BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0862 (PAB0862) DE:Hypothetical protein
(361 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st... 715 0.0
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ... 368 e-101
pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st... 349 2e-95
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st... 325 5e-88
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st... 275 7e-73
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st... 256 4e-67
pir||C72308 conserved hypothetical protein - Thermotoga maritima... 240 3e-62
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 232 6e-60
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 231 1e-59
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st... 219 3e-56
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat... 197 2e-49
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat... 151 1e-35
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ... 116 4e-25
gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfat... 114 2e-24
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat... 108 1e-22
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st... 103 3e-21
gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfat... 96 8e-19
pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus... 96 8e-19
gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfat... 84 2e-15
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st... 84 3e-15
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 75 2e-12
gb|AAK41452.1| Hypothetical protein [Sulfolobus solfataricus] 73 5e-12
gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfat... 69 6e-11
pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus... 69 6e-11
>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
>gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 715 bits (1826), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY
Sbjct: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER
Sbjct: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
Query: 121 RQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYDGLIAYAIDNLPNIIFILTGS 180
RQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYDGLIAYAIDNLPNIIFILTGS
Sbjct: 121 RQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYDGLIAYAIDNLPNIIFILTGS 180
Query: 181 EVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEEVV 240
EVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEEVV
Sbjct: 181 EVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEEVV 240
Query: 241 NRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFILKAV 300
NRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFILKAV
Sbjct: 241 NRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFILKAV 300
Query: 301 ALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVKEIVANL 360
ALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVKEIVANL
Sbjct: 301 ALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVKEIVANL 360
Query: 361 K 361
K
Sbjct: 361 K 361
>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
>gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 362
Score = 368 bits (934), Expect = e-101
Identities = 174/360 (48%), Positives = 258/360 (71%), Gaps = 4/360 (1%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLF P PK ++++L+DRE+ELKE +EA+K GE ++LLLG RR+GKSS+LNV L E +P
Sbjct: 4 MLFSPYPKVKREELFDREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELPYPS 63
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
KVDVR +Y Y ++ + ++ + ++ S L K L+ R LE +KG++ISG+++E
Sbjct: 64 VKVDVRKVYSEYSSVNRYIIGKMLL-SALRGRKRLFEEARMFLEKVKGVRISGVNIEINP 122
Query: 121 RQ-DLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGV-RYDGLIAYAIDNLPNIIFILT 178
+ L + E ++ + +G+ ++IAFDEAQYLR G RYDG+IAYAIDNL N+ FILT
Sbjct: 123 KGFSLAELLEVLNEYGSEKGR-IIIAFDEAQYLRFGGATRYDGIIAYAIDNLENLTFILT 181
Query: 179 GSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEE 238
GSEVG+L+DFL ++PK PLFGR + +I + RF+ D S +FL GF E + E+E+
Sbjct: 182 GSEVGLLYDFLKFEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEVERRELEK 241
Query: 239 VVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFILK 298
V +DGI GWL LYGY+R KKL E+ ++ + +A +++ +ELS + +YS RY+FILK
Sbjct: 242 AVEELDGIPGWLALYGYIRVTKKLNHEDCMLEVIKEASSIVNKELSRLFSYSPRYRFILK 301
Query: 299 AVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVKEIVA 358
A+ALG +RW++IK+Y+ + G INDA FS LL NLVK+GY+E+RDG Y+I DP+++++++
Sbjct: 302 AIALGYSRWRDIKDYLTLKVGPINDANFSKLLDNLVKHGYVERRDGRYVITDPVLRKVLS 361
>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
>gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 349 bits (887), Expect = 2e-95
Identities = 171/362 (47%), Positives = 256/362 (70%), Gaps = 7/362 (1%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLF P PKT++++L+DRE+EL+E ++A++ GE +ILLLG+RRLGKSSLLNV L E ++P
Sbjct: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
KVDVR Y + ++ + V+ R ++ ++ + + L +KGI ISG+ ++
Sbjct: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEA----KNFLRRVKGISISGVRIDVSP 116
Query: 121 RQ-DLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGV-RYDGLIAYAIDNLPNIIFILT 178
R + + E ++ + ER G+ V+IAFDEAQYLR G RYDG++AYAIDNL N+ FILT
Sbjct: 117 RDFSIVELLEALNDYGERTGR-VIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILT 175
Query: 179 GSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEE 238
GSEVG+L DFL + P PLFGR + +I+L++F + S +FL +GFEE+ + + EIE+
Sbjct: 176 GSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEK 235
Query: 239 VVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFILK 298
V +DGIVGWLTLYGY+R +K+ E+++ + +A+ ++ ELS + +YS RYK ILK
Sbjct: 236 AVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILK 295
Query: 299 AVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVKEIVA 358
A++LG +RW++IK+Y+ + G IND+ FS+LL+NLVK GY+EKR+G Y I DP+++ +
Sbjct: 296 AISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFR 355
Query: 359 NL 360
L
Sbjct: 356 EL 357
>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
>gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 325 bits (824), Expect = 5e-88
Identities = 176/357 (49%), Positives = 237/357 (66%), Gaps = 10/357 (2%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLF+P+PKT ++DLY+RE EL E + ++K G +++LLGIRRLGKSSLLNV L E
Sbjct: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
K+D R +Y +G++P LA I++ ++ + ++ +L+ I+G+ I G+++E
Sbjct: 61 VKIDARKIYSQFGSVPHTALAEIILKEY--TKTTPRERIKDVLKGIRGVSIGGVNLELRT 118
Query: 121 RQD--LPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYDGLIAYAIDNLPNIIFILT 178
+ L + ERI+ ER VIA DEAQYLR S +Y LI++AID+L NI FILT
Sbjct: 119 NKSVSLSEVLERINSLGER----FVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFILT 174
Query: 179 GSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEE 238
GSEVG+L DFL + +P+ PLFGR + EI L+RF R +S DFLR+GFEE+ + +EE+EE
Sbjct: 175 GSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEE 234
Query: 239 VVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFILK 298
VV+ +DGIVGWLTLYGY R + L ++L L AK LI E S + S RY+ +K
Sbjct: 235 VVDELDGIVGWLTLYGYNRYL-GLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMK 293
Query: 299 AVALGNTRWKNIKEYVEFRTG-RINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVK 354
AVA G RWK IKE VE G RI+D FSN+L NLV+Y YLEK Y IPDPLV+
Sbjct: 294 AVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVE 350
>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
>gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 275 bits (695), Expect = 7e-73
Identities = 154/369 (41%), Positives = 231/369 (61%), Gaps = 17/369 (4%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLFDPRPK +++D++DRE+E+ E + A++ I L+LGIRR+GKSSLL L E
Sbjct: 1 MLFDPRPKEKREDIFDREKEIDEIESAIR-DYPITLILGIRRVGKSSLLKAVLNEMEGGI 59
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLT-LRKILESIKGIKISGIHVEFE 119
+DVR LYF G +V K +E + S K + L L+SI+GI +SG+ V F
Sbjct: 60 Y-IDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFT 118
Query: 120 RRQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGV----RYDGLIAYAIDNLPNIIF 175
R L S+ ER++ E +V++AFDEAQYL+ G + ++AYA DNLPN+ F
Sbjct: 119 HRVSLSSLLERLN-----EQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
Query: 176 ILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEE 235
+ TGSEVG+LHDF+G+ + P++GR Y E+ ++ F+R+ S FLR GFEE + +EE
Sbjct: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
Query: 236 IEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKF 295
I+E V+ + GI GWL +GY VK EE++ + +A+ L++ EL + S RY
Sbjct: 234 IKEAVDVLGGIPGWLVEFGY-HYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVL 292
Query: 296 ILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYL----EKRDGEYIIPDP 351
+LKA++LG RWK+IKE+VE R+GRI +++ +++L+NL ++ E + Y I DP
Sbjct: 293 VLKAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDP 352
Query: 352 LVKEIVANL 360
+V+ I+ L
Sbjct: 353 VVERIIKEL 361
>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
>gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 348
Score = 256 bits (646), Expect = 4e-67
Identities = 161/368 (43%), Positives = 216/368 (57%), Gaps = 28/368 (7%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLFDP+PK K+DL+DRE EL E ++ I LLLGIRR GKSS++ V L E
Sbjct: 1 MLFDPKPKERKEDLFDREEELAELISSITKYP-ITLLLGIRRTGKSSIIKVSLNE----- 54
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
+D +Y DV RK ++ SE+ L L L + ++ I I GI +E
Sbjct: 55 --IDAIGIYI-------DV--RKAMKGGRVSEERLKLQLLGNIRRLR-INIPGIKLE-PT 101
Query: 121 RQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVR----YDGLIAYAIDNLPNIIFI 176
D+ IF+ ++ + + K +V+AFDEAQY R G R + +AY+ DN I F+
Sbjct: 102 PLDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFL 161
Query: 177 LTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEI 236
+GSEVG+LHDFLG D+ K PLFGR Y EI L+ F RD S +FLR GF E+N N+P E I
Sbjct: 162 FSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHI 221
Query: 237 EEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFI 296
E V+ +DG+ GWL YGY V E+L A +LI ELS + S+RY I
Sbjct: 222 EVAVDELDGVPGWLVEYGY-HYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAI 280
Query: 297 LKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYL--EKRDGE--YIIPDPL 352
LKA++LG RW IKEYVE + G I +A+FS LLKNL K ++ E +DG Y I DP+
Sbjct: 281 LKAISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPV 340
Query: 353 VKEIVANL 360
V+ ++ +L
Sbjct: 341 VERVIRSL 348
>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 365
Score = 240 bits (605), Expect = 3e-62
Identities = 144/363 (39%), Positives = 218/363 (59%), Gaps = 11/363 (3%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
+LF PKT+K+DL+DRERELK+ ++ L+ I+++ G+RR+GKSSL+ V L +S+ +
Sbjct: 6 LLFSLTPKTKKEDLFDRERELKDLEKLLETYP-IVVITGLRRVGKSSLVKVFLNKSDLLH 64
Query: 61 SKVDVRSLY-FAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFE 119
VD R LY + G I L R + E L KS L +L+ ++GI +SG +E
Sbjct: 65 ITVDGRRLYETSGGNISSHHLTRFLGEELSRISKSQKLL--NVLKRVRGITVSGTSIELN 122
Query: 120 RRQ-DLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYDG----LIAYAIDNLPNII 174
++ L + E+++ A+R KK+VI FDEAQYLR G R L AY DN N+
Sbjct: 123 PKEFSLSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYCYDNFENVR 182
Query: 175 FILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDE 234
FI++GSEVG+LHDFL L++ PL GR + + FT D+S DFL GF E+ I +
Sbjct: 183 FIISGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFREVGEKI-NF 241
Query: 235 EIEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYK 294
++EE+V IDGIVG+L L+G ++ ++K K+E+L ++ KAL E+E+ + S+RY
Sbjct: 242 DVEEIVREIDGIVGYLVLFG-VKYLEKKKKDEALKEVFHAVKALFEKEMEELRKRSERYP 300
Query: 295 FILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVK 354
FIL+ +A G W +K + I D++ +LL+ L K ++EK Y I DP+ +
Sbjct: 301 FILRQIARGINTWSALKNIFRAKGDFIGDSRLYSLLETLEKMSFIEKTQSGYRIVDPVFE 360
Query: 355 EIV 357
I+
Sbjct: 361 RIL 363
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 232 bits (585), Expect = 6e-60
Identities = 145/365 (39%), Positives = 216/365 (58%), Gaps = 17/365 (4%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLFD RPK ++D++DRE+E K+ +++++ + LLLGIRR+GKSSLL L E+ P
Sbjct: 1 MLFDLRPKERREDIFDREKEFKKLEKSIE-DYPMTLLLGIRRVGKSSLLKAYLSEN--PG 57
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
+D R LY G I + L RK+ E +K L+ K+ +K +KI V
Sbjct: 58 ILIDCRELYGERGHITRIDLIRKLQERGNIVQK--LLSRFKVSLDLKFLKIEPKEVS--- 112
Query: 121 RQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYD----GLIAYAIDNLPNIIFI 176
L IFE ++ ++ GK V+AFDEAQYLR G R L AYA DNL N+ +
Sbjct: 113 ---LMDIFESLNEIGKKMGK-FVLAFDEAQYLRFYGSRGGKDLLALFAYAYDNLENLKIV 168
Query: 177 LTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEI 236
LTGSEVG+LHDFLG+++ + PL+GR E+ ++ F S +FL+ GF E+N N+ DE I
Sbjct: 169 LTGSEVGLLHDFLGINDYESPLYGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEII 228
Query: 237 EEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFI 296
E+ + +DGI GWL L+G + +++ E+++ + AK LI EL + S+RY I
Sbjct: 229 EKAIEMLDGIPGWLVLFG-VEYMREKDYEKAMKRTFEVAKGLILGELRELEKRSRRYLEI 287
Query: 297 LKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVKEI 356
L+ +ALG RW I++Y+ + + + LL NL K G++ + +G+YI+ DPLVK
Sbjct: 288 LRGIALGYNRWSLIRDYLAVKGIPTPEPRLYELLNNLKKMGWINEVEGKYILSDPLVKVT 347
Query: 357 VANLK 361
+ K
Sbjct: 348 LTEWK 352
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 231 bits (582), Expect = 1e-59
Identities = 142/363 (39%), Positives = 215/363 (59%), Gaps = 21/363 (5%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLFD RPKT ++D++DRE E ++ +E+L+ + LLLGIRR+GKSSLL L E P
Sbjct: 1 MLFDLRPKTRREDIFDREEEFRKLEESLE-NYPLTLLLGIRRVGKSSLLRAFLNER--PG 57
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
+D R LY G I ++ L +++ ++ +K + + KI ++K + + R
Sbjct: 58 ILIDCRELYAERGHITREELIKELQSTISPFQK--FQSKFKISLNLKFLTLE------PR 109
Query: 121 RQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYD----GLIAYAIDNLPNIIFI 176
+ L +F ++ E G+ ++AFDEAQYLR G R L AYA D+LPN+ I
Sbjct: 110 KLSLREVFRELNDLGEELGE-FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKII 168
Query: 177 LTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEI 236
LTGSEVG+LHDFL + + + PL+GR E+++ F +D S +FL+RGF E+N ++P+ EI
Sbjct: 169 LTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEI 228
Query: 237 EEVVNRIDGIVGWLTLYG--YLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYK 294
EE V +DGI GWL ++G YLR G+ ++ AK LI EL + S RY
Sbjct: 229 EEAVELLDGIPGWLVVFGVEYLRN-GDFGR--AMKRTLEVAKGLIMGELEELRRRSPRYV 285
Query: 295 FILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVK 354
IL+A+ALG RW I++Y+ + +I + + LL+NL K ++ + D Y I DP+V
Sbjct: 286 DILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVA 345
Query: 355 EIV 357
++
Sbjct: 346 TVL 348
>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
>gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 219 bits (553), Expect = 3e-56
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 33/372 (8%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
+ FD RPK++++DLYDRE EL+E ++ + +I+L GIRRLGK+SLL V L E+ P+
Sbjct: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
Query: 61 SKVDVRS--------LYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKIS 112
VD+R LY + + D L R K + ++ L+ + GI +S
Sbjct: 84 VIVDLRGVNPNSRRDLYLRFQSALNDYLLRN---------KPIAKKVKDALKMVSGISVS 134
Query: 113 GIHVEFERRQDLPSIFERIDLWAEREGKKVVIAFDEAQYLR-LSGVRYDGLIAYAIDNLP 171
G V + +L +++ I ERE VIA DE Q R L G LIA+ D
Sbjct: 135 GFSVSISWK-NLETLYSLISA-LEREN--FVIALDEVQEARGLVGKELASLIAHFYD-YG 189
Query: 172 NIIFILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANI 231
+ F+LTGSEVG+L+DFLG+DNP+ PL+GR + EI L RFTR++S +FLR GF ++ +
Sbjct: 190 EVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYV 249
Query: 232 PDEEIEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHIL---- 287
DE ++ V R+DGIVGWL +G L ++ E L + +A AL+ EL L
Sbjct: 250 NDEILKLAVERLDGIVGWLVKFGVL-SLRSGASREVLERVLKEASALVLSELDKFLDKRF 308
Query: 288 AYSKRYKFILKAVALGNTRWKNIKEYVE-FRTGRINDAKFSNLLKNLVKYGYLEK----R 342
KRY +LKA+A G W IKE +E I+D + + +L +L+K +EK R
Sbjct: 309 IARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGR 368
Query: 343 DGEYIIPDPLVK 354
+ Y I DP+++
Sbjct: 369 NVRYRIVDPVLE 380
>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 197 bits (495), Expect = 2e-49
Identities = 126/364 (34%), Positives = 206/364 (55%), Gaps = 24/364 (6%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLFD PK +KD +DRE+E+++ + L I L+LG+RR GKSS++ +G+ E N PY
Sbjct: 1 MLFDTSPKDNRKDFFDREKEIEKLKG---LRAPITLVLGLRRTGKSSIIKIGINELNLPY 57
Query: 61 SKVDVRSL----YFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHV 116
+D+R Y +Y ++ +K I L+ SL K L++I+GI I G +
Sbjct: 58 IYLDLRKFEERNYISYKDFLLEL--QKEINKLVKRLPSLL----KALKNIQGIVIMGNEI 111
Query: 117 EFE-RRQDLPSIFERIDLWAEREGKKVVIAFDEAQYL-RLSGVRYDGLIAYAIDNLPNII 174
+F R+D S ++ + + V+I DEAQ L +L GV +AYA DNL I
Sbjct: 112 KFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIK 171
Query: 175 FILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDE 234
FI++GSE+G+L+D+L +++P+ PLFGR + + L F+R+E+ +FLRRGF+E + + D
Sbjct: 172 FIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY 231
Query: 235 EIEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHIL----AYS 290
E+ V +I GI GWLT +G++ + + ++ AK LI +E + L
Sbjct: 232 EV--VYEKIGGIPGWLTYFGFIY-LDNKNLDFAINQTLEYAKKLILKEFENFLHGREIAR 288
Query: 291 KRYKFILKAVALGNTRWKNIKEYVEFRTG-RINDAKFSNLLKNLVKYGYLEKRDGEYIIP 349
KRY I++ ++ +W ++K +E G I+D++ N L L K+ ++ K +Y
Sbjct: 289 KRYLNIMRTLSKCG-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPS 347
Query: 350 DPLV 353
+PL+
Sbjct: 348 EPLI 351
>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 387
Score = 151 bits (377), Expect = 1e-35
Identities = 111/367 (30%), Positives = 196/367 (53%), Gaps = 22/367 (5%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLF+ RPK ++KDLYDRE+E++ ++++ GE I +LG+RR+GK+S++NV +KE
Sbjct: 1 MLFNTRPKEDRKDLYDREKEIEMIKDSIARGE-WIAVLGMRRIGKTSVVNVAVKEIGAIK 59
Query: 61 SKVDVRSLYFAYGT-IPQDVLARKIIESLLASEKSLYLT--LRKILESIKG---IKISGI 114
+++ ++ + P+ VL +IE + + K+ + + K+L +I G I+ + +
Sbjct: 60 VSINLMRIHDSRKKQYPKHVLISLLIEEINEAIKNYTILGKVAKLLSNILGVEEIQTNKV 119
Query: 115 HVEFE--RRQDLPSIFERIDLWAEREGKKVVIAFDEAQYL-RLSGVRYDGLIAYAIDNLP 171
+ R D+ I +D A K++VI DEAQ L +++G+ + + DN
Sbjct: 120 RAKLTKIRGTDITYIIREMDSIARDNKKQLVIILDEAQELAKVNGLDFPSIFHDVYDNCK 179
Query: 172 NIIFILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANI 231
N + I TGS V ++ L +P FGR +I L RF ++S +FL +GFEE +
Sbjct: 180 NTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGFEEEGIKV 239
Query: 232 PDEEIEEVVNRIDGIVGWLTLYG-YLRGVKKLGKEESLISLYSKAKALIEEELSHILAYS 290
+ I+E V R+DGI GWLTL+G K+G + + + KA + E + + +
Sbjct: 240 DESVIDEAVKRLDGIPGWLTLFGSEYTFSAKMGTKPRIDEIIEKAINEVRNEARNFIFST 299
Query: 291 K---RYKFILKAV-ALGNTRWKNIKEYVEFRTGRIN----DAKFSNLLKNLVKYGYLEKR 342
+ RY ++ A+ LG + E V+ + +N + + +L LV++ ++E+R
Sbjct: 300 QSPLRYSAVILALDRLGGK--GELHEIVKVSSTILNENIPEPRVYEILNRLVEFDFIERR 357
Query: 343 -DGEYII 348
D EY +
Sbjct: 358 EDNEYYL 364
>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
>gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 116 bits (288), Expect = 4e-25
Identities = 102/383 (26%), Positives = 170/383 (43%), Gaps = 51/383 (13%)
Query: 3 FDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNV----GLKESNF 58
F RP E+ L+D+ R++ + L NI +LLG RR+GK+S++NV K N
Sbjct: 7 FTTRPIMEEDCLWDKRRKIVDDLFRTVLRGNIAILLGPRRVGKTSVVNVISQKFAKRRNH 66
Query: 59 PYSKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEF 118
Y + A D+ ++ L+ + KS ++L+ I ++ I
Sbjct: 67 HYIYFNFSRFIGARAISIADIEPKRTSLKLITTSKSYVISLKGISVEVRKTSI------- 119
Query: 119 ERRQDLPSIFERIDLWAEREGKKVVIAFDEAQYL-RLSGVRYDGLIAYAIDNLPNIIFIL 177
++ S F + + ++ ++ FDEAQ L RL + + GLI D+ PNI I
Sbjct: 120 ---EEFTSDFSTLVRILSQNSERGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISMIF 176
Query: 178 TGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDE-EI 236
TGS G+L ++L P KP F R E L R+ +E +FL++GFE ++ +E E+
Sbjct: 177 TGSMPGLLIEYLN-PGPDKPNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNELEL 235
Query: 237 EEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKF- 295
E V + GI G+++ YG ++I+L ++ +E+ L L SKRY
Sbjct: 236 ERAVKELGGIPGFISYYGI-----------TVINLV-RSGVPVEKALPRALEESKRYALE 283
Query: 296 --------------------ILKAVALGN-TRWKNIKEYVEFRTGRINDAKFSNLLKNLV 334
++K +A T K + Y L L
Sbjct: 284 EWKKDLEAFLNVYNSPIYVEVMKVLASSYPTALKGAEVYRRMNRAPKRIQHIYKYLDVLE 343
Query: 335 KYGYLEKRDGEYIIPDPLVKEIV 357
K G++ G+Y I DP+++E++
Sbjct: 344 KVGFIRSEGGKYWIEDPILRELL 366
>gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 182
Score = 114 bits (282), Expect = 2e-24
Identities = 68/182 (37%), Positives = 104/182 (56%), Gaps = 15/182 (8%)
Query: 182 VGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEEVVN 241
+G+LHDFLG+++P PL+GR Y EI L+RF +++S FLR+GFEEL+ + + I++++
Sbjct: 1 MGLLHDFLGVEDPGSPLYGRYYFEITLERFDKEKSRQFLRKGFEELSLKVEENVIQDIIA 60
Query: 242 RIDGIVGWLTLYGY-------LRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYK 294
+DGI GWLTL G L+ VK L +L + S ++ +S I+A KRY+
Sbjct: 61 MVDGIPGWLTLAGNQYFNNRDLKRVKDLAINVALNEINSLIS--VKNNVSPIVA--KRYR 116
Query: 295 FILKAVALGNTRWKNIKEYVEFRTG-RINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLV 353
+L+ +A G W I V+ G I+ + SN+L L K + D Y DP+
Sbjct: 117 TVLRCIAKGMNSWSKILNCVQNEEGSTISTSVLSNILNTLKKLSII---DENYRFLDPVY 173
Query: 354 KE 355
KE
Sbjct: 174 KE 175
>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 108 bits (267), Expect = 1e-22
Identities = 112/389 (28%), Positives = 174/389 (43%), Gaps = 71/389 (18%)
Query: 15 YDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPYSKV----------- 63
+ RE+E++ KLG+ + L+ G RR+GK+SLL L+ S+FPYS +
Sbjct: 13 FGREKEIESLLGLYKLGQPVGLI-GPRRIGKTSLLLASLEHSSFPYSLISAEEFVRGEKG 71
Query: 64 -DVRSLYFAYGT-IPQDVLARKIIESLLASEKSLYLTLRKILESIK-------------- 107
D AY T + + ++ + +L KS LR +L +K
Sbjct: 72 FDFAEFLSAYITSVTSTIYSKANYKIILEKGKSYLKQLRDLLGQVKVTFNIPELYSTIEL 131
Query: 108 ----GIKISGIHVEFERRQDLPSIFERIDLWAEREG-KKVVIAFDEAQYLRLSGVRYDGL 162
K + EF DLP I +E+ G ++VVIA DE QYLRL+ G+
Sbjct: 132 TLDKAEKKKYLEKEFRDALDLPQIL------SEKFGLQRVVIAIDEFQYLRLAKQSIPGI 185
Query: 163 IAYAIDNLP---NIIFILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDF 219
N+ ++++GS +GM+ + L N F + + + ++ F R S +F
Sbjct: 186 FHIMRSKWQFHKNVTYVISGSLIGMMMELLSSRNQP---FYQFFYLMKVNPFDRKTSIEF 242
Query: 220 LRRGFEELNANIPDEEIEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKAL- 278
LR+GFE N ++ EEIE +V+++DG WL L G +K E + SL +
Sbjct: 243 LRKGFEVNNLDVKSEEIELIVDQVDGFPAWLNLVGIKIVTEKRSANEVINSLVKDINLVT 302
Query: 279 -IEEELSHILAYSKRYKFILKAVA-LGNTRWKNIKEYVEFRTGRINDAKFSNL-----LK 331
+E +L + S + +LK +A LG G D L LK
Sbjct: 303 ALENDLKRL---SPTARAVLKNLASLGG-------------AGSPKDLGLDLLTVTRGLK 346
Query: 332 NLVKYGYLEKRD-GEYIIPDP-LVKEIVA 358
L+ YG +EK G Y I DP L+K +V+
Sbjct: 347 QLMNYGLVEKEGRGIYRIVDPILIKYLVS 375
>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
>gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 388
Score = 103 bits (255), Expect = 3e-21
Identities = 104/380 (27%), Positives = 181/380 (47%), Gaps = 33/380 (8%)
Query: 3 FDPRPKTEKKDLY--DRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
F RP T+++ L+ + R + E A G NI +LLG RR+GK+S++NV +
Sbjct: 7 FSTRPITDEECLWGENHRRIVDELLRATLKG-NISVLLGPRRVGKTSVVNVVAGKF---- 61
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKIS--GIHVEF 118
+ R ++ Y + + AR I S + ++ T K++ + K +S G+ VE
Sbjct: 62 --IRKRGHHYIYFNFSRFIGARAISISDIEPKR----TSMKLITTSKSYVLSFKGLSVEI 115
Query: 119 ERR--QDLPSIFERIDLWAEREGKKVVIAFDEAQYL-RLSGVRYDGLIAYAIDNLPNIIF 175
+ ++ S F ++ + K+ ++ FDEAQ L RL + + GLI D+ PNI
Sbjct: 116 RKTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISI 175
Query: 176 ILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDE- 234
I TGS G+L +L KP F R E L R++ E +FL+ GF + DE
Sbjct: 176 IFTGSMPGILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDEL 234
Query: 235 EIEEVVNRIDGIVGWLTLYG--YLRGVKK-LGKEESLISLYSKAKALIEEEL-----SHI 286
E+E V + GI G+++ YG + VK + + +L+ ++++ +E + I
Sbjct: 235 ELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFI 294
Query: 287 LAYSKR-YKFILKAVALG-NTRWKNIKEYVEFRTGRINDAKFSNLLK---NLVKYGYLEK 341
YS Y +L+ +A + + + Y E + + ++ K L K G++
Sbjct: 295 NVYSSPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRS 354
Query: 342 RDGEYIIPDPLVKEIVANLK 361
Y I DPL++ +V+N +
Sbjct: 355 DGKRYWIEDPLLRIVVSNFE 374
>gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 395
Score = 95.6 bits (234), Expect = 8e-19
Identities = 96/385 (24%), Positives = 172/385 (43%), Gaps = 60/385 (15%)
Query: 15 YDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFP--------------Y 60
+DRE E+K+ E + + + ++ G+RR+GK+S++ LK P +
Sbjct: 22 FDRENEIKQLVEMMNRRQPVAII-GVRRIGKTSVILKSLKIIETPKVYLSVEDFIEGKSF 80
Query: 61 SKVDVRSLYFAY---GTIPQDVLARKIIESLLASEKSLYLTLRKILESIK-GIKISGIHV 116
V SLY + T+ RKI + + K L LR+++ +K I+ + V
Sbjct: 81 DLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINLVEV 140
Query: 117 EFER--------RQDLPSIFERIDLWAEREG-KKVVIAFDEAQYLRLSGVRYDGLIAYAI 167
E ++ +P + E + AE G +V+A DE QYL+L+ Y G+
Sbjct: 141 EVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKLASQNYPGIFHLLR 200
Query: 168 DNLP---NIIFILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGF 224
+ ++++GS VG+L KK F + + I + +F ++ SF+FL++GF
Sbjct: 201 SKWQFHNKVSYVISGSSVGLLEKIF---YDKKEPFYQFFFPIYVKQFDKNTSFNFLKQGF 257
Query: 225 EELNANIPDEEIEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSK---------- 274
+ + D + + +DGI WL + G+K L E K
Sbjct: 258 RDEGKDYEDNALLLAIEELDGIPAWLNYF----GLKSLQCNEVTSECAKKVIEDITFNDP 313
Query: 275 -AKALIEEELSHILAYSKRYKFILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNL 333
+ +I+EE + + K + ILK +A K + +E IN+ LK+L
Sbjct: 314 IVRGIIQEEYNKL---GKNARIILKYLA--EKGGKGDLKGLELSRASINEG-----LKSL 363
Query: 334 VKYGYLEKRD-GEYIIPDPLVKEIV 357
+ GY+ K + G+Y I DP++ +++
Sbjct: 364 LGSGYIVKEERGKYAIIDPVIVKVL 388
>pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus
>gi|1707745|emb|CAA69465.1| (Y08256) orf c01015
[Sulfolobus solfataricus]
Length = 395
Score = 95.6 bits (234), Expect = 8e-19
Identities = 96/385 (24%), Positives = 172/385 (43%), Gaps = 60/385 (15%)
Query: 15 YDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFP--------------Y 60
+DRE E+K+ E + + + ++ G+RR+GK+S++ LK P +
Sbjct: 22 FDRENEIKQLVEMMNRRQPVAII-GVRRIGKTSVILKSLKIIETPKVYLSVEDFIEGKSF 80
Query: 61 SKVDVRSLYFAY---GTIPQDVLARKIIESLLASEKSLYLTLRKILESIK-GIKISGIHV 116
V SLY + T+ RKI + + K L LR+++ +K I+ + V
Sbjct: 81 DLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINLVEV 140
Query: 117 EFER--------RQDLPSIFERIDLWAEREG-KKVVIAFDEAQYLRLSGVRYDGLIAYAI 167
E ++ +P + E + AE G +V+A DE QYL+L+ Y G+
Sbjct: 141 EVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKLASQNYPGIFHLLR 200
Query: 168 DNLP---NIIFILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGF 224
+ ++++GS VG+L KK F + + I + +F ++ SF+FL++GF
Sbjct: 201 SKWQFHNKVSYVISGSSVGLLEKIF---YDKKEPFYQFFFPIYVKQFDKNTSFNFLKQGF 257
Query: 225 EELNANIPDEEIEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSK---------- 274
+ + D + + +DGI WL + G+K L E K
Sbjct: 258 RDEGKDYEDNALLLAIEELDGIPAWLNYF----GLKSLQCNEVTSECAKKVIEDITFNDP 313
Query: 275 -AKALIEEELSHILAYSKRYKFILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNL 333
+ +I+EE + + K + ILK +A K + +E IN+ LK+L
Sbjct: 314 IVRGIIQEEYNKL---GKNARIILKYLA--EKGGKGDLKGLELSRASINEG-----LKSL 363
Query: 334 VKYGYLEKRD-GEYIIPDPLVKEIV 357
+ GY+ K + G+Y I DP++ +++
Sbjct: 364 LGSGYIVKEERGKYAIIDPVIVKVL 388
>gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 162
Score = 84.3 bits (205), Expect = 2e-15
Identities = 57/155 (36%), Positives = 87/155 (55%), Gaps = 15/155 (9%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
MLFD RPK ++DL+DRE+E+KE + +IL+ G+RR+GK+S+L V L E P+
Sbjct: 1 MLFDERPKENREDLFDREKEIKEIMS--NINRPLILITGVRRIGKTSVLKVALNEIKIPH 58
Query: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYL-TLRKILESIKGIKISGIHVEFE 119
+D R+L Y +R + SL ++ S L T +L I+G+ I G VE +
Sbjct: 59 VIIDCRNLRPNY--------SRGDLYSLFSNAFSSKLSTFLDVLSKIRGVSILGNSVELK 110
Query: 120 -RRQDLPSIFERIDLWAEREGKKVVIAFDEAQYLR 153
+ ++ S+ DL+ K++VI DEAQ LR
Sbjct: 111 WKGREYVSL---SDLFDHLNEKRIVIGIDEAQKLR 142
>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
>gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 385
Score = 83.9 bits (204), Expect = 3e-15
Identities = 91/367 (24%), Positives = 172/367 (46%), Gaps = 26/367 (7%)
Query: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGL----KES 56
+ FD RP+T + L+ RE E+++ AL+ G + + +LG R +GK+SL G KE+
Sbjct: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAG-SWVAVLGPRMVGKTSLALAGANEFAKEN 89
Query: 57 NFPYSKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHV 116
+ VD+R + + +L R + S+L S ++ ++ S KG +G +
Sbjct: 90 GYNVVLVDLRDTE-TFREATEKILGR-LPRSILDSISEYLSSISEV--SAKG---AGAGL 142
Query: 117 EFERRQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYDGLIAYAIDNLPNIIFI 176
+ ++ P+ D A + + ++ DE Q ++ + + + ++ I
Sbjct: 143 TVKLKKSAPARRALSD--ALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENHSLQII 200
Query: 177 LTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEI 236
TGS G++ + +GR I+L + + DFLR GFE+L + EI
Sbjct: 201 FTGSYSGVVRRLFEATYSDES-YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEI 259
Query: 237 EEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHIL-AYSKRYKF 295
+ + + + GWL LYG R V++ E++L + +A + EL +IL S + +
Sbjct: 260 RDTIRNLGTLPGWLNLYGVRRYVER-NHEKALKTAIREAVKEAKSELENILEGRSPKARK 318
Query: 296 ILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRD--GEYIIPDPLV 353
+++ +A G W ++ +TG DA S LL L+ ++ +D G Y DP+
Sbjct: 319 VVRLLAFG-ASWGDL-----IKTGISEDA-LSRLLGILMDELFILNKDDMGIYYFADPVY 371
Query: 354 KEIVANL 360
++ ++
Sbjct: 372 RKAAMSI 378
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 74.5 bits (180), Expect = 2e-12
Identities = 93/362 (25%), Positives = 152/362 (41%), Gaps = 98/362 (27%)
Query: 16 DRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPYSKVDVRSLYFAYGTI 75
+R+REL+ ++ + G N++++ G RR+GK++LL L+E R +YF
Sbjct: 12 NRKRELETLEKLYEKGANLVVIYGRRRVGKTALLRKFLEEK---------RGIYF----- 57
Query: 76 PQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFERRQDLPSIFERIDLWA 135
L S + L++ + + K GI + FE D FE +
Sbjct: 58 -------------LCSRRGYEKDLKRFSQELS--KFFGIPLSFE---DFEDAFE----FL 95
Query: 136 EREGKKVVIAFDEAQYLRLSGVRYDGLIAYAIDNL---PNIIFILTGSEVGMLH-DFLGL 191
++GK VV+ DE YL S + +D + ++ IL GS +GM+ D LG
Sbjct: 96 SKQGKLVVV-IDEFPYLIESYKPVVSVFQRIVDLVLEGSEVMLILCGSSIGMMEKDVLGY 154
Query: 192 DNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEEVVNRIDGIVGWLT 251
K PL+GR + + F + ++ R FE+L +
Sbjct: 155 ---KAPLYGRAQGIMKVKPFRFFDMVEWYGRDFEKL----------------------VR 189
Query: 252 LYGYLRGVKKL------GKEESLIS--------LYSKAKALIEEELSHILAYSKRYKFIL 297
LYG GV + G +E +I L+++AK L+ EEL + Y + I+
Sbjct: 190 LYGVTWGVPRYMEFFREGSDEEIIRNFFDPSSFLFNEAKLLLMEELRNPAVYGE----II 245
Query: 298 KAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEK---------RDGEYII 348
+A+ALGNTR I Y I+ LK L + G +++ + G Y+I
Sbjct: 246 EAIALGNTRLSEIANY-----SMIDAKDLPAYLKTLQELGIVKRITPITKRNAKRGVYVI 300
Query: 349 PD 350
D
Sbjct: 301 ED 302
>gb|AAK41452.1| Hypothetical protein [Sulfolobus solfataricus]
Length = 114
Score = 73.0 bits (176), Expect = 5e-12
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 250 LTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKR---YKFILKAVALGNTR 306
+TL+G V+KL E +L + K ++ EE +H L+ + Y I+ + L + +
Sbjct: 1 MTLFGNFYAVRKLDFEIALRETIGEGKKIMLEEFNHFLSNKENKQLYCNIMNVLKLAS-K 59
Query: 307 WKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVKEIVAN 359
WK+IK VE R G+++D FSN L+NLV + ++ K D EY I D ++KEI N
Sbjct: 60 WKDIKNGVEIRMGKVDDKVFSNALQNLVNFNFVSKVDDEYKIVDLMLKEIDFN 112
>gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 360
Score = 69.5 bits (167), Expect = 6e-11
Identities = 93/377 (24%), Positives = 169/377 (44%), Gaps = 59/377 (15%)
Query: 6 RPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLN-VGLKESN-FPYSKV 63
R TE+ + +DRE + + + + +L RR+GKSSLLN + +K N + +K+
Sbjct: 8 RELTEEDEFFDREDYVNVLLSYINRRQPVAILAP-RRMGKSSLLNYIKIKLGNEYIVAKI 66
Query: 64 DVRSLYFAYGTIPQDVLARKIIESLLASEK--------SLYLTLRKILESIKGIKISGIH 115
+ + + ++ ++ ++E+L S K SL +L + L SIK + I +
Sbjct: 67 SLEGI-TSIEEFADELTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQN 125
Query: 116 VE--------FERRQDLPS-IFERIDLW----AEREGKKVVIAFDEAQYLRLSGVRYDGL 162
+E F+ + PS I + + L AE GK VVI DE Q +R+ + +
Sbjct: 126 LELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVLKQPFPKI 185
Query: 163 IAYA---IDNLPNIIFILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDF 219
+ + N+ I++GSE G++ + + K+P F ++ L F ++ S F
Sbjct: 186 LELTRKRLQESKNVEIIVSGSETGIIEEM--ITEAKEP-FYNYFKIERLKSFDKETSIRF 242
Query: 220 LRRGFEELNANIPDEEIEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALI 279
L G + E E+V +GI WL L G + +E ++ ++ I
Sbjct: 243 LNEGLK----GKCKEYYEKVYELTEGIPAWLNLAGLI-----FERECNIEAILEDPNVEI 293
Query: 280 EEELSHILAYSKRYKFILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNL---LKNLVKY 336
E + + +K +LK +A GN ++++ K SN+ +K L
Sbjct: 294 ELK-KDLEGLTKNEIKVLKGLAKGN---------------KLSEIKVSNIYRVIKILKNR 337
Query: 337 GYLEKRDGEYIIPDPLV 353
G ++K + EY I DP++
Sbjct: 338 GLVDKINDEYKIIDPIL 354
>pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus
>gi|1707707|emb|CAA69473.1| (Y08256) orf c06028
[Sulfolobus solfataricus]
Length = 360
Score = 69.5 bits (167), Expect = 6e-11
Identities = 93/377 (24%), Positives = 169/377 (44%), Gaps = 59/377 (15%)
Query: 6 RPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLN-VGLKESN-FPYSKV 63
R TE+ + +DRE + + + + +L RR+GKSSLLN + +K N + +K+
Sbjct: 8 RELTEEDEFFDREDYVNVLLSYINRRQPVAILAP-RRMGKSSLLNYIKIKLGNEYIVAKI 66
Query: 64 DVRSLYFAYGTIPQDVLARKIIESLLASEK--------SLYLTLRKILESIKGIKISGIH 115
+ + + ++ ++ ++E+L S K SL +L + L SIK + I +
Sbjct: 67 SLEGI-TSIEEFADELTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQN 125
Query: 116 VE--------FERRQDLPS-IFERIDLW----AEREGKKVVIAFDEAQYLRLSGVRYDGL 162
+E F+ + PS I + + L AE GK VVI DE Q +R+ + +
Sbjct: 126 LELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVLKQPFPKI 185
Query: 163 IAYA---IDNLPNIIFILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDF 219
+ + N+ I++GSE G++ + + K+P F ++ L F ++ S F
Sbjct: 186 LELTRKRLQESKNVEIIVSGSETGIIEEM--ITEAKEP-FYNYFKIERLKSFDKETSIRF 242
Query: 220 LRRGFEELNANIPDEEIEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALI 279
L G + E E+V +GI WL L G + +E ++ ++ I
Sbjct: 243 LNEGLK----GKCKEYYEKVYELTEGIPAWLNLAGLI-----FERECNIEAILEDPNVEI 293
Query: 280 EEELSHILAYSKRYKFILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNL---LKNLVKY 336
E + + +K +LK +A GN ++++ K SN+ +K L
Sbjct: 294 ELK-KDLEGLTKNEIKVLKGLAKGN---------------KLSEIKVSNIYRVIKILKNR 337
Query: 337 GYLEKRDGEYIIPDPLV 353
G ++K + EY I DP++
Sbjct: 338 GLVDKINDEYKIIDPIL 354
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.143 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132895457
Number of Sequences: 2977
Number of extensions: 5683690
Number of successful extensions: 15506
Number of sequences better than 1.0e-10: 24
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 15420
Number of HSP's gapped (non-prelim): 25
length of query: 361
length of database: 189,106,746
effective HSP length: 56
effective length of query: 305
effective length of database: 155,591,474
effective search space: 47455399570
effective search space used: 47455399570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)