EC 6.2.1.5) alpha chain [validated] -
Thermus aquaticus >gi|48178|emb|CAA38007.1| (X54073)
succinate--CoA ligase (ADP-forming) [Thermus aquaticus
flavus] >gi|581794|emb|CAA39507.1| (X56033) succinyl-CoA
synthetase [Thermus aquaticus]
>gi|581798|emb|CAA31303.1| (X12815) succinyl-CoA
synthetase alpha-subunit (AA 1-288) [Thermus aquaticus]
>gi|227823|prf||1712304D succinyl CoA
synthetase:SUBUNIT=alpha [Thermus aquaticus flavus]
Length = 288
Score = 74.5 bits (180), Expect = 2e-12
Identities = 69/248 (27%), Positives = 110/248 (43%), Gaps = 20/248 (8%)
Query: 48 EVQGVKAYKSVKDIPG--EVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEE 105
EV GV Y +VK+ EVD +II VP D ++ G+ +V+IT G
Sbjct: 46 EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTL--- 102
Query: 106 GKKEEKELVEIAHRYGMRIIGPNCVGIMNT-HADLNATFITVAKKGNVAFISQSGALGAG 164
+ VE G R+IG NC GI++ + V K+G V IS+SG L
Sbjct: 103 ---DMVRAVEEIKALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYE 159
Query: 165 IVYKTIKEDIGFSKFISVGN--MADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEV 222
+ +G + + +G + F +L+ + E +A+ L G G E
Sbjct: 160 AAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLI--GEIGGSDEEEA 217
Query: 223 AKRVT--KKKPVIALKAGKSESGARAASSHTGSL----AGSWKIYEAAFKQSGVLVANTI 276
A V KKPV+ G+S + H G++ G+ + AF ++G+ VA+TI
Sbjct: 218 AAWVKDHMKKPVVGFIGGRSAPKGK-RMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTI 276
Query: 277 DEMLSMAR 284
DE++ + +
Sbjct: 277 DEIVELVK 284
>prf||1708208A succinyl CoA synthetase [Thermus aquaticus]
Length = 288
Score = 74.5 bits (180), Expect = 2e-12
Identities = 69/248 (27%), Positives = 110/248 (43%), Gaps = 20/248 (8%)
Query: 48 EVQGVKAYKSVKDIPG--EVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEE 105
EV GV Y +VK+ EVD +II VP D ++ G+ +V+IT G
Sbjct: 46 EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTL--- 102
Query: 106 GKKEEKELVEIAHRYGMRIIGPNCVGIMNT-HADLNATFITVAKKGNVAFISQSGALGAG 164
+ VE G R+IG NC GI++ + V K+G V IS+SG L
Sbjct: 103 ---DMVRAVEEIKALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYE 159
Query: 165 IVYKTIKEDIGFSKFISVGN--MADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEV 222
+ +G + + +G + F +L+ + E +A+ L G G E
Sbjct: 160 AAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLI--GEIGGSDEEEA 217
Query: 223 AKRVT--KKKPVIALKAGKSESGARAASSHTGSL----AGSWKIYEAAFKQSGVLVANTI 276
A V KKPV+ G+S + H G++ G+ + AF ++G+ VA+TI
Sbjct: 218 AAWVKDHMKKPVVGFIGGRSAPKGK-RMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTI 276
Query: 277 DEMLSMAR 284
DE++ + +
Sbjct: 277 DEIVELVK 284
>prf||1414360A succinyl-CoA synthetase alpha [Thermus aquaticus]
Length = 288
Score = 73.4 bits (177), Expect = 5e-12
Identities = 69/248 (27%), Positives = 110/248 (43%), Gaps = 20/248 (8%)
Query: 48 EVQGVKAYKSVKDIPG--EVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEE 105
EV GV Y +VK+ EVD +II VP D ++ G+ +V+IT G
Sbjct: 46 EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTL--- 102
Query: 106 GKKEEKELVEIAHRYGMRIIGPNCVGIMNT-HADLNATFITVAKKGNVAFISQSGALGAG 164
+ VE G R+IG NC GI++ + V K+G V IS+SG L
Sbjct: 103 ---DMVRAVEEIKALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYE 159
Query: 165 IVYKTIKEDIGFSKFISVGN--MADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEV 222
+ +G + + +G + F +L+ + E +A+ L G G E
Sbjct: 160 AAAALSQAGLGTTTTVGIGGDPVITGTFKDLLPLFNEDPETEAVVLI--GEIGGSDEEEA 217
Query: 223 AKRVT--KKKPVIALKAGKSESGARAASSHTGSL----AGSWKIYEAAFKQSGVLVANTI 276
A V KKPV+ G+S + H G++ G+ + AF ++G+ VA+TI
Sbjct: 218 AAWVKDHMKKPVVGFIGGRSAPKGK-RMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTI 276
Query: 277 DEMLSMAR 284
DE++ + +
Sbjct: 277 DEIVELVK 284
>pir||F81180 conserved hypothetical protein NMB0593 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225823|gb|AAF41021.1| (AE002415) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 808
Score = 72.2 bits (174), Expect = 1e-11
Identities = 74/302 (24%), Positives = 124/302 (40%), Gaps = 20/302 (6%)
Query: 4 YFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGVKAYKSVKDIP 62
YFF P I +IGAS P LG V NL G + PVN R + G+ AY S+ IP
Sbjct: 9 YFFMPNHIILIGASEQPYSLGERVLSNLLSTPFQGKITPVNPRHHTIAGLPAYTSLNKIP 68
Query: 63 GEVDLAI-IVVPKKFVKDTLIQ-CGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
G DL I + +P + DTL + C +K ++ +++I + E E + H
Sbjct: 69 GNADLIIAVTLPDSY--DTLFKTCRKKQLRHIILIQDWDNLSAAELHTAE-TAIRKHHGN 125
Query: 121 GMRIIGPNCVGIMNTHADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI 180
G+ I GI LN + G+ A ++ + A+ I K G S+ I
Sbjct: 126 GLNITACTTAGIQLPSLGLNISTQDGYAAGHTAILTGNAAVSRQIDNILNKLRQGTSRHI 185
Query: 181 SV-GNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGK 239
S+ ++ + A+ + + K L+ + RK ++ T+ P+I +
Sbjct: 186 SLHPGISPITSADWLNRFGHSLHTKTAVLHHNPEEDQRKLFSAIRQFTRHTPLILHITCR 245
Query: 240 SESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAIM 299
+ RA + + LV+ D++ + RA LP R+ I+
Sbjct: 246 TTETDRA-------------VLHCLARHCNFLVSFNADDLEAALRAQLSDLPPLSRLDIL 292
Query: 300 TN 301
++
Sbjct: 293 SD 294
>pir||D81924 hypothetical protein NMA0796 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379516|emb|CAB84079.1|
(AL162754) hypothetical protein NMA0796 [Neisseria
meningitidis Z2491]
Length = 808
Score = 70.2 bits (169), Expect = 4e-11
Identities = 73/302 (24%), Positives = 123/302 (40%), Gaps = 20/302 (6%)
Query: 4 YFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGVKAYKSVKDIP 62
YFF P I +IGAS P LG V NL G + PVN R + G+ AY S+ IP
Sbjct: 9 YFFMPNHIILIGASERPYSLGERVLSNLLSTPFQGKITPVNPRHHTIAGLPAYTSLNKIP 68
Query: 63 GEVDLAI-IVVPKKFVKDTLIQ-CGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRY 120
G DL I + +P + DTL + C +K ++ +++I E E + H
Sbjct: 69 GNADLIIAVTLPDSY--DTLFKTCRKKQLRHIILIQDWDSLPAAELHTAE-TAIRKHHGN 125
Query: 121 GMRIIGPNCVGIMNTHADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFI 180
G+ I GI LN + G+ A ++ + A+ I K G S+ I
Sbjct: 126 GLNITACTTAGIQLPSLGLNISTQDGYAAGHTAILTGNAAVSRQIDNILNKLRQGTSRHI 185
Query: 181 SV-GNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAGK 239
S+ ++ + A+ + + K L+ + RK ++ T+ P+I +
Sbjct: 186 SLHPGISPITSADWLNRFGHSLHTKTAVLHHNPEEDQRKLFSAIRQFTRHTPLILHITCR 245
Query: 240 SESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAIM 299
+ RA + + L++ D++ + RA LP R+ I+
Sbjct: 246 TTETDRA-------------VLHCLARHCNFLISFNADDLEAALRAQLSDLPPLSRLDIL 292
Query: 300 TN 301
++
Sbjct: 293 SD 294
>emb|CAC12452.1| (AL445067) probable succinyl-CoA synthetase, alpha subunit
[Thermoplasma acidophilum]
Length = 294
Score = 69.9 bits (168), Expect = 6e-11
Identities = 74/262 (28%), Positives = 119/262 (45%), Gaps = 25/262 (9%)
Query: 22 KLGYEVFKNLKQYKGGNVYPVNVREEEVQGVKAYKSVKD-IPGEVDLAIIVVPKKFVKDT 80
K G +V + KGG + V SV + + E D +I VP +VKD
Sbjct: 38 KFGTKVVAGIAPGKGGTKF--------ADKVPIVNSVSEAMQYEPDATMISVPAPYVKDA 89
Query: 81 LIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHRYGMRIIGPNCVGI-MNTHADL 139
+ + G+K V I+T ++ E+V+ A G+ ++GPN GI + + +
Sbjct: 90 AYEAIDNGLKIVYILTE------HVPYQDTMEIVKEASLRGITVLGPNGPGITVPFESKI 143
Query: 140 NATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVG--NMADLDFAELMEYL 197
+ K+G+VA S+SG L IVY K +G S I +G + L F ++++
Sbjct: 144 GIMPNHIFKEGDVAIASRSGTLTYEIVYAVTKAGMGESTVIGLGGDRVVGLTFIDVLKMF 203
Query: 198 ADTEEDKAIALYIE-GIRNGRKFIEVAKRVTKKKPVIALKAGKSESGARAASSHTGSL-- 254
E+ K I L E G N + K+ KKK V+A AG+S + H G++
Sbjct: 204 EKDEKTKRIVLVGEIGGNNEELAADYIKKHVKKK-VVAYIAGRSAPPGK-RMGHAGAIIE 261
Query: 255 --AGSWKIYEAAFKQSGVLVAN 274
G+ + AF ++GV VA+
Sbjct: 262 RGVGTAESKLKAFAEAGVKVAD 283
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.135 0.375
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164372560
Number of Sequences: 2977
Number of extensions: 7050553
Number of successful extensions: 20309
Number of sequences better than 1.0e-10: 44
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 20118
Number of HSP's gapped (non-prelim): 47
length of query: 457
length of database: 189,106,746
effective HSP length: 60
effective length of query: 397
effective length of database: 153,197,526
effective search space: 60819417822
effective search space used: 60819417822
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)