BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0857 (iorB-1) DE:indolepyruvate ferredoxin oxidoreductase,
subunit beta (iorB-1)
         (202 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75038 indolepyruvate ferredoxin oxidoreductase, chain beta...   399  e-110
sp|O58496|IORB_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ...   385  e-106
sp|O07836|IORB_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ...   302  2e-81
sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ...   162  3e-39
gi|11499612 indolepyruvate ferredoxin oxidoreductase, subunit be...   158  5e-38
pir||F71246 probable indolepyruvate ferredoxin oxidoreductase be...   152  3e-36
pir||F75210 indolepyruvate ferredoxin oxidoreductase, chain beta...   143  2e-33
emb|CAC12142.1| (AL445066) probable indolepyruvate ferredoxin ox...   110  1e-23
gb|AAK42251.1| Indolepyruvate ferredoxin oxidoreductase beta sub...    97  2e-19

>pir||F75038 indolepyruvate ferredoxin oxidoreductase, chain beta  (iorb-1)
           PAB0857 - Pyrococcus abyssi (strain Orsay)
           >gi|5458716|emb|CAB50203.1| (AJ248287) indolepyruvate
           ferredoxin oxidoreductase, subunit beta (iorB-1)
           [Pyrococcus abyssi]
           Length = 202
           
 Score =  399 bits (1015), Expect = e-110
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
           MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY
Sbjct: 1   MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60

Query: 61  GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120
           GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK
Sbjct: 61  GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120

Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
           IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK
Sbjct: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180

Query: 181 AVDVNMRAFELGVKAAKEMLNL 202
           AVDVNMRAFELGVKAAKEMLNL
Sbjct: 181 AVDVNMRAFELGVKAAKEMLNL 202


>sp|O58496|IORB_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
           >gi|7430384|pir||E71124 probable indolepyruvate
           ferredoxin oxidoreductase beta subunit - Pyrococcus
           horikoshii >gi|3257172|dbj|BAA29855.1| (AP000003) 202aa
           long hypothetical indolepyruvate ferredoxin
           oxidoreductase beta subunit [Pyrococcus horikoshii]
           Length = 202
           
 Score =  385 bits (979), Expect = e-106
 Identities = 191/202 (94%), Positives = 201/202 (98%)

Query: 1   MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
           MKEYNIVITGVGGQGILTAANLLGWAAL+AGYKVRVGEVHGMSQRFGSVIAYVRFG+DVY
Sbjct: 1   MKEYNIVITGVGGQGILTAANLLGWAALKAGYKVRVGEVHGMSQRFGSVIAYVRFGDDVY 60

Query: 61  GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120
           GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLA+YPS+EEI++
Sbjct: 61  GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLATYPSLEEIKR 120

Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
           IVEE+F GKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIR+SVPPK
Sbjct: 121 IVEEEFNGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRLSVPPK 180

Query: 181 AVDVNMRAFELGVKAAKEMLNL 202
           AVDVNM+AF+LGVKAAKEMLNL
Sbjct: 181 AVDVNMKAFDLGVKAAKEMLNL 202


>sp|O07836|IORB_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
           >gi|2209071|dbj|BAA20529.1| (D86221) indolepyruvate
           ferredoxin oxidoreductase beta subunit [Pyrococcus sp.]
           Length = 226
           
 Score =  302 bits (765), Expect = 2e-81
 Identities = 152/198 (76%), Positives = 169/198 (84%)

Query: 1   MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
           MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY
Sbjct: 1   MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60

Query: 61  GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120
           GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLA+YP+++E++K
Sbjct: 61  GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLATYPTLDEMKK 120

Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
           IVEEDFGGKF+     ++         TNVVLIGAL++TPGFPLS    K   +  VPPK
Sbjct: 121 IVEEDFGGKFMGLRRREVGYGGWQHRHTNVVLIGALSKTPGFPLSEVADKGGHQDHVPPK 180

Query: 181 AVDVNMRAFELGVKAAKE 198
            +DVNMR+  L +K  ++
Sbjct: 181 TIDVNMRSSSLALKPLRK 198


>sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
           >gi|7430381|pir||H69114 indolepyruvate oxidoreductase,
           beta subunit - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622989|gb|AAB86319.1| (AE000938)
           indolepyruvate oxidoreductase, beta subunit 
           [Methanobacterium thermoautotrophicum]
           Length = 196
           
 Score =  162 bits (405), Expect = 3e-39
 Identities = 80/195 (41%), Positives = 129/195 (66%), Gaps = 2/195 (1%)

Query: 4   YNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGAM 63
           YNI + GVGGQGI+  + ++G AA++    V + E+HGM+QR GSV   +R GE V+G++
Sbjct: 3   YNIYVCGVGGQGIIKTSVIIGEAAMKKDINVVMSEIHGMAQRGGSVSTEIRIGE-VHGSI 61

Query: 64  VPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRKIVE 123
           +P+G+AD++L+FEP+EA+R +  + +   V  N   IPP  +      YP ++EI   +E
Sbjct: 62  IPDGEADLVLAFEPLEAIRALPKMSEESEVILNTSVIPPFNLMRSPHPYPPLDEIMSTLE 121

Query: 124 EDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPKAVD 183
           E   G    F+AE++A++AG++++ N+V++GA   TPGFPL +E +   +R ++P + +D
Sbjct: 122 ER-AGSVRGFNAEEIALKAGHILSLNMVMLGAAAATPGFPLESESLISSMRDNLPSRLID 180

Query: 184 VNMRAFELGVKAAKE 198
           VN+RAF  G  AA E
Sbjct: 181 VNLRAFRDGFGAAAE 195


>gi|11499612 indolepyruvate ferredoxin oxidoreductase, subunit beta (iorB)
           [Archaeoglobus fulgidus]
           >gi|6685557|sp|O28249|IORB_ARCFU INDOLEPYRUVATE
           OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
           >gi|7430382|pir||E69503 indolepyruvate ferredoxin
           oxidoreductase, subunit beta  (iorB) homolog -
           Archaeoglobus fulgidus >gi|2648506|gb|AAB89225.1|
           (AE000963) indolepyruvate ferredoxin oxidoreductase,
           subunit beta (iorB) [Archaeoglobus fulgidus]
           Length = 201
           
 Score =  158 bits (395), Expect = 5e-38
 Identities = 86/196 (43%), Positives = 121/196 (60%), Gaps = 10/196 (5%)

Query: 5   NIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGAMV 64
           NIV+ GVGGQG LT + ++  AA+RAG  V   E HGM+QR GSV  +VR G DV   ++
Sbjct: 4   NIVVVGVGGQGALTTSGIIARAAMRAGLNVVTAETHGMAQRGGSVEVHVRIG-DVRAPLI 62

Query: 65  PEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEI----RK 120
           PEG ADV+++ EP EALRY  +L K  LV  N R I P  V+ G A YP ++EI    RK
Sbjct: 63  PEGGADVMIALEPAEALRYAKFLNKNTLVILNTRKIIPPSVTAGTAKYPELDEIIGELRK 122

Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
           +       + +  +A ++A +AG+V+ TNVV++G L      P   EHV+E IR ++  K
Sbjct: 123 VTP-----RVIPVNASEIAEKAGSVLATNVVVVGMLFGYYSMPFGIEHVEEAIRETMKSK 177

Query: 181 AVDVNMRAFELGVKAA 196
            VD+N++A ++G   A
Sbjct: 178 IVDLNLKALKMGYNQA 193


>pir||F71246 probable indolepyruvate ferredoxin oxidoreductase beta subunit -
           Pyrococcus horikoshii >gi|3256618|dbj|BAA29301.1|
           (AP000001) 196aa long hypothetical indolepyruvate
           ferredoxin oxidoreductase beta subunit [Pyrococcus
           horikoshii]
           Length = 196
           
 Score =  152 bits (380), Expect = 3e-36
 Identities = 82/196 (41%), Positives = 119/196 (59%), Gaps = 7/196 (3%)

Query: 3   EYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGA 62
           E+N++I GVGGQG LT + ++G AA+  GY+VR+GE  GMSQR+GSV++Y+RFGE+VY  
Sbjct: 4   EFNLIIAGVGGQGGLTLSRIIGNAAMIEGYRVRIGETLGMSQRYGSVLSYLRFGEEVYSP 63

Query: 63  MVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRKIV 122
           ++ EGKAD++L+ EPVEALR   +L +      NA PI      +G   YP +EEI++ +
Sbjct: 64  LIEEGKADLMLALEPVEALRNARFLSRKSYAIINAYPIHTATTLVGKERYPDLEEIKEAI 123

Query: 123 EEDFGGKFLAFDAEKLAIEAG--NVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
                GK    +      EA   N  T  V++ G   +    PL  E + E I++++  K
Sbjct: 124 -----GKICRVEMRNFQEEADKINPRTLGVLMTGFAWRKGLLPLKKESIIEGIKLTLREK 178

Query: 181 AVDVNMRAFELGVKAA 196
             D+N RAFE GV+ A
Sbjct: 179 LWDINFRAFERGVELA 194


>pir||F75210 indolepyruvate ferredoxin oxidoreductase, chain beta  (iorb-2)
           PAB0143 - Pyrococcus abyssi (strain Orsay)
           >gi|5457642|emb|CAB49133.1| (AJ248283) indolepyruvate
           ferredoxin oxidoreductase, subunit beta (iorB-2)
           [Pyrococcus abyssi]
           Length = 194
           
 Score =  143 bits (356), Expect = 2e-33
 Identities = 76/194 (39%), Positives = 117/194 (60%), Gaps = 3/194 (1%)

Query: 3   EYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGA 62
           E+N++I GVGGQG LT + ++G AA+  GY+VR+GE  GMSQR+GSV++Y+RFG+++Y  
Sbjct: 2   EFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYSP 61

Query: 63  MVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRKIV 122
           ++ EGKA+++L+ EPVEALR   +L +      NA PI      +G   YP ++EI++ +
Sbjct: 62  LIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEAI 121

Query: 123 EEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPKAV 182
                     F  E   I   N  T  V++ G   +    PL  E + E I++++  K  
Sbjct: 122 SRICNVDMRNFQGEADKI---NPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKLW 178

Query: 183 DVNMRAFELGVKAA 196
           ++N RAFE GV+ A
Sbjct: 179 EMNFRAFERGVELA 192


>emb|CAC12142.1| (AL445066) probable indolepyruvate ferredoxin oxidoreductase beta
           subunit [Thermoplasma acidophilum]
           Length = 202
           
 Score =  110 bits (273), Expect = 1e-23
 Identities = 68/196 (34%), Positives = 107/196 (53%), Gaps = 13/196 (6%)

Query: 1   MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
           M+  NI++ GVGGQGI+T   ++G AA+ +G KV V E HG+SQR GSV  ++R G +V 
Sbjct: 5   MERINILLAGVGGQGIITMGKMIGNAAVNSGIKVFVAETHGLSQRGGSVQVHIRIG-NVM 63

Query: 61  GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120
             ++ +GKAD I+  E  EALR ++Y  KG +   N + I PV   +      +  ++  
Sbjct: 64  APLIEKGKADYIVGLEASEALRNLSYAGKGTVFILNKQTIKPVVPKV------NTPDLEI 117

Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
           +++   G ++   D E++A +AGN   +N VLIG +    G     E  K+   +++   
Sbjct: 118 VLQRLHGFRYYLVDGERIARDAGNPKGSNAVLIGFMV---GMGFFGEMQKKAFEMAM--- 171

Query: 181 AVDVNMRAFELGVKAA 196
             D N+R F  G   A
Sbjct: 172 ITDPNVRCFNAGYAEA 187


>gb|AAK42251.1| Indolepyruvate ferredoxin oxidoreductase beta subunit (iorB)
           [Sulfolobus solfataricus]
           Length = 194
           
 Score = 96.7 bits (237), Expect = 2e-19
 Identities = 57/159 (35%), Positives = 88/159 (54%), Gaps = 8/159 (5%)

Query: 5   NIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGAMV 64
           NI+I GVGGQGI+TA  ++  A   +  KV + E HG++QR G V  +VR G DV   ++
Sbjct: 5   NILIAGVGGQGIITAGKIIAEAGNYSNTKVLIAETHGLAQRGGGVNVHVRIG-DVNSPLI 63

Query: 65  PEGKADVILSFEPVEALRYINYL-KKGGLVFTNARPIPPVQVSMGLASYPSMEEIRKIVE 123
           P GKAD ++  E +E LR +NY  +K   +  N   + PV   + L +      +++I +
Sbjct: 64  PLGKADYLVGLEAIEVLRNLNYASRKHTTIVVNNYVVRPVLPKVKLLT------LQEIFD 117

Query: 124 EDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGF 162
           +  G K    DA ++AI+AGN+   N  ++G L     F
Sbjct: 118 KLKGCKVYVIDANQIAIKAGNIKAANAAMLGFLYSLGAF 156


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.139    0.393 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72331162
Number of Sequences: 2977
Number of extensions: 2919126
Number of successful extensions: 7825
Number of sequences better than 1.0e-10: 9
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7809
Number of HSP's gapped (non-prelim): 9
length of query: 202
length of database: 189,106,746
effective HSP length: 55
effective length of query: 147
effective length of database: 156,189,961
effective search space: 22959924267
effective search space used: 22959924267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)