BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0859 (PAB0859) DE:Hypothetical protein
(133 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75039 hypothetical protein PAB0859 - Pyrococcus abyssi (st... 264 4e-70
pir||E75023 hypothetical protein PAB1216 - Pyrococcus abyssi (st... 157 4e-38
gb|AAK42159.1| Conserved hypothetical protein [Sulfolobus solfat... 134 3e-31
gi|11497685 conserved hypothetical protein [Archaeoglobus fulgid... 104 4e-22
gb|AAK41936.1| Conserved hypothetical protein [Sulfolobus solfat... 88 4e-17
>pir||A75039 hypothetical protein PAB0859 - Pyrococcus abyssi (strain Orsay)
>gi|5458719|emb|CAB50206.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 133
Score = 264 bits (667), Expect = 4e-70
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MKIFLDASFIIYLNVDVPDSLAEKIDALYEQLITSSKLYTDVLVIDEVIHVSRKKYKVPY 60
MKIFLDASFIIYLNVDVPDSLAEKIDALYEQLITSSKLYTDVLVIDEVIHVSRKKYKVPY
Sbjct: 1 MKIFLDASFIIYLNVDVPDSLAEKIDALYEQLITSSKLYTDVLVIDEVIHVSRKKYKVPY 60
Query: 61 SKTIEMLDDIVIPYVEVLPIGLMEYLKAKENILKYNLKPSDAIHLAVIENNGIQAIVTED 120
SKTIEMLDDIVIPYVEVLPIGLMEYLKAKENILKYNLKPSDAIHLAVIENNGIQAIVTED
Sbjct: 61 SKTIEMLDDIVIPYVEVLPIGLMEYLKAKENILKYNLKPSDAIHLAVIENNGIQAIVTED 120
Query: 121 EDFDRVPIKRIWL 133
EDFDRVPIKRIWL
Sbjct: 121 EDFDRVPIKRIWL 133
>pir||E75023 hypothetical protein PAB1216 - Pyrococcus abyssi (strain Orsay)
>gi|5459141|emb|CAB50627.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 136
Score = 157 bits (394), Expect = 4e-38
Identities = 73/134 (54%), Positives = 101/134 (74%), Gaps = 1/134 (0%)
Query: 1 MKIFLDASFIIYLNV-DVPDSLAEKIDALYEQLITSSKLYTDVLVIDEVIHVSRKKYKVP 59
MK+FLD + ++YL + V S ID Y L+ +LYTDVLV+DE I++ ++KY VP
Sbjct: 1 MKLFLDTNILVYLALGSVDPSYETSIDEFYRDLMKGHELYTDVLVLDEFIYILKRKYGVP 60
Query: 60 YSKTIEMLDDIVIPYVEVLPIGLMEYLKAKENILKYNLKPSDAIHLAVIENNGIQAIVTE 119
Y K I +++ VIP V++LPI ++YL AK+ +LKY LKPSDA H+AVI+NNG+QAIV+E
Sbjct: 61 YEKAITFIEETVIPVVKILPITFLDYLTAKDVMLKYKLKPSDAFHVAVIQNNGLQAIVSE 120
Query: 120 DEDFDRVPIKRIWL 133
DEDFDR+P+KR+WL
Sbjct: 121 DEDFDRLPLKRLWL 134
>gb|AAK42159.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 128
Score = 134 bits (335), Expect = 3e-31
Identities = 70/132 (53%), Positives = 96/132 (72%), Gaps = 6/132 (4%)
Query: 3 IFLDASFIIYLNVDVPDSLAEKIDALYEQLITSSKLYTDVLVIDEVIHVSRKKYKVPYSK 62
IFLDA+F+IYLN V + + Y +L+T L++D LVIDEVI+VS+KKY V Y
Sbjct: 2 IFLDANFLIYLNSGVSE-----VKEYYIKLLTYESLFSDPLVIDEVIYVSKKKYGVKYCD 56
Query: 63 TIEMLDDIVIPYVEVLPIGLMEYLKAKENILKYNLKPSDAIHLAVIENNGIQAIVTEDED 122
TIE LD+IV+ Y+ VLPI + EY +AKE + KY++KPSDA H+AV+ NN I I++ED++
Sbjct: 57 TIEFLDEIVLKYLTVLPITIKEYERAKEIMRKYSVKPSDAFHIAVMLNNSINVILSEDKE 116
Query: 123 FDRV-PIKRIWL 133
D+V IKRIW+
Sbjct: 117 LDKVAEIKRIWI 128
>gi|11497685 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7482964|pir||A69258 conserved hypothetical protein
AF0065 - Archaeoglobus fulgidus
>gi|2650589|gb|AAB91168.1| (AE001102) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 137
Score = 104 bits (257), Expect = 4e-22
Identities = 56/134 (41%), Positives = 85/134 (62%), Gaps = 3/134 (2%)
Query: 1 MKIFLDASFIIYLNVDVPDSLAEKIDALYEQLITSSKLYTDVLVIDEVIHVSRKKYKVPY 60
MKIFLDA+++IYL D + + L + I L T++L IDEVI + +KYK+
Sbjct: 1 MKIFLDANYLIYLKYSESDEIFDYCVNLLRK-IEKYDLVTNMLAIDEVIWILNRKYKIEL 59
Query: 61 SKTIEMLDDIVIPYVEVLPIGLMEYLKAKENILKYNLKPSDAIHLAVIENNGIQAIVTED 120
+ E LD + + ++ V+PI +Y KE +L YNLKPSD++HL+ + +G+ IV+ED
Sbjct: 60 DEVFEYLDRL-LSFLRVVPIEAEDYDLMKEFMLGYNLKPSDSLHLSSMRRHGVSVIVSED 118
Query: 121 EDFDRVP-IKRIWL 133
DFDRV +KR+W+
Sbjct: 119 SDFDRVDWVKRVWI 132
>gb|AAK41936.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 90
Score = 88.2 bits (215), Expect = 4e-17
Identities = 42/84 (50%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 51 VSRKKYKVPYSKTIEMLDDIVIPYVEVLPIGLMEYLKAKENILKYNLKPSDAIHLAVIEN 110
+S+KKY V + TI+ LD I++PY +LPI +Y KAK ++ LKPSDA H+AV+ N
Sbjct: 6 LSKKKYNVKFEDTIDFLDKIILPYTIILPINSHDYEKAKGIMISKTLKPSDAFHVAVMIN 65
Query: 111 NGIQAIVTEDEDFDRV-PIKRIWL 133
N I+ IV+ED DFD++ I+RIW+
Sbjct: 66 NSIKKIVSEDSDFDKINGIERIWV 89
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45833247
Number of Sequences: 2977
Number of extensions: 1707301
Number of successful extensions: 4804
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4796
Number of HSP's gapped (non-prelim): 5
length of query: 133
length of database: 189,106,746
effective HSP length: 54
effective length of query: 79
effective length of database: 156,788,448
effective search space: 12386287392
effective search space used: 12386287392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)