BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0855 (iorA-1) DE:indolepyruvate ferredoxin oxidoreductase,
subunit alpha (iorA-1)
         (648 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75038 indolepyruvate ferredoxin oxidoreductase, chain alph...  1324  0.0
sp|O58495|IORA_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA ...  1271  0.0
sp|O07835|IORA_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA ...  1107  0.0
gi|11499084 indolepyruvate ferredoxin oxidoreductase, subunit al...   543  e-153
pir||G75085 indolepyruvate ferredoxin oxidoreductase, chain alph...   535  e-151
pir||D71055 probable indolepyruvate ferredoxin oxidoreductase al...   529  e-149
sp|O27880|IORA_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA ...   505  e-142
gb|AAK42250.1| Indolepyruvate ferredoxin oxidoreductase alpha su...   481  e-134
emb|CAC12141.1| (AL445066) indolepyruvate ferredoxin oxidoreduct...   423  e-117
pir||F75168 2-ketoglutarate ferredoxin oxidoreductase, chain alp...    92  2e-17
pir||F71046 probable ferredoxin oxidoreductase alpha subunit - P...    91  3e-17
pir||H69004 2-oxoglutarate--ferredoxin oxidoreductase (EC 1.2.7....    83  7e-15
sp|Q57724|KORA_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORA (2-KET...    83  7e-15
sp|O27112|KORA_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORA (2-KET...    83  9e-15
gi|11498080 2-ketoglutarate ferredoxin oxidoreductase, subunit a...    82  3e-14
pir||A53708 indolepyruvate synthase (EC 1.2.7.-) alpha subunit -...    79  2e-13
pir||A69194 2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) al...    77  5e-13
sp|O26800|VORB_METTH KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB...    77  5e-13
pir||C75168 2-ketoglutarate ferredoxin oxidoreductase, chain alp...    71  5e-11
pir||H72214 hypothetical protein TM1759 - Thermotoga maritima (s...    70  7e-11

>pir||E75038 indolepyruvate ferredoxin oxidoreductase, chain alpha  (iora-1)
           PAB0855 - Pyrococcus abyssi (strain Orsay)
           >gi|5458715|emb|CAB50202.1| (AJ248287) indolepyruvate
           ferredoxin oxidoreductase, subunit alpha (iorA-1)
           [Pyrococcus abyssi]
           Length = 648
           
 Score = 1324 bits (3390), Expect = 0.0
 Identities = 648/648 (100%), Positives = 648/648 (100%)

Query: 1   MVKVTDIVLWDKPGERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAG 60
           MVKVTDIVLWDKPGERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAG
Sbjct: 1   MVKVTDIVLWDKPGERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAG 60

Query: 61  VYMEYSTNEKVAFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVAD 120
           VYMEYSTNEKVAFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVAD
Sbjct: 61  VYMEYSTNEKVAFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVAD 120

Query: 121 DPSMWSSQNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSS 180
           DPSMWSSQNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSS
Sbjct: 121 DPSMWSSQNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSS 180

Query: 181 HMRGDVVLGELPQEIKEGKRKFGDFKKNPERYVDIPAFQRPKHKWLLETIEKFREEFNNS 240
           HMRGDVVLGELPQEIKEGKRKFGDFKKNPERYVDIPAFQRPKHKWLLETIEKFREEFNNS
Sbjct: 181 HMRGDVVLGELPQEIKEGKRKFGDFKKNPERYVDIPAFQRPKHKWLLETIEKFREEFNNS 240

Query: 241 PFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGL 300
           PFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGL
Sbjct: 241 PFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGL 300

Query: 301 ERVLIVEELEPVVEEQVKVWAFDKGINVEIHGKDLVPRVYEMTTRRAVEAIAKFLGLETP 360
           ERVLIVEELEPVVEEQVKVWAFDKGINVEIHGKDLVPRVYEMTTRRAVEAIAKFLGLETP
Sbjct: 301 ERVLIVEELEPVVEEQVKVWAFDKGINVEIHGKDLVPRVYEMTTRRAVEAIAKFLGLETP 360

Query: 361 INFEEIDEKYKKVQEIVPPRPPSLCPACPHRNTFFALRKAATPRAIYPSDIGCYTLGVLP 420
           INFEEIDEKYKKVQEIVPPRPPSLCPACPHRNTFFALRKAATPRAIYPSDIGCYTLGVLP
Sbjct: 361 INFEEIDEKYKKVQEIVPPRPPSLCPACPHRNTFFALRKAATPRAIYPSDIGCYTLGVLP 420

Query: 421 PLKTVDTTIAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPAL 480
           PLKTVDTTIAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPAL
Sbjct: 421 PLKTVDTTIAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPAL 480

Query: 481 ANAIYNRSNVLIVVLDNLVTAMTGDQPNPGTGETPHGPGKRILIEEVAKAMGADFVAVVD 540
           ANAIYNRSNVLIVVLDNLVTAMTGDQPNPGTGETPHGPGKRILIEEVAKAMGADFVAVVD
Sbjct: 481 ANAIYNRSNVLIVVLDNLVTAMTGDQPNPGTGETPHGPGKRILIEEVAKAMGADFVAVVD 540

Query: 541 PYDIKETYETFKKALEVEGVSVVVARRACALYRIGQLRRAGKQWPIYQVNEDKCTGCKIC 600
           PYDIKETYETFKKALEVEGVSVVVARRACALYRIGQLRRAGKQWPIYQVNEDKCTGCKIC
Sbjct: 541 PYDIKETYETFKKALEVEGVSVVVARRACALYRIGQLRRAGKQWPIYQVNEDKCTGCKIC 600

Query: 601 INAYGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVREGEL 648
           INAYGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVREGEL
Sbjct: 601 INAYGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVREGEL 648


>sp|O58495|IORA_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|7450338|pir||F71124 probable indolepyruvate
           ferredoxin oxidoreductase alpha subunit - Pyrococcus
           horikoshii >gi|3257173|dbj|BAA29856.1| (AP000003) 648aa
           long hypothetical indolepyruvate ferredoxin
           oxidoreductase alpha subunit [Pyrococcus horikoshii]
           Length = 648
           
 Score = 1271 bits (3254), Expect = 0.0
 Identities = 611/648 (94%), Positives = 634/648 (97%)

Query: 1   MVKVTDIVLWDKPGERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAG 60
           MVKVTDIVLWDKPGE+VLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMA VA +AG
Sbjct: 1   MVKVTDIVLWDKPGEKVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAMVAKKAG 60

Query: 61  VYMEYSTNEKVAFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVAD 120
           VYMEYSTNEKVAFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMG+NGGL+VVVAD
Sbjct: 61  VYMEYSTNEKVAFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGINGGLIVVVAD 120

Query: 121 DPSMWSSQNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSS 180
           DPSMWSSQNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSS
Sbjct: 121 DPSMWSSQNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSS 180

Query: 181 HMRGDVVLGELPQEIKEGKRKFGDFKKNPERYVDIPAFQRPKHKWLLETIEKFREEFNNS 240
           HMRGDVVLGELPQEIKEGKRKFG+FKKNPE+YVDIPAFQRPKH WLLETIEKFREEFN S
Sbjct: 181 HMRGDVVLGELPQEIKEGKRKFGNFKKNPEKYVDIPAFQRPKHPWLLETIEKFREEFNTS 240

Query: 241 PFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGL 300
           PFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLG+DNVK+LKLGTPFPVPYGLLEKFF GL
Sbjct: 241 PFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLGIDNVKILKLGTPFPVPYGLLEKFFNGL 300

Query: 301 ERVLIVEELEPVVEEQVKVWAFDKGINVEIHGKDLVPRVYEMTTRRAVEAIAKFLGLETP 360
           ERVLIVEELEPVVEEQVKVWAFD  IN+EIHGKDLVPRVYEMTTRRAVEA+AKFLG+ETP
Sbjct: 301 ERVLIVEELEPVVEEQVKVWAFDNNINIEIHGKDLVPRVYEMTTRRAVEAVAKFLGVETP 360

Query: 361 INFEEIDEKYKKVQEIVPPRPPSLCPACPHRNTFFALRKAATPRAIYPSDIGCYTLGVLP 420
           INF+EIDEKYKKVQE+VPPRPPSLCPACPHRNTFFA+RKAATPRAI+PSDIGCYTLGVLP
Sbjct: 361 INFQEIDEKYKKVQEMVPPRPPSLCPACPHRNTFFAIRKAATPRAIFPSDIGCYTLGVLP 420

Query: 421 PLKTVDTTIAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPAL 480
           PLKTVDTTIAMGGSIGVAHGLSIALNG++ EEQRKTGK KKII ATIGDSTFFHTGLPAL
Sbjct: 421 PLKTVDTTIAMGGSIGVAHGLSIALNGALGEEQRKTGKEKKIIVATIGDSTFFHTGLPAL 480

Query: 481 ANAIYNRSNVLIVVLDNLVTAMTGDQPNPGTGETPHGPGKRILIEEVAKAMGADFVAVVD 540
           ANAIYNRSNVLIVV+DN+VTAMTGDQPNPGTGETPHGPGKRILIEEVA+AMGADFVAVVD
Sbjct: 481 ANAIYNRSNVLIVVMDNMVTAMTGDQPNPGTGETPHGPGKRILIEEVARAMGADFVAVVD 540

Query: 541 PYDIKETYETFKKALEVEGVSVVVARRACALYRIGQLRRAGKQWPIYQVNEDKCTGCKIC 600
           PYDIKETYET KKALEVEGVSVVV+RRACALYRIGQLRR GKQWPIYQVNE+KCTGCKIC
Sbjct: 541 PYDIKETYETIKKALEVEGVSVVVSRRACALYRIGQLRREGKQWPIYQVNEEKCTGCKIC 600

Query: 601 INAYGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVREGEL 648
           INAYGCPAIYWD EKKKA+VDPLMCWGCGGCAQVCPF AFEKVREGEL
Sbjct: 601 INAYGCPAIYWDAEKKKARVDPLMCWGCGGCAQVCPFGAFEKVREGEL 648


>sp|O07835|IORA_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|2209070|dbj|BAA20528.1| (D86221) indolepyruvate
           ferredoxin oxidoreductase alpha subunit [Pyrococcus sp.]
           Length = 647
           
 Score = 1107 bits (2832), Expect = 0.0
 Identities = 530/647 (81%), Positives = 578/647 (88%)

Query: 1   MVKVTDIVLWDKPGERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAG 60
           M KVTDIVLWDKPGERVLLLGN AI RGALE NI V+AAYPGTPSSE+T     VA +AG
Sbjct: 1   MAKVTDIVLWDKPGERVLLLGNHAIERGALEANIAVFAAYPGTPSSELTIRWQTVAKKAG 60

Query: 61  VYMEYSTNEKVAFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVAD 120
           VYMEYSTNEKVAFETAL+A+W+GLRAMTAMKHVGLNVA DSF++   MGV GG V++VAD
Sbjct: 61  VYMEYSTNEKVAFETALAAAWSGLRAMTAMKHVGLNVAADSFLSSVGMGVEGGFVIMVAD 120

Query: 121 DPSMWSSQNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSS 180
           DPSMWSSQNEQDTR  AKFAN+PVLEPSS  EAK+M KYAFE+SEK+   VILRTTTRSS
Sbjct: 121 DPSMWSSQNEQDTRVYAKFANVPVLEPSSPHEAKEMTKYAFELSEKFKHFVILRTTTRSS 180

Query: 181 HMRGDVVLGELPQEIKEGKRKFGDFKKNPERYVDIPAFQRPKHKWLLETIEKFREEFNNS 240
           H RGDVVLGELP+EIK GKRKFG FKK+P R+VD+PA  R  H  +LE IEK REE NN 
Sbjct: 181 HARGDVVLGELPEEIKTGKRKFGKFKKDPTRFVDVPAHARKFHPLILEKIEKIREELNNC 240

Query: 241 PFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGL 300
           PFNWIEG EDAKVGIIAPGLSYAYVKEALAWLGV++VK+LKLGTPFPVPYGLL KFF GL
Sbjct: 241 PFNWIEGKEDAKVGIIAPGLSYAYVKEALAWLGVEDVKILKLGTPFPVPYGLLGKFFDGL 300

Query: 301 ERVLIVEELEPVVEEQVKVWAFDKGINVEIHGKDLVPRVYEMTTRRAVEAIAKFLGLETP 360
           E+VLIVEELE VVEEQVK WA+DKG+ + IHGKDLVPRVYEMTTRRAVEAIAKFLGLETP
Sbjct: 301 EKVLIVEELERVVEEQVKTWAYDKGLRIPIHGKDLVPRVYEMTTRRAVEAIAKFLGLETP 360

Query: 361 INFEEIDEKYKKVQEIVPPRPPSLCPACPHRNTFFALRKAATPRAIYPSDIGCYTLGVLP 420
           INF EIDEKY+KV +IVPPRPPSLCPACPHRN+FFA+RKAA P+AIYPSDIGCYTLGVLP
Sbjct: 361 INFAEIDEKYEKVSQIVPPRPPSLCPACPHRNSFFAIRKAAGPKAIYPSDIGCYTLGVLP 420

Query: 421 PLKTVDTTIAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPAL 480
           PL+TVDTT+AMG SIG+ HGLSIA+NGS+AEE+ K GK K+II ATIGDSTF+HTGLPAL
Sbjct: 421 PLRTVDTTVAMGASIGIGHGLSIAMNGSLAEEEHKEGKEKQIIVATIGDSTFYHTGLPAL 480

Query: 481 ANAIYNRSNVLIVVLDNLVTAMTGDQPNPGTGETPHGPGKRILIEEVAKAMGADFVAVVD 540
           ANAIYNRSNVLIVVLDNLVTAMTGDQPNPGTG+TPHG GKRI IE+VAKAMGADFVAVVD
Sbjct: 481 ANAIYNRSNVLIVVLDNLVTAMTGDQPNPGTGQTPHGMGKRIPIEDVAKAMGADFVAVVD 540

Query: 541 PYDIKETYETFKKALEVEGVSVVVARRACALYRIGQLRRAGKQWPIYQVNEDKCTGCKIC 600
           PYDIK TYET KKALEVEGVSVVV+R+ CALY+IGQ+RR G +WPIY V EDKCTGCKIC
Sbjct: 541 PYDIKATYETIKKALEVEGVSVVVSRQVCALYKIGQMRRRGMKWPIYHVVEDKCTGCKIC 600

Query: 601 INAYGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVREGE 647
           I  YGCPAIYWDPE KKAKVDP MCWGCGGCAQVCPFDAFE ++EGE
Sbjct: 601 IKTYGCPAIYWDPETKKAKVDPTMCWGCGGCAQVCPFDAFEPMKEGE 647


>gi|11499084 indolepyruvate ferredoxin oxidoreductase, subunit alpha (iorA)
           [Archaeoglobus fulgidus]
           >gi|6685558|sp|O28783|IORA_ARCFU INDOLEPYRUVATE
           OXIDOREDUCTASE SUBUNIT IORA (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|7450334|pir||H69435 indolepyruvate ferredoxin
           oxidoreductase, subunit alpha  (iorA) homolog -
           Archaeoglobus fulgidus >gi|2649079|gb|AAB89760.1|
           (AE001000) indolepyruvate ferredoxin oxidoreductase,
           subunit alpha (iorA) [Archaeoglobus fulgidus]
           Length = 623
           
 Score =  543 bits (1384), Expect = e-153
 Identities = 301/646 (46%), Positives = 406/646 (62%), Gaps = 38/646 (5%)

Query: 8   VLWDKPGERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMA----AVASRAGVYM 63
           V+ D  GE+V LLGN+AI RGA+E  I V+AAYPGTPSSEI DT++     +  +   YM
Sbjct: 5   VVRDAEGEKVFLLGNEAIARGAIEAGIDVFAAYPGTPSSEIADTLSDACRLLRGKMDFYM 64

Query: 64  EYSTNEKVAFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPS 123
           EYS NEKVAFE A+ AS AG RAM  MKHVG+NVA D   + +Y+G  GG V+V ADDPS
Sbjct: 65  EYSANEKVAFEVAVGASLAGKRAMATMKHVGVNVAADPLFSFAYVGARGGFVLVTADDPS 124

Query: 124 MWSSQNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMR 183
           M SSQNEQD R   K A +PV+EPSSVQEAKD  K  F++SEK+G  +ILR+ TR SH  
Sbjct: 125 MHSSQNEQDNRWYGKAAKLPVVEPSSVQEAKDYAKLCFDLSEKFGLPMILRSYTRLSHAS 184

Query: 184 GDVVLGELPQEIKEGKRKFGDFKKNPERYVDIPAFQRPKHKWLLETIEKFREEFNNSPFN 243
           G V LG++P+  KE  R   +++++PE  V +PA  R     LLE +EK    FN+S  N
Sbjct: 185 GVVELGKIPE--KEFSRV--EWERHPETDVVLPAHARKLKPILLEKLEKIERYFNSSEMN 240

Query: 244 WIEGPEDAKVGIIAPGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGLERV 303
           W++   D  VGIIA GLSYAY KEAL  L + N+ VLKL +  P+P  L+E F   +++V
Sbjct: 241 WVD-EGDGDVGIIACGLSYAYTKEALENLNL-NLPVLKLSSMHPLPERLIENFVSQMKKV 298

Query: 304 LIVEELEPVVEEQVKVWAFDKGINVEIHGK--DLVPRVYEMTTRRAVEAIAKFLGLETPI 361
           ++VEE++P VE  V+          E++GK    +P  YE    R    IAK LG++   
Sbjct: 299 IVVEEVDPFVELHVRAMGL-----AEVYGKMNGYMPMNYEYNVGRVETGIAKALGIKPSR 353

Query: 362 NFEEIDEKYKKVQEIVPPRPPSLCPACPHRNTFFALRKAATP--RAIYPSDIGCYTLGVL 419
           ++E I  + +K+    PPRPP LCP CPH  +F+A+R+       A  PSDIGCYTLG+ 
Sbjct: 354 DYEGIVAESQKLAAKAPPRPPVLCPGCPHSASFYAIRRVVDELGDAALPSDIGCYTLGIN 413

Query: 420 PPLKTVDTTIAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPA 479
            PL+ VD TI MG S+GV++GL+  LN                I ATIGDSTF H G+P 
Sbjct: 414 KPLEGVDITICMGASVGVSNGLAHVLNNK--------------IIATIGDSTFIHAGIPP 459

Query: 480 LANAIYNRSNVLIVVLDNLVTAMTGDQPNPGTGETPHG-PGKRILIEEVAKAMGADFVAV 538
           L NA+YN ++ ++V+LDN  T MTG QP+PGTG    G  GK + IE++ +  G +FV V
Sbjct: 460 LINAVYNHADFVLVILDNSTTGMTGHQPHPGTGFRGCGEAGKAVRIEDIVRGCGVEFVEV 519

Query: 539 VDPYDIKETYETFKKALEVEGVSVVVARRACALYRIGQLRRAGKQWPIYQVNEDKCTGCK 598
           V+PY++++  +  ++AL  +GV+VV+AR+ CA+      RR GK    Y+V ED CT C 
Sbjct: 520 VNPYNVRKMVDVLRRALNHDGVAVVIARQPCAILWSRARRREGK-IVTYKVTED-CTLCM 577

Query: 599 ICINAYGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVR 644
            C+N + CPA+ +D E  K  +D  +C GC  CA++CP  A +  +
Sbjct: 578 ECVNTFACPALIFDGE--KVSIDQSLCVGCAVCAKICPNRAIKPAK 621


>pir||G75085 indolepyruvate ferredoxin oxidoreductase, chain alpha  (iora-2)
           PAB0718 - Pyrococcus abyssi (strain Orsay)
           >gi|5458500|emb|CAB49988.1| (AJ248286) indolepyruvate
           ferredoxin oxidoreductase, subunit alpha (iorA-2)
           [Pyrococcus abyssi]
           Length = 613
           
 Score =  535 bits (1363), Expect = e-151
 Identities = 300/640 (46%), Positives = 404/640 (62%), Gaps = 45/640 (7%)

Query: 18  LLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFETAL 77
           LL+GN+AI  GALE  I     YPGTPS+E+ +T+A +  +  V+ E++ NEKVA E A 
Sbjct: 4   LLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARL--KPEVFAEWAPNEKVALEEAA 61

Query: 78  SASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSMWSSQNEQDTRAIA 137
             S+AGLR++  MK VGLNVA D  M+++Y GV GGLV++VADDP   +SQ EQD R   
Sbjct: 62  GVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYYG 121

Query: 138 KFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVVLGELPQEIKE 197
           K A +PVLEP   QEA D++KYA+E+SEKY   VI RTTTR +H   DV +G    E  E
Sbjct: 122 KIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVG----EFVE 177

Query: 198 GKRKFGDFKKNPERYVDIP-AFQRPKHKWLLETIEKFREEFNNSPFNWIEGPEDAKVGII 256
             RK   FKK+ ERYV       R +HKWL ETI K  EEFN+ PFNW+EG  + K+GII
Sbjct: 178 LNRK-PVFKKDIERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEG--EGKLGII 234

Query: 257 APGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGLERVLIVEELEPVVEEQ 316
             G  Y YVKE L  +G D  K+LKL TP P+P  L+  F + +E+V+++EE  P +EE+
Sbjct: 235 VEGAPYNYVKEILPSIGED-FKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEE 293

Query: 317 VKVWAFDKGINVEIHGK--DLVPRVYEMTTRRAVEAIAKFLGLETPINFEEIDEKYKKVQ 374
           +KV A+++G++V I+GK   L+P   E+T R    AI KFLG E       I ++  + +
Sbjct: 294 IKVVAYEEGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEA--EEVSIPQEVLEAE 351

Query: 375 EIVPPRPPSLCPACPHRNTF----FALRKAATPRAIYP--SDIGCYTLGVLPPLKTVDTT 428
           ++ P RPP +CP CPHR ++     ALR+    R   P   DIGCY L +LPPL+ + T 
Sbjct: 352 KLAPKRPPGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTE 411

Query: 429 IAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPALANAIYNRS 488
             MG SI +A+G S+ +N              K I ATIGDSTFFH G+  L +A+Y   
Sbjct: 412 FVMGASISLANGQSVVMN--------------KKIVATIGDSTFFHNGIQPLIDAVYKDL 457

Query: 489 NVLIVVLDNLVTAMTGDQPNPGTGETPHG-PGKRILIEEVAKAMGADFVAVVDPYDIKET 547
           +VL+++LDN  TAMTG QP+PGTG +  G   + I IE + +A+G  +V  VDPYD+K T
Sbjct: 458 DVLVIILDNRTTAMTGHQPHPGTGGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKAT 517

Query: 548 YETFKKALEVEGVSVVVARRACAL--YRIGQLRRAGKQWPIYQVNEDKCTGCKICINAYG 605
            E  K+A++V+G +V++A+R C +   R G+ R      PI  + E+KCTGCK CI   G
Sbjct: 518 KEAIKEAMQVKGPAVIIAKRECVIPVIRRGETREP----PI--IIEEKCTGCKACILLSG 571

Query: 606 CPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVRE 645
           C A+ +DPE +K K+D L+C GCG C Q+CPFDA  K RE
Sbjct: 572 CQALIYDPETRKVKIDELICTGCGICNQLCPFDAI-KFRE 610


>pir||D71055 probable indolepyruvate ferredoxin oxidoreductase alpha subunit -
           Pyrococcus horikoshii >gi|3257555|dbj|BAA30238.1|
           (AP000005) 618aa long hypothetical indolepyruvate
           ferredoxin oxidoreductase alpha subunit [Pyrococcus
           horikoshii]
           Length = 618
           
 Score =  529 bits (1347), Expect = e-149
 Identities = 295/642 (45%), Positives = 403/642 (61%), Gaps = 49/642 (7%)

Query: 18  LLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFETAL 77
           LL+GN+AI  GALE  +     YPGTPS+E+ +T+A +  +  V+ E++ NEKVA E A 
Sbjct: 9   LLMGNEAIAYGALEAGVSFATGYPGTPSTEVIETIARL--KPEVFAEWAPNEKVALEEAA 66

Query: 78  SASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSMWSSQNEQDTRAIA 137
            AS+AG+R++  MK VGLNVA D  M+++Y GV GGLVV+VADDP   +SQ EQD R   
Sbjct: 67  GASYAGIRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVVLVADDPGPHTSQTEQDDRYYG 126

Query: 138 KFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVVLGELPQEIKE 197
           K + +PVLEP   QEA D++KYA+E+SEKY   +I RTTTR +H   DV +GE      +
Sbjct: 127 KISLLPVLEPYDPQEAHDLIKYAYELSEKYKVPIIFRTTTRVNHTTADVEVGEF-----K 181

Query: 198 GKRKFGDFKKNPERYVDIP-AFQRPKHKWLLETIEKFREEFNNSPFNWIEGPEDAKVGII 256
              +   FKK+ ERYV       R +HKWL ET++K  EEFNN  +NWIEG  D K+GII
Sbjct: 182 DLNRIPKFKKDIERYVRASMEGNRKRHKWLNETLKKIEEEFNNLDYNWIEG--DGKIGII 239

Query: 257 APGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGLERVLIVEELEPVVEEQ 316
             G  Y YVKE L  +  D  K+LKL TP P+P  ++  F + +E+ L++EE  P +EE+
Sbjct: 240 VEGAPYNYVKEVLPSIEGD-FKILKLSTPHPLPRKIVINFLKSVEKALVIEEGAPFLEEE 298

Query: 317 VKVWAFDKGINVEIHGK--DLVPRVYEMTTRRAVEAIAKFLGLETPINFEEID--EKYKK 372
           +KV A+++G+ V I+GK    +P   E+T R    AI K LG E     EE+   ++ ++
Sbjct: 299 IKVVAYEEGLRVPIYGKRTGYLPLEGELTPRLVKNAILKLLGKEG----EEVSLPKEVEE 354

Query: 373 VQEIVPPRPPSLCPACPHRNTF----FALRKAATPRAIYP--SDIGCYTLGVLPPLKTVD 426
            + + P RPP +CP CPHR ++     ALR+    +   P   DIGCY L +LPPL+ + 
Sbjct: 355 AERLAPKRPPVMCPGCPHRGSYRALLDALRELGYGKFDIPIHGDIGCYALSLLPPLEAIW 414

Query: 427 TTIAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPALANAIYN 486
           T   MG SI +A+G S+ +             GKKI+ ATIGDSTFFH G+  L +A+Y 
Sbjct: 415 TEFVMGASISLANGQSVVM-------------GKKIV-ATIGDSTFFHNGIQPLIDAVYK 460

Query: 487 RSNVLIVVLDNLVTAMTGDQPNPGTGETPHG-PGKRILIEEVAKAMGADFVAVVDPYDIK 545
             +VL+++LDN  TAMTG QP+PGTG +  G   + I IE + K +G  +V  VDPYD+K
Sbjct: 461 DLDVLVIILDNRTTAMTGHQPHPGTGGSETGRKFREIDIEALVKGIGVKYVKTVDPYDLK 520

Query: 546 ETYETFKKALEVEGVSVVVARRACAL--YRIGQLRRAGKQWPIYQVNEDKCTGCKICINA 603
            T E  K+A++V+G +V++ARR C +   R G+ R      PI  V EDKCTGCK CI  
Sbjct: 521 ATKEAIKEAMKVKGPAVIIARRECVIPVIRRGETREP----PI--VIEDKCTGCKACILL 574

Query: 604 YGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVRE 645
            GCPA+ +DPE +K ++D L+C GCG C Q+CPFDA  K RE
Sbjct: 575 SGCPALIYDPETRKVRIDELICTGCGICNQLCPFDAI-KFRE 615


>sp|O27880|IORA_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|7450335|pir||G69114 indolepyruvate oxidoreductase,
           alpha subunit - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622988|gb|AAB86318.1| (AE000938)
           indolepyruvate oxidoreductase, alpha subunit 
           [Methanobacterium thermoautotrophicum]
           Length = 618
           
 Score =  505 bits (1287), Expect = e-142
 Identities = 281/649 (43%), Positives = 402/649 (61%), Gaps = 46/649 (7%)

Query: 8   VLWDKPGERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYST 67
           +L  + G+++ LLGN+A VR A+E  +GV + YPGTPSSEI + ++ +A RAG+Y E+S 
Sbjct: 6   ILNAREGDKLFLLGNEATVRAAIESGVGVASTYPGTPSSEIGNVLSGIAKRAGMYFEFSV 65

Query: 68  NEKVAFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSMWSS 127
           NEKVA E A +A+ +G+R+ T MKHVGLNVA DSFM+ +Y GV  G+VV+ ADDPSM+SS
Sbjct: 66  NEKVALEVAAAAAASGVRSFTFMKHVGLNVASDSFMSTAYTGVRAGMVVLTADDPSMFSS 125

Query: 128 QNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVV 187
           QNEQD R  A+ A +P+LEPS  QE  + + +AFE+SE YG  V+LRTTTR SHMRG V 
Sbjct: 126 QNEQDNRHYARLACLPLLEPSDPQEVLEFMNHAFELSEDYGLPVLLRTTTRVSHMRGVVE 185

Query: 188 LGELPQEIKEGKRKFGDFKKNPERYVDIPAFQRPKHKWLLETIEKFREEFNNSPFNWI-E 246
           +G   +E  E     G F+K+PER+V +PA  R  H+ L++ +++ R   + S  N +  
Sbjct: 186 VGSRMREPSE-----GFFRKDPERFVPVPATARVMHRKLVDKMKELRIRADESELNRVFN 240

Query: 247 GPEDAKVGIIAPGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGLERVLIV 306
           G  D+++G++A G ++ YV +AL  LG++ + VLKLG  +P P GL+E+F  GL+RVL+V
Sbjct: 241 GGSDSELGVVASGGAFNYVYDALESLGLE-LPVLKLGFTYPFPAGLVEEFLSGLKRVLVV 299

Query: 307 EELEPVVEEQVKVWAFDKGINVEIHGK--DLVPRVYEMTTRRAVEAIAKFLGLETPINFE 364
           EE++P++E +V   A    +++++HGK    +P +YE       +AI+   G  +     
Sbjct: 300 EEVDPIMEREVLAVAGSARLDLDVHGKLDGTLPEIYEYNEDILRKAISGLTGAPSVEREC 359

Query: 365 EIDEKYKKVQEIVPPRPPSLCPACPHRNTFFALRKAAT------PRAIYPSDIGCYTLGV 418
           ++ +        +P RPPSLCP CPHR  ++A+R+AA          I+P+DIGCYTLG+
Sbjct: 360 DVPD--------IPERPPSLCPGCPHRAVYYAVRRAADELELSGDEIIFPTDIGCYTLGI 411

Query: 419 LPPLKTVDTTIAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLP 478
            PP    D  ++MG SIG + G S A        QR        I + IGDSTFFH G+P
Sbjct: 412 EPPYSAADYLLSMGSSIGTSCGFSAATT------QR--------IVSFIGDSTFFHAGIP 457

Query: 479 ALANAIYNRSNVLIVVLDNLVTAMTGDQPNPGTGETPHG-PGKRILIEEVAKAMGADFVA 537
            L NA++N+   ++VVLDN  TAMTG QP+PG      G     I IEE+ +A G +FV 
Sbjct: 458 PLINAVHNKQRFVLVVLDNRTTAMTGGQPHPGLPVDGMGDEAPEISIEEIVRASGVEFVE 517

Query: 538 VVDPYDIKETYETFKKALEVEGVSVVVARRACALYRIGQLRRAGKQWPIYQVNEDKCTGC 597
            V+P +IK T ET K+ALE E V+VV+++  C L   G +R  G+      V+ +KC  C
Sbjct: 518 TVNPMNIKRTSETVKRALEHESVAVVISKYPCML-SSGAVR--GRP---MAVDGEKCDLC 571

Query: 598 KICINAYGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVREG 646
             CI    CPA+     + +  +DPL C GC  C Q+CP  A +   +G
Sbjct: 572 LECIRDLACPAMV--TREGEVFIDPLKCRGCSVCLQICPAGAIKPEGKG 618


>gb|AAK42250.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus]
           Length = 612
           
 Score =  481 bits (1225), Expect = e-134
 Identities = 286/638 (44%), Positives = 375/638 (57%), Gaps = 68/638 (10%)

Query: 18  LLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFETAL 77
           L+LGN+AI  GAL   + V A YPGTPS+EI +T+        +Y E+STNEKVAFETA 
Sbjct: 10  LILGNEAIAFGALSAGVSVAAGYPGTPSTEIIETLMKFGK---IYAEWSTNEKVAFETAY 66

Query: 78  SASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSMWSSQNEQDTRAIA 137
            A+  G  A+T MKHVGLNVA D  ++ SY GV G LV+V ADDPSMWSSQNEQD R   
Sbjct: 67  GAAINGAFALTTMKHVGLNVAADPLISSSYTGVEGALVIVSADDPSMWSSQNEQDNRYYG 126

Query: 138 KFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVVLGELPQEIKE 197
             A IPV+EP   Q A D+   AF++S K    VI R+TTR  H+RG       P E+K 
Sbjct: 127 LHALIPVVEPYDPQSAHDLTIEAFKLSNKVKHPVIFRSTTRIGHIRG-------PVELKP 179

Query: 198 GKRK-FGDFKKNPERYVDIPAFQRPKHKWLLETIEKFREEFNNSPFNWIEG-----PEDA 251
             R   G   KNP+RYV +P   R      L+  E+  EE        +EG       D+
Sbjct: 180 PSRPVMGKVIKNPKRYVLVPENARRDRVEQLKRWERIEEE--------VEGLNELIDNDS 231

Query: 252 KVGIIAPGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGLERVLIVEELEP 311
           +  IIA G+S+ YV +A+  L +    +L+L TP P+P  L+ K     +RVLIVEE EP
Sbjct: 232 ENLIIASGISFGYVIDAIKELEI-KANILRLTTPVPIPKRLILKAVSNSKRVLIVEEGEP 290

Query: 312 VVEEQVKVWAFDKGINVEIHGKDLVPRVYEMTTRRAVEAIAKFLGLETPINFEEIDEKYK 371
           +VE QVK   +D+G+ VE+HGKDLV RV EMT  +   A +KF GL       +I   Y 
Sbjct: 291 IVEYQVKDLLYDQGVRVELHGKDLVSRVGEMTLDKVYYAFSKFFGL-------DIVTDYL 343

Query: 372 KVQEIVPPRPPSLCPACPHRNTFFALRKAATPRAIYPS------DIGCYTLGVLPPLKTV 425
           +V + +PPRPP+LCP CPHR++F  L+KA T  +  P+      DIGCYTLG+LPP    
Sbjct: 344 EVPQDIPPRPPALCPGCPHRSSFIDLKKAITMASFKPNETFISGDIGCYTLGLLPPFDAQ 403

Query: 426 DTTIAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPALANAIY 485
           D++  MG SIG+A+G+            R TG    I  A IGDSTFFH+G+ ALANA+Y
Sbjct: 404 DSSTDMGSSIGIANGV-----------YRATG---NIPIAVIGDSTFFHSGISALANAVY 449

Query: 486 NRSNVLIVVLDNLVTAMTGDQPNPGTGETPHGPGKRILIEEVAKAMGADFVAVVDPYDIK 545
           N++ +L++VLDN  TAMTG QP+         P K I I EVAK +G  +V  VDP+D+ 
Sbjct: 450 NQTPMLVLVLDNRSTAMTGQQPS---------PSKEIDIGEVAKGLGVKYVRYVDPFDVN 500

Query: 546 ETYETFKKAL----EVEGVSVVVARRACALYRIGQLRRAGKQWPIYQVNEDKCTGCKICI 601
            +      AL    + +  +VV+A+RACAL  +  +  +    P   V+ +KCTGC IC 
Sbjct: 501 SSIRELSNALKWVKDNKQPAVVIAKRACALLVMDNVEES--NLPKAIVDLEKCTGCSICY 558

Query: 602 NAYGCPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDA 639
           + + CPAI      KKA++D   C GCG C  +CPF A
Sbjct: 559 DYFTCPAII-PRNDKKAEIDNYTCIGCGACVPICPFKA 595


>emb|CAC12141.1| (AL445066) indolepyruvate ferredoxin oxidoreductase, alpha subunit
           related protein [Thermoplasma acidophilum]
           Length = 605
           
 Score =  423 bits (1076), Expect = e-117
 Identities = 251/632 (39%), Positives = 354/632 (55%), Gaps = 62/632 (9%)

Query: 19  LLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFETALS 78
           ++GN+AI   A+   + V A YPGTPS+EI + +        VY+E+S NEK+AFETA  
Sbjct: 8   MIGNEAIAAAAVHAGVSVAAGYPGTPSTEIIENVRKFGP--DVYVEWSVNEKIAFETAYG 65

Query: 79  ASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSMWSSQNEQDTRAIAK 138
           A+ +G   + A+KHVGLNVA D   + SY G+ G LV+V ADD SMWSSQNEQD R    
Sbjct: 66  AAMSGGTGLVAVKHVGLNVASDPMFSSSYTGITGSLVIVSADDSSMWSSQNEQDNRFYGL 125

Query: 139 FANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVVLGELPQEIKEG 198
            A IPVLEP  VQ A D+   AFE+S  +   VILRTTTR  H+R +V+  +  + ++  
Sbjct: 126 HALIPVLEPYDVQSAYDLTLKAFEVSRLFHHPVILRTTTRIGHVRSNVIYEDHHEPLR-- 183

Query: 199 KRKFGDFKKNPERYVDIPAFQRPKHKWLLETIEKFREEFNNSPFNWIEGPEDAKVGIIAP 258
               G   K+P  YV  P   R   K   + +E++RE  +         P+     II  
Sbjct: 184 ----GKVIKDPNTYVLAPENARSDRK---KQLERWREISDYLSSLCSYEPDGGDSIIITG 236

Query: 259 GLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGLERVLIVEELEPVVEEQVK 318
           G+SY+Y+KEAL   G+ +  VL+L    P+P   +     G+ RVL+VEE +PV+E QV 
Sbjct: 237 GISYSYLKEALEDAGI-HTNVLRLDATVPIPESAILNHINGIRRVLVVEENDPVMEMQVA 295

Query: 319 VWAFDKGINVEIHGKDLVPRVYEMTTRRAVEAIAKFLGLETPINFEEIDEKYKKVQEIVP 378
                 G  VE HGKDL+P   EMT  +    +  F G++   ++ +         E + 
Sbjct: 296 DILLRNGKAVEFHGKDLIPIEGEMTFEKLKAGLFAFFGMKYSGSYFQ--------DEPLT 347

Query: 379 PRPPSLCPACPHRNTFFALRK----AATPRAIYPSDIGCYTLGVLPPLKTVDTTIAMGGS 434
           PRPP+LCP CPHR++FF ++K     +   + +  DIGCYTLG LPP +  D+   MG S
Sbjct: 348 PRPPALCPGCPHRSSFFDIKKGLSRVSMQNSFFSGDIGCYTLGALPPFREQDSATNMGSS 407

Query: 435 IGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPALANAIYNRSNVLIVV 494
           +G+++G+            R T    ++  A IGDSTFFH+G+  +ANA+YN +  +IVV
Sbjct: 408 LGISNGVF-----------RST---DQVPVAVIGDSTFFHSGIEGVANAVYNNTAEIIVV 453

Query: 495 LDNLVTAMTGDQPNPGTGETPHGPGKRILIEEVAKAMGADFVAVVDPYD-------IKET 547
           LDN  TAMTG QP+P T          I I  V +AMG ++V   DP+D       +++ 
Sbjct: 454 LDNRSTAMTGQQPSPSTA---------IDIGNVCRAMGIEYVETFDPFDVDAGEKAVQQA 504

Query: 548 YETFKKALEVEGVSVVVARRACALYRIGQLRRAGKQWPIYQVNEDKCTGCKICINAYGCP 607
            E  KK L+    +V++A+RACAL     L +   + P   V+ ++CTGC IC + + CP
Sbjct: 505 AEYVKKTLK---PAVIIAKRACAL---EVLEKVDSETPKAYVDSNRCTGCTICYDFFTCP 558

Query: 608 AIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDA 639
           +I      KKA +D   C GCG C +VCPF+A
Sbjct: 559 SIL-PLSNKKATIDD-SCIGCGACVEVCPFNA 588


>pir||F75168 2-ketoglutarate ferredoxin oxidoreductase, chain alpha  (kora-2)
           PAB0346 - Pyrococcus abyssi (strain Orsay)
           >gi|5457939|emb|CAB49429.1| (AJ248284) 2-ketoglutarate
           ferredoxin oxidoreductase, subunit alpha (korA-2)
           [Pyrococcus abyssi]
           Length = 385
           
 Score = 92.1 bits (225), Expect = 2e-17
 Identities = 91/336 (27%), Positives = 143/336 (42%), Gaps = 45/336 (13%)

Query: 14  GERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAF 73
           G+   + G++AI R A+      YA YP TP+SEI + MA         +    +E  + 
Sbjct: 8   GKADFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASI 67

Query: 74  ETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVV--------ADDPSMW 125
              + ASWAG +AMTA    G ++  ++   + Y  +    +VVV           P++ 
Sbjct: 68  AAIIGASWAGAKAMTATSGPGFSLMQEN---IGYAVMTETPIVVVDVQRGGPSTGQPTLP 124

Query: 126 SSQN-EQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRG 184
           S  +  Q         ++ VL PS+VQEA D    AF ++EKY   VIL +     HMR 
Sbjct: 125 SQGDIMQSIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLAEKYRTPVILLSDAEVGHMRE 184

Query: 185 DVVLGE----------LPQEIKEGKRKFGD-----------FKKNPERYVD--------- 214
            V + E          LPQ  +E K  FGD           F +    YV          
Sbjct: 185 RVYIPEPDEIEIVNRKLPQNEEEAKLPFGDPHGDFVPPMPIFGRGYRTYVTGLTHDERGR 244

Query: 215 IPAFQRPKHKWLLETIEKFREEFNNSPFNW-IEGPEDAKVGIIAPGLSYAYVKEALAWLG 273
               +R  H+ ++  I +  E      F++     +DA+V I+  G+       A+  L 
Sbjct: 245 PRTVEREVHERVIRRIVEKIERNKKDIFDYEARELDDAEVAIVTTGIVARSALRAIKELR 304

Query: 274 VDNVK--VLKLGTPFPVPYGLLEKFFQGLERVLIVE 307
              +K  +LK+ T +P  + L+EK    +ER+ + E
Sbjct: 305 ELGIKAGLLKINTIWPFDFELIEKIAGKVERIYVPE 340


>pir||F71046 probable ferredoxin oxidoreductase alpha subunit - Pyrococcus
           horikoshii >gi|3258091|dbj|BAA30774.1| (AP000006) 385aa
           long hypothetical ferredoxin oxidoreductase alpha
           subunit [Pyrococcus horikoshii]
           Length = 385
           
 Score = 91.3 bits (223), Expect = 3e-17
 Identities = 91/336 (27%), Positives = 144/336 (42%), Gaps = 45/336 (13%)

Query: 14  GERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAF 73
           G+   + G++AI R A+      YA YP TP+SEI + MA         +    +E  + 
Sbjct: 8   GKADFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLIDGVVIQMEDEIGSI 67

Query: 74  ETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVV--------ADDPSMW 125
              + ASWAG++AMTA    G ++  ++   + Y  +    +VVV           P++ 
Sbjct: 68  AAVIGASWAGVKAMTATSGPGFSLMQEN---IGYAVMTETPIVVVNVQRGGPSTGQPTLP 124

Query: 126 SSQN-EQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRG 184
           S  +  Q          + VL PS+VQEA D    AF ++EKY   VIL +     HMR 
Sbjct: 125 SQGDIMQSIWGTHGDHTLIVLSPSTVQEAFDFTIRAFNLAEKYRTPVILLSDAEVGHMRE 184

Query: 185 DVVLGE----------LPQEIKEGKRKFGD-----------FKKNPERYVD--------- 214
            V + E          LP   +E K  FGD           F K    YV          
Sbjct: 185 RVYIPEPDEIEIVNRKLPGSEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGR 244

Query: 215 IPAFQRPKHKWLLETIEKFREEFNNSPFNW-IEGPEDAKVGIIAPGLSYAYVKEALAWLG 273
               +R  H+ L+  I +  E+     F++     +DA++ I+  G+       A+  L 
Sbjct: 245 PRTVEREVHERLIRRIFEKIEKNKKDIFDYEARELDDAEIAIVTTGIVARSALRAIKELR 304

Query: 274 VDNVK--VLKLGTPFPVPYGLLEKFFQGLERVLIVE 307
              +K  +LK+ T +P  + L+EK  + +ER+ + E
Sbjct: 305 NLGIKAGLLKINTIWPFDFELIEKVAEKVERIYVPE 340


>pir||H69004 2-oxoglutarate--ferredoxin oxidoreductase (EC 1.2.7.-) alpha chain
           - Methanobacterium thermoautotrophicum (strain Delta H)
           >gi|2622136|gb|AAB85529.1| (AE000875) 2-oxoglutarate
           oxidoreductase, alpha subunit  [Methanobacterium
           thermoautotrophicum]
           Length = 378
           
 Score = 83.5 bits (203), Expect = 7e-15
 Identities = 86/338 (25%), Positives = 134/338 (39%), Gaps = 48/338 (14%)

Query: 12  KPGERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKV 71
           K  E   + GN A  RGA++     +A YP TPS+EI + MA +  R G       +E  
Sbjct: 2   KMTEEYFIQGNDACARGAIKAGCRFFAGYPITPSTEIAEEMALLLPREGGVFVQMEDEIG 61

Query: 72  AFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVV--------ADDPS 123
           A    + A W+G+R MTA    G ++  +    V Y  +    +V+V           P+
Sbjct: 62  ALGAVIGAVWSGVRGMTATSGPGFSLMQEH---VGYAAMTETPLVIVNVQRGSPSTGQPT 118

Query: 124 MWSSQNEQDTR-AIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHM 182
           M S  +    R        I  L PSSVQE  D    AF ++E+Y   V++       HM
Sbjct: 119 MASQSDMMQARWGSHGDYEIIALSPSSVQECFDFTVRAFNLAEEYRVPVMVMGDEIVGHM 178

Query: 183 RGDVVLGELPQEIKEGKRK--------FGDFKKNPERYVDIPAF---------------- 218
           R  +    +P  +K  KR+        F  F    +   ++PAF                
Sbjct: 179 REKIT---IPDRVKIRKRRGPSVPPEEFLPFSAPEDGVPEMPAFGDGYRIPVTGLTHDEG 235

Query: 219 -----QRPK--HKWLLETIEKFREEFNNSPFNWIEGPEDAKVGIIAPGLSYAYVKEALAW 271
                  P+  H+ +    +K     +       E  EDA + +I+ G     V  A+  
Sbjct: 236 GYPDASNPEGHHRLVKRLCDKILRHRDRISDVQEELTEDAYITVISYGAPSRSVATAVKM 295

Query: 272 LGVDNVKV--LKLGTPFPVPYGLLEKFFQGLERVLIVE 307
              D V+   LK+ TP+P P   +    +   ++L+VE
Sbjct: 296 AREDGVRAGYLKINTPWPFPETEVRAAAERSGKLLVVE 333


>sp|Q57724|KORA_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORA (2-KETOGLUTARATE
           OXIDOREDUCTASE ALPHA CHAIN) (KOR)
           (2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|2127893|pir||E64334 2-oxoacid--ferredoxin
           oxidoreductase (EC 1.2.7.-) alpha chain - Methanococcus
           jannaschii >gi|1592279|gb|AAB98264.1| (U67483)
           2-ketoglutarate ferredoxin oxidoreductase, subunit alpha
           (korA) [Methanococcus jannaschii]
           Length = 366
           
 Score = 83.5 bits (203), Expect = 7e-15
 Identities = 100/370 (27%), Positives = 151/370 (40%), Gaps = 67/370 (18%)

Query: 21  GNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFETALSAS 80
           GNQA  +GA++     +A YP TPS+EI + MA    + G Y     +E  +    + AS
Sbjct: 8   GNQACAKGAIKAGCRFFAGYPITPSTEIAEAMARELPKVGGYYIQMEDEIGSIAAVIGAS 67

Query: 81  WAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVV------ADDPSM---------- 124
           W GL+AMTA    G ++ M   +  +YM     +VV +         P+M          
Sbjct: 68  WGGLKAMTATSGPGFSL-MQENIGFAYMTETPCVVVDIQRGGPSTGQPTMASQGDMMQCR 126

Query: 125 WSSQNEQDTRAIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRG 184
           W S  + +  A+A         PSSVQE  D    AF  +EKY   V +       HMR 
Sbjct: 127 WGSHGDYEVIALA---------PSSVQEMYDFTIMAFNYAEKYRIPVFVMADEIVGHMRE 177

Query: 185 DVVLGE--------LPQEIKEGKRKFGDFKKNPERYV-----------------DIPAFQ 219
            V+L +         P+E K  K+ +   K  PE  V                   P   
Sbjct: 178 KVILHDNIEIINRKKPEE-KPCKKPYPFDKLIPEMPVFGEGYNVHITGLTHDERGYPDVS 236

Query: 220 RPKHKWLLETIEKFREEFNNSPFNWIEGPEDAKVGIIAPGLSYAYVKEALAWL---GVDN 276
              H  L+  I     +  +    W     DA++  +  G     VK A+  L   G+D 
Sbjct: 237 PETHDKLVRRIVNKIRKNKDEIIKWEGENLDAEIVFVCYGSPSRTVKHAVRNLREKGLD- 295

Query: 277 VKVLKLGTPFPVPYGLLEKFFQGLERVLIVE--------ELEPVVEEQVKVWAFDKGINV 328
           V  ++L T +P P  LL+K     ++V++ E        E+E V ++  +V   DK I  
Sbjct: 296 VGYIRLITVYPFPDDLLKKL--KAKKVVVPEMNLGQIYYEVERVCKKAEEVILVDK-IGG 352

Query: 329 EIHGKDLVPR 338
           E+H  + + R
Sbjct: 353 ELHRPEELER 362


>sp|O27112|KORA_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORA (2-KETOGLUTARATE
           OXIDOREDUCTASE ALPHA CHAIN) (KOR)
           (2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           Length = 376
           
 Score = 83.1 bits (202), Expect = 9e-15
 Identities = 85/335 (25%), Positives = 133/335 (39%), Gaps = 48/335 (14%)

Query: 15  ERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFE 74
           E   + GN A  RGA++     +A YP TPS+EI + MA +  R G       +E  A  
Sbjct: 3   EEYFIQGNDACARGAIKAGCRFFAGYPITPSTEIAEEMALLLPREGGVFVQMEDEIGALG 62

Query: 75  TALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVV--------ADDPSMWS 126
             + A W+G+R MTA    G ++  +    V Y  +    +V+V           P+M S
Sbjct: 63  AVIGAVWSGVRGMTATSGPGFSLMQEH---VGYAAMTETPLVIVNVQRGSPSTGQPTMAS 119

Query: 127 SQNEQDTR-AIAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGD 185
             +    R        I  L PSSVQE  D    AF ++E+Y   V++       HMR  
Sbjct: 120 QSDMMQARWGSHGDYEIIALSPSSVQECFDFTVRAFNLAEEYRVPVMVMGDEIVGHMREK 179

Query: 186 VVLGELPQEIKEGKRK--------FGDFKKNPERYVDIPAF------------------- 218
           +    +P  +K  KR+        F  F    +   ++PAF                   
Sbjct: 180 IT---IPDRVKIRKRRGPSVPPEEFLPFSAPEDGVPEMPAFGDGYRIPVTGLTHDEGGYP 236

Query: 219 --QRPK--HKWLLETIEKFREEFNNSPFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLGV 274
               P+  H+ +    +K     +       E  EDA + +I+ G     V  A+     
Sbjct: 237 DASNPEGHHRLVKRLCDKILRHRDRISDVQEELTEDAYITVISYGAPSRSVATAVKMARE 296

Query: 275 DNVKV--LKLGTPFPVPYGLLEKFFQGLERVLIVE 307
           D V+   LK+ TP+P P   +    +   ++L+VE
Sbjct: 297 DGVRAGYLKINTPWPFPETEVRAAAERSGKLLVVE 331


>gi|11498080 2-ketoglutarate ferredoxin oxidoreductase, subunit alpha (korA)
           [Archaeoglobus fulgidus]
           >gi|6685587|sp|O29781|KORA_ARCFU 2-OXOGLUTARATE SYNTHASE
           SUBUNIT KORA (2-KETOGLUTARATE OXIDOREDUCTASE ALPHA
           CHAIN) (KOR) (2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE
           ALPHA SUBUNIT) >gi|7433685|pir||E69308
           2-oxoglutarate--ferredoxin oxidoreductase (EC 1.2.7.-)
           alpha chain korA - Archaeoglobus fulgidus
           >gi|2650159|gb|AAB90768.1| (AE001072) 2-ketoglutarate
           ferredoxin oxidoreductase, subunit alpha (korA)
           [Archaeoglobus fulgidus]
           Length = 346
           
 Score = 81.5 bits (198), Expect = 3e-14
 Identities = 84/311 (27%), Positives = 133/311 (42%), Gaps = 25/311 (8%)

Query: 15  ERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFE 74
           E  L+ GN+A VRGA+      +A YP TPSSEI   MA +  + G       +E  +  
Sbjct: 2   EMELIQGNEAAVRGAINAGCNFFAGYPITPSSEIAHGMAELLPKFGGVFIQMEDEIASIS 61

Query: 75  TALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVV---VVADDPSMW----SS 127
             + AS AG  AMTA    G ++  +    + Y  +    VV   V+   PS       S
Sbjct: 62  AVIGASMAGAVAMTATSGPGFSLMQEG---MGYAAITESPVVIFNVMRAGPSTGIPTAPS 118

Query: 128 QNEQDTRAIAKFANIP--VLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGD 185
           Q +          + P  VL P+SV++   +   AF+I+ ++   VI+ +     HMR  
Sbjct: 119 QGDAMQARYGSHGDYPIVVLAPASVKDMYYLTVEAFKIAFRFSTPVIVLSDEIVGHMRES 178

Query: 186 VV---LGELPQEIKEGKRKFGDFKKNPERYV----DIPAFQRPKHKWLLETIEKFREEFN 238
           V    LGE+    K  K      +++    V     +P     +++ LL  +    ++F 
Sbjct: 179 VALPPLGEIESYEKRAKNLIDGRRRHRTGLVHTENGLPTTDLEEYEKLLRLLFAKFDDFR 238

Query: 239 NSPFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLGVDNVK--VLKLGTPFPVPYGLLEKF 296
             P    EG E   V  +A G SY   K +   L    V   +LKL + FP P   + ++
Sbjct: 239 --PMVRFEGEEG--VLFVAYGSSYRLAKSSAKLLAEKGVSAGILKLESLFPFPEDAVRRY 294

Query: 297 FQGLERVLIVE 307
            +  + V++ E
Sbjct: 295 SKKADLVVVPE 305


>pir||A53708 indolepyruvate synthase (EC 1.2.7.-) alpha subunit - Pyrococcus
          furiosus (fragment) >gi|547118|gb|AAB31014.1|
          indolepyruvate ferredoxin oxidoreductase alpha subunit,
          IOR alpha {N-terminal} [Pyrococcus furiosus, DSM 3638,
          Peptide Partial, 40 aa]
          Length = 40
          
 Score = 78.8 bits (191), Expect = 2e-13
 Identities = 37/40 (92%), Positives = 38/40 (94%)

Query: 2  VKVTDIVLWDKPGERVLLLGNQAIVRGALEGNIGVYAAYP 41
          VKVTDIVLWDKPGERVLLLGNQAIVRGALEGNI V+A YP
Sbjct: 1  VKVTDIVLWDKPGERVLLLGNQAIVRGALEGNIAVFAXYP 40


>pir||A69194 2-oxoacid--ferredoxin oxidoreductase (EC 1.2.7.-) alpha chain -
           Methanobacterium thermoautotrophicum (strain Delta H)
           >gi|2621790|gb|AAB85209.1| (AE000849) 2-oxoisovalerate
           oxidoreductase, beta subunit  [Methanobacterium
           thermoautotrophicum]
           Length = 348
           
 Score = 77.3 bits (187), Expect = 5e-13
 Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 60/337 (17%)

Query: 18  LLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFETAL 77
           ++ GN A++ GA+      Y  YP TP+SEI    +      G     + +E+ A     
Sbjct: 1   MVKGNTAVIIGAMYAGCDCYFGYPITPASEILHEASRYFPMVGRKFVQAESEEAAINMVY 60

Query: 78  SASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSMWSSQNEQ-DTRAI 136
            A+ AG R MTA    G+++  +    ++   +   +V V+   P + +   EQ D   I
Sbjct: 61  GAAAAGHRVMTASSGPGISLKQEGISFLAGAELPAVIVDVMRAGPGLGNIGPEQGDYNQI 120

Query: 137 AK------FANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVVLGE 190
            K      + N+ VL PSSVQE  D+   AFE+++KY   V++ T         D VLG+
Sbjct: 121 VKGGGHGNYRNM-VLAPSSVQEMCDLTMEAFELADKYRNPVVVLT---------DAVLGQ 170

Query: 191 LPQEIKEGKRKFGDFKKNPERYVDIPAFQRPKHKWLL----ETIEKF----------REE 236
           + +               P R+ +     RP   W +    ET++             EE
Sbjct: 171 MAE---------------PLRFPEEAVEHRPDTSWAVCGNRETMKNLVTSIFLDFDELEE 215

Query: 237 FN---NSPFNWIEGPE---------DAKVGIIAPGLSYAYVKEALAWLGVD--NVKVLKL 282
           FN      +  IE  E         DA++ ++A G+S    + A+     +  NV +L+ 
Sbjct: 216 FNFYLQEKYARIEENEVRYEEYLVDDAEIVMVAYGISSRVARSAVETARAEGINVGLLRP 275

Query: 283 GTPFPVPYGLLEKFFQGLERVLIVEELEPVVEEQVKV 319
            T FP P   + +   G  R + VE     + E +++
Sbjct: 276 ITLFPFPSDRIRELADGGCRFISVEMSSGQMREDIRM 312


>sp|O26800|VORB_METTH KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB (VOR) (2-OXOISOVALERATE
           OXIDOREDUCTASE BETA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
           OXIDOREDUCTASE BETA SUBUNIT)
           Length = 352
           
 Score = 77.3 bits (187), Expect = 5e-13
 Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 60/337 (17%)

Query: 18  LLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFETAL 77
           ++ GN A++ GA+      Y  YP TP+SEI    +      G     + +E+ A     
Sbjct: 5   MVKGNTAVIIGAMYAGCDCYFGYPITPASEILHEASRYFPMVGRKFVQAESEEAAINMVY 64

Query: 78  SASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSMWSSQNEQ-DTRAI 136
            A+ AG R MTA    G+++  +    ++   +   +V V+   P + +   EQ D   I
Sbjct: 65  GAAAAGHRVMTASSGPGISLKQEGISFLAGAELPAVIVDVMRAGPGLGNIGPEQGDYNQI 124

Query: 137 AK------FANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVVLGE 190
            K      + N+ VL PSSVQE  D+   AFE+++KY   V++ T         D VLG+
Sbjct: 125 VKGGGHGNYRNM-VLAPSSVQEMCDLTMEAFELADKYRNPVVVLT---------DAVLGQ 174

Query: 191 LPQEIKEGKRKFGDFKKNPERYVDIPAFQRPKHKWLL----ETIEKF----------REE 236
           + +               P R+ +     RP   W +    ET++             EE
Sbjct: 175 MAE---------------PLRFPEEAVEHRPDTSWAVCGNRETMKNLVTSIFLDFDELEE 219

Query: 237 FN---NSPFNWIEGPE---------DAKVGIIAPGLSYAYVKEALAWLGVD--NVKVLKL 282
           FN      +  IE  E         DA++ ++A G+S    + A+     +  NV +L+ 
Sbjct: 220 FNFYLQEKYARIEENEVRYEEYLVDDAEIVMVAYGISSRVARSAVETARAEGINVGLLRP 279

Query: 283 GTPFPVPYGLLEKFFQGLERVLIVEELEPVVEEQVKV 319
            T FP P   + +   G  R + VE     + E +++
Sbjct: 280 ITLFPFPSDRIRELADGGCRFISVEMSSGQMREDIRM 316


>pir||C75168 2-ketoglutarate ferredoxin oxidoreductase, chain alpha  (kora-1)
           PAB2359 - Pyrococcus abyssi (strain Orsay)
           >gi|5457936|emb|CAB49426.1| (AJ248284) 2-ketoglutarate
           ferredoxin oxidoreductase, subunit alpha (korA-1)
           [Pyrococcus abyssi]
           Length = 408
           
 Score = 70.6 bits (170), Expect = 5e-11
 Identities = 58/209 (27%), Positives = 92/209 (43%), Gaps = 17/209 (8%)

Query: 12  KPGERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKV 71
           KPG    ++G++A+  GA+      YA YP TPSSEI +TMA    + G Y     +E  
Sbjct: 31  KPGN-YFMMGDEAVAYGAIFAGCRFYAGYPITPSSEIAETMARELPKVGGYYLQMEDEIA 89

Query: 72  AFETALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSM-WSSQNE 130
           +    + ASW GL+ MTA    G ++  ++            LV V    PS   +++  
Sbjct: 90  SIAAMVGASWTGLKVMTATSGPGFSLMQENLGYAVMTETPLVLVDVQRSGPSTGQATKGA 149

Query: 131 QDTRAIAKFAN-----IPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRG- 184
           Q     A++       I  + P SV++A      AF ++E+    V++       H R  
Sbjct: 150 QGDFFQARWGTHGDHPIVAISPVSVEDAFWETIRAFNVAERLRTPVVVLFDGILGHTREQ 209

Query: 185 ---------DVVLGELPQEIKEGKRKFGD 204
                    ++V  +LPQ  +E +  FGD
Sbjct: 210 IRIPDPDEVEIVYRKLPQNEEEARLPFGD 238


>pir||H72214 hypothetical protein TM1759 - Thermotoga maritima (strain MSB8)
           >gi|4982338|gb|AAD36824.1|AE001814_6 (AE001814)
           2-oxoisovalerate oxidoreductase, beta subunit, putative
           [Thermotoga maritima]
           Length = 356
           
 Score = 70.2 bits (169), Expect = 7e-11
 Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 37/343 (10%)

Query: 15  ERVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFE 74
           +++++ GN+AI   A+     +Y AYP TP SEI + MA      G     + +E     
Sbjct: 5   KKLMMKGNEAIAESAIRAGCRLYFAYPITPQSEIAEYMARRLPEVGGVFLQTESEIATVN 64

Query: 75  TALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSMWSSQNEQDTR 134
               A+  G R MT+    G ++  +    ++   +    V VV   P + + Q  Q   
Sbjct: 65  MVYGAACTGKRVMTSTSSPGFSLMQEGISYIAGAELPCVFVDVVRGGPGLGNIQPSQGDY 124

Query: 135 AIAKFA------NIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVVL 188
             A          + VL PS++QEA D+ + AF+++++Y   V++        M   V L
Sbjct: 125 FQAVKGGGHGDYRLIVLAPSTLQEAVDLTQLAFDLADRYRNPVLILADGMIGQMMEPVEL 184

Query: 189 GE------LPQEIKEGKRKFGDFKKNPERYVDIPAF-----------QRPKHKW-LLETI 230
            E      LP       R  G   + P R   I AF           +R + K+ L+E  
Sbjct: 185 PEMRDLSTLPDHSDWALR--GARNREPHR---IAAFNIDPVGLEKMNKRLQEKYRLIEAS 239

Query: 231 EKFREEFNNSPFNWIEGPEDAKVGIIAPGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPY 290
           E+  EE+       ++G E   VG    G     V ++L   G+    + +  T +P P 
Sbjct: 240 EQRWEEYR------VDGAEYLMVGYGTMGRILKSVVDSLREEGIP-AGLFRPVTLWPFPK 292

Query: 291 GLLEKFFQGLERVLIVEELEPVVEEQVKVWAFDKGINVEIHGK 333
             L++  + ++ + +VE     + E V++ + +  + V  +G+
Sbjct: 293 RRLKELAKKVQLIFVVEMSSGQMVEDVQI-SVEGKVPVHFYGR 334


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254177454
Number of Sequences: 2977
Number of extensions: 11265554
Number of successful extensions: 32284
Number of sequences better than 1.0e-10: 20
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 32193
Number of HSP's gapped (non-prelim): 24
length of query: 648
length of database: 189,106,746
effective HSP length: 56
effective length of query: 592
effective length of database: 155,591,474
effective search space: 92110152608
effective search space used: 92110152608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)