BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0857 (iorB-1) DE:indolepyruvate ferredoxin oxidoreductase,
subunit beta (iorB-1)
(202 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75038 indolepyruvate ferredoxin oxidoreductase, chain beta... 399 e-110
sp|O58496|IORB_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ... 385 e-106
sp|O07836|IORB_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ... 302 2e-81
sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ... 162 3e-39
gi|11499612 indolepyruvate ferredoxin oxidoreductase, subunit be... 158 5e-38
pir||F71246 probable indolepyruvate ferredoxin oxidoreductase be... 152 3e-36
pir||F75210 indolepyruvate ferredoxin oxidoreductase, chain beta... 143 2e-33
emb|CAC12142.1| (AL445066) probable indolepyruvate ferredoxin ox... 110 1e-23
gb|AAK42251.1| Indolepyruvate ferredoxin oxidoreductase beta sub... 97 2e-19
>pir||F75038 indolepyruvate ferredoxin oxidoreductase, chain beta (iorb-1)
PAB0857 - Pyrococcus abyssi (strain Orsay)
>gi|5458716|emb|CAB50203.1| (AJ248287) indolepyruvate
ferredoxin oxidoreductase, subunit beta (iorB-1)
[Pyrococcus abyssi]
Length = 202
Score = 399 bits (1015), Expect = e-110
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY
Sbjct: 1 MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
Query: 61 GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120
GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK
Sbjct: 61 GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120
Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK
Sbjct: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
Query: 181 AVDVNMRAFELGVKAAKEMLNL 202
AVDVNMRAFELGVKAAKEMLNL
Sbjct: 181 AVDVNMRAFELGVKAAKEMLNL 202
>sp|O58496|IORB_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7430384|pir||E71124 probable indolepyruvate
ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3257172|dbj|BAA29855.1| (AP000003) 202aa
long hypothetical indolepyruvate ferredoxin
oxidoreductase beta subunit [Pyrococcus horikoshii]
Length = 202
Score = 385 bits (979), Expect = e-106
Identities = 191/202 (94%), Positives = 201/202 (98%)
Query: 1 MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
MKEYNIVITGVGGQGILTAANLLGWAAL+AGYKVRVGEVHGMSQRFGSVIAYVRFG+DVY
Sbjct: 1 MKEYNIVITGVGGQGILTAANLLGWAALKAGYKVRVGEVHGMSQRFGSVIAYVRFGDDVY 60
Query: 61 GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120
GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLA+YPS+EEI++
Sbjct: 61 GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLATYPSLEEIKR 120
Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
IVEE+F GKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIR+SVPPK
Sbjct: 121 IVEEEFNGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRLSVPPK 180
Query: 181 AVDVNMRAFELGVKAAKEMLNL 202
AVDVNM+AF+LGVKAAKEMLNL
Sbjct: 181 AVDVNMKAFDLGVKAAKEMLNL 202
>sp|O07836|IORB_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2209071|dbj|BAA20529.1| (D86221) indolepyruvate
ferredoxin oxidoreductase beta subunit [Pyrococcus sp.]
Length = 226
Score = 302 bits (765), Expect = 2e-81
Identities = 152/198 (76%), Positives = 169/198 (84%)
Query: 1 MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY
Sbjct: 1 MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
Query: 61 GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120
GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLA+YP+++E++K
Sbjct: 61 GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLATYPTLDEMKK 120
Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
IVEEDFGGKF+ ++ TNVVLIGAL++TPGFPLS K + VPPK
Sbjct: 121 IVEEDFGGKFMGLRRREVGYGGWQHRHTNVVLIGALSKTPGFPLSEVADKGGHQDHVPPK 180
Query: 181 AVDVNMRAFELGVKAAKE 198
+DVNMR+ L +K ++
Sbjct: 181 TIDVNMRSSSLALKPLRK 198
>sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7430381|pir||H69114 indolepyruvate oxidoreductase,
beta subunit - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622989|gb|AAB86319.1| (AE000938)
indolepyruvate oxidoreductase, beta subunit
[Methanobacterium thermoautotrophicum]
Length = 196
Score = 162 bits (405), Expect = 3e-39
Identities = 80/195 (41%), Positives = 129/195 (66%), Gaps = 2/195 (1%)
Query: 4 YNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGAM 63
YNI + GVGGQGI+ + ++G AA++ V + E+HGM+QR GSV +R GE V+G++
Sbjct: 3 YNIYVCGVGGQGIIKTSVIIGEAAMKKDINVVMSEIHGMAQRGGSVSTEIRIGE-VHGSI 61
Query: 64 VPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRKIVE 123
+P+G+AD++L+FEP+EA+R + + + V N IPP + YP ++EI +E
Sbjct: 62 IPDGEADLVLAFEPLEAIRALPKMSEESEVILNTSVIPPFNLMRSPHPYPPLDEIMSTLE 121
Query: 124 EDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPKAVD 183
E G F+AE++A++AG++++ N+V++GA TPGFPL +E + +R ++P + +D
Sbjct: 122 ER-AGSVRGFNAEEIALKAGHILSLNMVMLGAAAATPGFPLESESLISSMRDNLPSRLID 180
Query: 184 VNMRAFELGVKAAKE 198
VN+RAF G AA E
Sbjct: 181 VNLRAFRDGFGAAAE 195
>gi|11499612 indolepyruvate ferredoxin oxidoreductase, subunit beta (iorB)
[Archaeoglobus fulgidus]
>gi|6685557|sp|O28249|IORB_ARCFU INDOLEPYRUVATE
OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7430382|pir||E69503 indolepyruvate ferredoxin
oxidoreductase, subunit beta (iorB) homolog -
Archaeoglobus fulgidus >gi|2648506|gb|AAB89225.1|
(AE000963) indolepyruvate ferredoxin oxidoreductase,
subunit beta (iorB) [Archaeoglobus fulgidus]
Length = 201
Score = 158 bits (395), Expect = 5e-38
Identities = 86/196 (43%), Positives = 121/196 (60%), Gaps = 10/196 (5%)
Query: 5 NIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGAMV 64
NIV+ GVGGQG LT + ++ AA+RAG V E HGM+QR GSV +VR G DV ++
Sbjct: 4 NIVVVGVGGQGALTTSGIIARAAMRAGLNVVTAETHGMAQRGGSVEVHVRIG-DVRAPLI 62
Query: 65 PEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEI----RK 120
PEG ADV+++ EP EALRY +L K LV N R I P V+ G A YP ++EI RK
Sbjct: 63 PEGGADVMIALEPAEALRYAKFLNKNTLVILNTRKIIPPSVTAGTAKYPELDEIIGELRK 122
Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
+ + + +A ++A +AG+V+ TNVV++G L P EHV+E IR ++ K
Sbjct: 123 VTP-----RVIPVNASEIAEKAGSVLATNVVVVGMLFGYYSMPFGIEHVEEAIRETMKSK 177
Query: 181 AVDVNMRAFELGVKAA 196
VD+N++A ++G A
Sbjct: 178 IVDLNLKALKMGYNQA 193
>pir||F71246 probable indolepyruvate ferredoxin oxidoreductase beta subunit -
Pyrococcus horikoshii >gi|3256618|dbj|BAA29301.1|
(AP000001) 196aa long hypothetical indolepyruvate
ferredoxin oxidoreductase beta subunit [Pyrococcus
horikoshii]
Length = 196
Score = 152 bits (380), Expect = 3e-36
Identities = 82/196 (41%), Positives = 119/196 (59%), Gaps = 7/196 (3%)
Query: 3 EYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGA 62
E+N++I GVGGQG LT + ++G AA+ GY+VR+GE GMSQR+GSV++Y+RFGE+VY
Sbjct: 4 EFNLIIAGVGGQGGLTLSRIIGNAAMIEGYRVRIGETLGMSQRYGSVLSYLRFGEEVYSP 63
Query: 63 MVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRKIV 122
++ EGKAD++L+ EPVEALR +L + NA PI +G YP +EEI++ +
Sbjct: 64 LIEEGKADLMLALEPVEALRNARFLSRKSYAIINAYPIHTATTLVGKERYPDLEEIKEAI 123
Query: 123 EEDFGGKFLAFDAEKLAIEAG--NVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
GK + EA N T V++ G + PL E + E I++++ K
Sbjct: 124 -----GKICRVEMRNFQEEADKINPRTLGVLMTGFAWRKGLLPLKKESIIEGIKLTLREK 178
Query: 181 AVDVNMRAFELGVKAA 196
D+N RAFE GV+ A
Sbjct: 179 LWDINFRAFERGVELA 194
>pir||F75210 indolepyruvate ferredoxin oxidoreductase, chain beta (iorb-2)
PAB0143 - Pyrococcus abyssi (strain Orsay)
>gi|5457642|emb|CAB49133.1| (AJ248283) indolepyruvate
ferredoxin oxidoreductase, subunit beta (iorB-2)
[Pyrococcus abyssi]
Length = 194
Score = 143 bits (356), Expect = 2e-33
Identities = 76/194 (39%), Positives = 117/194 (60%), Gaps = 3/194 (1%)
Query: 3 EYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGA 62
E+N++I GVGGQG LT + ++G AA+ GY+VR+GE GMSQR+GSV++Y+RFG+++Y
Sbjct: 2 EFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYSP 61
Query: 63 MVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRKIV 122
++ EGKA+++L+ EPVEALR +L + NA PI +G YP ++EI++ +
Sbjct: 62 LIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEAI 121
Query: 123 EEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPKAV 182
F E I N T V++ G + PL E + E I++++ K
Sbjct: 122 SRICNVDMRNFQGEADKI---NPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKLW 178
Query: 183 DVNMRAFELGVKAA 196
++N RAFE GV+ A
Sbjct: 179 EMNFRAFERGVELA 192
>emb|CAC12142.1| (AL445066) probable indolepyruvate ferredoxin oxidoreductase beta
subunit [Thermoplasma acidophilum]
Length = 202
Score = 110 bits (273), Expect = 1e-23
Identities = 68/196 (34%), Positives = 107/196 (53%), Gaps = 13/196 (6%)
Query: 1 MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
M+ NI++ GVGGQGI+T ++G AA+ +G KV V E HG+SQR GSV ++R G +V
Sbjct: 5 MERINILLAGVGGQGIITMGKMIGNAAVNSGIKVFVAETHGLSQRGGSVQVHIRIG-NVM 63
Query: 61 GAMVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRK 120
++ +GKAD I+ E EALR ++Y KG + N + I PV + + ++
Sbjct: 64 APLIEKGKADYIVGLEASEALRNLSYAGKGTVFILNKQTIKPVVPKV------NTPDLEI 117
Query: 121 IVEEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPK 180
+++ G ++ D E++A +AGN +N VLIG + G E K+ +++
Sbjct: 118 VLQRLHGFRYYLVDGERIARDAGNPKGSNAVLIGFMV---GMGFFGEMQKKAFEMAM--- 171
Query: 181 AVDVNMRAFELGVKAA 196
D N+R F G A
Sbjct: 172 ITDPNVRCFNAGYAEA 187
>gb|AAK42251.1| Indolepyruvate ferredoxin oxidoreductase beta subunit (iorB)
[Sulfolobus solfataricus]
Length = 194
Score = 96.7 bits (237), Expect = 2e-19
Identities = 57/159 (35%), Positives = 88/159 (54%), Gaps = 8/159 (5%)
Query: 5 NIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGAMV 64
NI+I GVGGQGI+TA ++ A + KV + E HG++QR G V +VR G DV ++
Sbjct: 5 NILIAGVGGQGIITAGKIIAEAGNYSNTKVLIAETHGLAQRGGGVNVHVRIG-DVNSPLI 63
Query: 65 PEGKADVILSFEPVEALRYINYL-KKGGLVFTNARPIPPVQVSMGLASYPSMEEIRKIVE 123
P GKAD ++ E +E LR +NY +K + N + PV + L + +++I +
Sbjct: 64 PLGKADYLVGLEAIEVLRNLNYASRKHTTIVVNNYVVRPVLPKVKLLT------LQEIFD 117
Query: 124 EDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGF 162
+ G K DA ++AI+AGN+ N ++G L F
Sbjct: 118 KLKGCKVYVIDANQIAIKAGNIKAANAAMLGFLYSLGAF 156
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72331162
Number of Sequences: 2977
Number of extensions: 2919126
Number of successful extensions: 7825
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7809
Number of HSP's gapped (non-prelim): 9
length of query: 202
length of database: 189,106,746
effective HSP length: 55
effective length of query: 147
effective length of database: 156,189,961
effective search space: 22959924267
effective search space used: 22959924267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)