BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0863 (PAB0863) DE:MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN
related
(201 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75039 multiple antibiotic resistance protein related PAB08... 384 e-106
sp|O58499|Y760_PYRHO HYPOTHETICAL PROTEIN PH0760 >gi|7447538|pir... 333 7e-91
sp|Q59071|YG77_METJA HYPOTHETICAL PROTEIN MJ1677 >gi|2128069|pir... 170 1e-41
pir||E82125 conserved hypothetical protein VC2035 [imported] - V... 142 3e-33
sp|Q58382|Y972_METJA HYPOTHETICAL PROTEIN MJ0972 >gi|2128609|pir... 134 1e-30
sp|P25743|YCHE_ECOLI HYPOTHETICAL 23.5 KD PROTEIN IN ADHE-OPPA I... 127 7e-29
emb|CAC11168.1| (AL445063) hypothetical membrane protein [Thermo... 125 3e-28
sp|O32244|YVBG_BACSU HYPOTHETICAL 22.6 KD PROTEIN IN OPUCA-ENO I... 115 4e-25
sp|O66819|Y540_AQUAE HYPOTHETICAL PROTEIN AQ_540 >gi|7447533|pir... 114 7e-25
sp|P57355|Y267_BUCAI HYPOTHETICAL PROTEIN BU267 >gi|10038942|dbj... 111 5e-24
pir||F75285 conserved hypothetical protein - Deinococcus radiodu... 111 8e-24
pir||E81093 conserved hypothetical protein NMB1354 [imported] - ... 109 3e-23
sp|P46851|YHGN_ECOLI HYPOTHETICAL 21.5 KDA PROTEIN IN ASD-GNTU I... 108 4e-23
pir||A81849 conserved hypothetical protein NMA1566 [imported] - ... 108 4e-23
gi|11499694 conserved hypothetical protein [Archaeoglobus fulgid... 102 2e-21
emb|CAC01363.1| (AL390975) putative integral membrane protein [S... 102 4e-21
dbj|BAA16035.1| (D90852) ORF_ID:o250#8~similar to [SwissProt Acc... 100 1e-20
pir||A72482 hypothetical protein APE2497 - Aeropyrum pernix (str... 97 2e-19
emb|CAC12198.1| (AL445066) conserved hypothetical membrane prote... 96 3e-19
sp|P57524|Y449_BUCAI HYPOTHETICAL PROTEIN BU449 >gi|10039113|dbj... 96 4e-19
gb|AAK40918.1| Conserved hypothetical protein [Sulfolobus solfat... 94 1e-18
emb|CAB57693.1| (Y18930) hypothetical protein [Sulfolobus solfat... 94 1e-18
pir||H83038 hypothetical protein PA4857 [imported] - Pseudomonas... 94 2e-18
sp|Q56068|MARC_SALTY MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARC... 92 4e-18
sp|P31123|MARC_ECOLI MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARC... 90 1e-17
sp|Q9Z6P9|YA10_CHLPN HYPOTHETICAL PROTEIN CPN1010 >gi|7447541|pi... 89 5e-17
pir||A81533 conserved hypothetical protein CP0843 [imported] - C... 89 5e-17
pir||B82531 conserved hypothetical protein XF2666 [imported] - X... 87 1e-16
pir||H82995 conserved hypothetical protein PA5205 [imported] - P... 87 1e-16
sp|O84860|Y852_CHLTR HYPOTHETICAL PROTEIN CT852 >gi|7447542|pir|... 85 4e-16
pir||H81724 conserved hypothetical protein TC0241 [imported] - C... 82 6e-15
pir||E75209 hypothetical protein PAB2220 - Pyrococcus abyssi (st... 80 1e-14
pir||E82960 conserved hypothetical protein PA5486 [imported] - P... 79 3e-14
sp|O57953|Y214_PYRHO HYPOTHETICAL PROTEIN PH0214 >gi|7447536|pir... 79 4e-14
pir||D71256 conserved hypothetical integral membrane protein TP0... 77 1e-13
pir||B81315 probable integral membrane protein Cj1111c [imported... 69 3e-11
>pir||E75039 multiple antibiotic resistance protein related PAB0863 - Pyrococcus
abyssi (strain Orsay) >gi|5458723|emb|CAB50210.1|
(AJ248287) MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN
related [Pyrococcus abyssi]
Length = 201
Score = 384 bits (975), Expect = e-106
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MLEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFAL 60
MLEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFAL
Sbjct: 1 MLEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFAL 60
Query: 61 VGKWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPL 120
VGKWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPL
Sbjct: 61 VGKWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPL 120
Query: 121 ISGPGAITTVMLYMTRESPPIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMG 180
ISGPGAITTVMLYMTRESPPIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMG
Sbjct: 121 ISGPGAITTVMLYMTRESPPIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMG 180
Query: 181 LILTSMAIQMIINGIKGAFGI 201
LILTSMAIQMIINGIKGAFGI
Sbjct: 181 LILTSMAIQMIINGIKGAFGI 201
>sp|O58499|Y760_PYRHO HYPOTHETICAL PROTEIN PH0760 >gi|7447538|pir||A71124 hypothetical
protein PH0760 - Pyrococcus horikoshii
>gi|3257168|dbj|BAA29851.1| (AP000003) 201aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 201
Score = 333 bits (846), Expect = 7e-91
Identities = 168/201 (83%), Positives = 185/201 (91%)
Query: 1 MLEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFAL 60
MLE +KTF +LY G+FAITNP+GAVP+FM VV HL + +HEVA+KVSITV +TL FAL
Sbjct: 1 MLEAIKTFMILYTGMFAITNPIGAVPVFMSVVGHLPAEIKHEVAKKVSITVFITLTVFAL 60
Query: 61 VGKWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPL 120
VG+WIFKFFGSS+DAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPL
Sbjct: 61 VGQWIFKFFGSSIDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPL 120
Query: 121 ISGPGAITTVMLYMTRESPPIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMG 180
ISGPGAITTVMLYMT+ESP IVI TIIAIG++ Y IL SGNKIIE+LGRVG+KVTTRMMG
Sbjct: 121 ISGPGAITTVMLYMTKESPGIVILTIIAIGLTTYGILYSGNKIIERLGRVGVKVTTRMMG 180
Query: 181 LILTSMAIQMIINGIKGAFGI 201
LILTSMA+QMIINGIKGAFGI
Sbjct: 181 LILTSMAMQMIINGIKGAFGI 201
>sp|Q59071|YG77_METJA HYPOTHETICAL PROTEIN MJ1677 >gi|2128069|pir||C64509 hypothetical
protein homolog MJ1677 - Methanococcus jannaschii
>gi|1592344|gb|AAB99699.1| (U67608) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 205
Score = 170 bits (426), Expect = 1e-41
Identities = 87/203 (42%), Positives = 138/203 (67%), Gaps = 11/203 (5%)
Query: 5 LKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKW 64
L+ F + + +F+I NP GAVP+F+ + +R VA+K I L LL FAL G+W
Sbjct: 3 LQYFILAFSSIFSILNPFGAVPVFITLTESYPKKERDLVAKKTVIYALAILLAFALFGEW 62
Query: 65 IFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDV----TLEEVAVIPLAIPL 120
I KFFG S+DAF IAGGILL + ++M+ G+ KI +++ ++E+A++PLA PL
Sbjct: 63 ILKFFGISLDAFKIAGGILLLLISLDMVRGQ-QEAKIHRKEIEAAYEIDEIALMPLATPL 121
Query: 121 ISGPGAITTVMLYMTRESP-----PIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVT 175
++GPG+IT M+ M S +++A ++++GI+ Y+ L S +++++GR+GI++
Sbjct: 122 LAGPGSITACMVAMAEASDIGDKFLVILAILLSLGIT-YLTLLSAESVLDRIGRLGIRIL 180
Query: 176 TRMMGLILTSMAIQMIINGIKGA 198
TRMMGLILT++A+QMI+NGI+GA
Sbjct: 181 TRMMGLILTAIAVQMIVNGIRGA 203
>pir||E82125 conserved hypothetical protein VC2035 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656581|gb|AAF95183.1|
(AE004278) conserved hypothetical protein [Vibrio
cholerae]
Length = 212
Score = 142 bits (355), Expect = 3e-33
Identities = 69/200 (34%), Positives = 124/200 (61%), Gaps = 8/200 (4%)
Query: 8 FAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFK 67
F ++GL A NPVG +P+F+ + H+ +++++ A +I V + L+ L G+ +
Sbjct: 9 FLQFFLGLVAAVNPVGIMPVFVSLTGHMTLEEKNKTAATANIAVAIILIIALLAGQMLLD 68
Query: 68 FFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEED----VTLEEVAVIPLAIPLISG 123
F S+D+F +AGG+LL + M+SGKL K ++++ ++ E++AV+PLA+PL++G
Sbjct: 69 LFSISLDSFRVAGGLLLLSIAFSMMSGKLGEDKQNKQEKSEYISREQIAVVPLAMPLMAG 128
Query: 124 PGAITTVMLYMTRESPPI----VIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMM 179
PGAI++ ++Y +R + +I T++A +++ S I+ LG+ GI V TR+M
Sbjct: 129 PGAISSTIVYGSRYPNMLDTLGIILTVVAFSFCSWLLFRSAPYIVRLLGQTGINVITRIM 188
Query: 180 GLILTSMAIQMIINGIKGAF 199
GLIL ++ I+ I NG++ F
Sbjct: 189 GLILGALGIEFIANGLRNLF 208
>sp|Q58382|Y972_METJA HYPOTHETICAL PROTEIN MJ0972 >gi|2128609|pir||D64421 hypothetical
protein MJ0972 - Methanococcus jannaschii
>gi|1591635|gb|AAB98977.1| (U67540) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 228
Score = 134 bits (333), Expect = 1e-30
Identities = 73/208 (35%), Positives = 124/208 (59%), Gaps = 12/208 (5%)
Query: 2 LEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALV 61
+++L + +V LF +P+G +PI + ++R + +K I+ V LL FAL
Sbjct: 17 MDILNFYIYGFVSLFITIDPIGLIPIVHSLTYPYPKEQRIRIIKKAIISSTVVLLLFALF 76
Query: 62 GKWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVK------IDEEDVTLEEVAVIP 115
G +IF +FG ++DAF +AGGILLF++ +ML ++ K +D ED+ + + +P
Sbjct: 77 GNYIFGYFGITIDAFRVAGGILLFKIAWDMLHAEIPKTKHKPDERLDLEDI--DSIVYVP 134
Query: 116 LAIPLISGPGAITTVMLYMTRE----SPPIVIATIIAIGISVYIILASGNKIIEKLGRVG 171
LAIPLISGPGAITT M+ +++ +V+ +I++ + IIL+ + II ++ G
Sbjct: 135 LAIPLISGPGAITTTMILISKTQSILEKGVVVLSILSAMLVSGIILSLTDFIIRRVNIYG 194
Query: 172 IKVTTRMMGLILTSMAIQMIINGIKGAF 199
I R+MGL+L ++++Q+I GI G +
Sbjct: 195 INAFVRIMGLLLVAISVQIIFTGIVGLY 222
>sp|P25743|YCHE_ECOLI HYPOTHETICAL 23.5 KD PROTEIN IN ADHE-OPPA INTERGENIC REGION
>gi|7447530|pir||E64871 probable membrane protein ychE -
Escherichia coli >gi|1787494|gb|AAC74324.1| (AE000222)
putative channel protein [Escherichia coli K12]
>gi|4210346|emb|CAA42090.1| (X59501) hypothetical 23.5
kDa protein in adhE-opaA intergenic region [Escherichia
coli]
Length = 215
Score = 127 bits (317), Expect = 7e-29
Identities = 69/196 (35%), Positives = 116/196 (58%), Gaps = 8/196 (4%)
Query: 12 YVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFGS 71
++GLFA+ NPVG +P+F+ + S+ R++ +++V + L +G I + FG
Sbjct: 15 FIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWISLFLGDTILQLFGI 74
Query: 72 SVDAFAIAGGILLFRMGMEMLSGKLSSVKIDE----EDVTLEEVAVIPLAIPLISGPGAI 127
S+D+F IAGGIL+ + M M+SGKL K ++ E E + V+PLA+PL++GPGAI
Sbjct: 75 SIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAI 134
Query: 128 TTVMLYMTR-ESPPIVIATIIAI---GISVYIILASGNKIIEKLGRVGIKVTTRMMGLIL 183
++ +++ TR S + +AI + + + ++ L + GI V TR+MGL+L
Sbjct: 135 SSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLL 194
Query: 184 TSMAIQMIINGIKGAF 199
++ I+ I+ GIKG F
Sbjct: 195 MALGIEFIVTGIKGIF 210
>emb|CAC11168.1| (AL445063) hypothetical membrane protein [Thermoplasma acidophilum]
Length = 213
Score = 125 bits (312), Expect = 3e-28
Identities = 61/203 (30%), Positives = 118/203 (58%), Gaps = 9/203 (4%)
Query: 2 LEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALV 61
+ ++ ++V LFA+ NP+GA+P+ + V + D V +++ + L +F L+
Sbjct: 1 MNLILYLVTVFVALFAMVNPIGALPVLVSVTEGYSKDDFERVVRYAAMSEALMLFSFMLI 60
Query: 62 GKWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKI----DEEDVTLEEVAVIPLA 117
G +IF+ G +++ F +AGG+LLF++ +ML G+ S+ K+ EE + + + P+
Sbjct: 61 GIYIFEVLGININDFKVAGGVLLFKVAFDMLQGRTSTTKLTPAETEESIERTSIGIAPIG 120
Query: 118 IPLISGPGAITTVMLYMTRESP--PIVIATIIAIGISV---YIILASGNKIIEKLGRVGI 172
PL++GPG+IT ++Y S P IA +I++ + V Y IL + + + LG+ G
Sbjct: 121 TPLLAGPGSITAAIIYFNSYSVNIPEKIAVVISVSLVVVISYFILHYSSVLFKYLGKTGS 180
Query: 173 KVTTRMMGLILTSMAIQMIINGI 195
+ +R+MGL+L ++A+ ++ G+
Sbjct: 181 LIISRIMGLLLAAIAVDFMVTGL 203
>sp|O32244|YVBG_BACSU HYPOTHETICAL 22.6 KD PROTEIN IN OPUCA-ENO INTERGENIC REGION
>gi|7447532|pir||F70029 conserved hypothetical protein
yvbG - Bacillus subtilis >gi|2635898|emb|CAB15390.1|
(Z99121) similar to hypothetical proteins [Bacillus
subtilis]
Length = 211
Score = 115 bits (285), Expect = 4e-25
Identities = 69/200 (34%), Positives = 106/200 (52%), Gaps = 9/200 (4%)
Query: 11 LYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFG 70
+++ LFA++NP+G VPIF+ + +R +A K +I L F + G IFK F
Sbjct: 9 VFISLFAVSNPIGNVPIFLTLTEGYTAAERKAIARKAAILSFFILAAFLVFGHLIFKLFD 68
Query: 71 SSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLE-----EVAVIPLAIPLISGPG 125
++ A +AGGI +F + +L+ K S V+ D E +++V PL+IP+I+GPG
Sbjct: 69 INIHALRVAGGIFIFGIAYNLLNAKESHVQSLHHDEHKESKEKADISVTPLSIPIIAGPG 128
Query: 126 AITTVMLYMTRESP----PIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGL 181
I TVM S V+ I A+ ++ I KLG+ + V TR+MGL
Sbjct: 129 TIATVMSLSAGHSGIGHYAAVMIGIAAVIALTFLFFHYSAFISSKLGKTEMNVITRLMGL 188
Query: 182 ILTSMAIQMIINGIKGAFGI 201
IL +A+ MI G+KG F +
Sbjct: 189 ILAVVAVGMIGAGLKGMFPV 208
>sp|O66819|Y540_AQUAE HYPOTHETICAL PROTEIN AQ_540 >gi|7447533|pir||G70348 conserved
hypothetical protein aq_540 - Aquifex aeolicus
>gi|2983179|gb|AAC06780.1| (AE000694) hypothetical
protein [Aquifex aeolicus]
Length = 214
Score = 114 bits (283), Expect = 7e-25
Identities = 59/204 (28%), Positives = 115/204 (55%), Gaps = 12/204 (5%)
Query: 5 LKTFAVLYV----GLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFAL 60
++ F VL+V L AI NP +VP+ + +++ + ++ +A K S+ L F +
Sbjct: 6 MEEFGVLFVKAFLSLLAIMNPFSSVPVVISLMNEYSKEEIRVIALKASVYAFFILTFFLI 65
Query: 61 VGKWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTL----EEVAVIPL 116
G +F+F G ++ AF + GGILLF + + ++ G+++ K ++ + +A+IPL
Sbjct: 66 SGDLLFRFMGITLPAFKVGGGILLFLIALNLVQGEVTKEKGKAHEIEAALRRDNIALIPL 125
Query: 117 AIPLISGPGAITTVMLYM----TRESPPIVIATIIAIGISVYIILASGNKIIEKLGRVGI 172
A+PL++GPG+ITTV++ T E + I + +++ + LGR GI
Sbjct: 126 AMPLLAGPGSITTVLVLRGYLNTLEGKVALFCAIFLSSFTAFVVYSLSTFFYRVLGRTGI 185
Query: 173 KVTTRMMGLILTSMAIQMIINGIK 196
+ TR+ G++L ++++Q +++G+K
Sbjct: 186 NLITRISGILLLAISVQFVVDGLK 209
>sp|P57355|Y267_BUCAI HYPOTHETICAL PROTEIN BU267 >gi|10038942|dbj|BAB12977.1| (AP001118)
hypothetical protein [Buchnera sp. APS]
Length = 215
Score = 111 bits (276), Expect = 5e-24
Identities = 62/203 (30%), Positives = 112/203 (54%), Gaps = 8/203 (3%)
Query: 5 LKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKW 64
L + ++GL A+ NP+G +PIF + ++ + +R + + +V + LL G
Sbjct: 8 LSIYIKFFIGLCALVNPIGMIPIFTTMTNNQSFLERKKTNIVANFSVSLILLISLFFGSN 67
Query: 65 IFKFFGSSVDAFAIAGGILLFRMGMEMLSGK----LSSVKIDEEDVTLEEVAVIPLAIPL 120
I FG S+++F IAGGIL+ + M+SG+ + + K +E+ ++ ++V+PLA+PL
Sbjct: 68 ILNIFGISINSFRIAGGILIISIAFSMISGQFIKTIKTKKETKEENKIDNISVVPLAMPL 127
Query: 121 ISGPGAITTVMLYMTRESP----PIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTT 176
I+GPGAI++ +++ T S + I ++ + +++ LG GI + T
Sbjct: 128 IAGPGAISSTIVWSTYYSSWANLFLCSLVIFLFSFVCWLCFEAAPYVVQILGNTGINIIT 187
Query: 177 RMMGLILTSMAIQMIINGIKGAF 199
R+MGL+L S+ I+ I GI F
Sbjct: 188 RIMGLLLMSLGIEFISTGIGAIF 210
>pir||F75285 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460155|gb|AAF11889.1|AE002065_6 (AE002065)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 217
Score = 111 bits (274), Expect = 8e-24
Identities = 62/201 (30%), Positives = 113/201 (55%), Gaps = 9/201 (4%)
Query: 3 EVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVG 62
EV+ ++ + I +PVG P+F+ + ++ +A K ++ + F L G
Sbjct: 5 EVITLSYRTFLTMLVIMDPVGLAPMFIALARDRPAFEKKRLALKATLVAGGIIFVFGLFG 64
Query: 63 KWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVK----IDEEDVTLEEVAVIPLAI 118
+ + + G S+ AF IAGGILLF + ++M+S + S+ + + E E+++V PLAI
Sbjct: 65 RALLEHLGISLSAFRIAGGILLFMVALDMVSARQSATRETPEEEREAQEREDISVFPLAI 124
Query: 119 PLISGPGAITTVMLY--MTRESPPIVIATIIAIGISV---YIILASGNKIIEKLGRVGIK 173
PLI+GPG + ++M+ +P ++ A + GI + Y+ L N+I + LG G+
Sbjct: 125 PLIAGPGTLASIMIQTNAAHGNPILMFAVFLVTGIVLALCYLALRLSNQIAKALGLTGVN 184
Query: 174 VTTRMMGLILTSMAIQMIING 194
V TR++G++L ++A+Q I +G
Sbjct: 185 VVTRVLGVLLGALAVQYIADG 205
>pir||E81093 conserved hypothetical protein NMB1354 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226598|gb|AAF41728.1| (AE002483) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 217
Score = 109 bits (269), Expect = 3e-23
Identities = 61/203 (30%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 11 LYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFG 70
L V + NP A+ +++ + + + +R +VA ++ V + FAL+G + K G
Sbjct: 10 LIVAFLVLINPFSALSLYLDLTNGHSTKERRKVARTAAVAVFAVIAVFALIGGTLLKVLG 69
Query: 71 SSVDAFAIAGGILLFRMGMEMLSGKLSSVK--IDEEDVTLE--------EVAVIPLAIPL 120
SV +F + GGIL+ + + M++G + K + + T + +AV+P+AIP+
Sbjct: 70 ISVGSFQVGGGILVLLIAISMMNGNDNPAKQNLGAQPETGQARPARNAGAIAVVPIAIPI 129
Query: 121 ISGPGAITTVMLYMTRESPPIVIATIIAIGISV----YIILASGNKIIEKLGRVGIKVTT 176
GPG I+TV++Y + IA IIA G+ V Y IL K+ LG G+ +
Sbjct: 130 TIGPGGISTVIIYASAAKTYGDIALIIAAGLVVSAICYAILIVAGKVSRLLGATGLTILN 189
Query: 177 RMMGLILTSMAIQMIINGIKGAF 199
R+MG++L ++++++I++G+K F
Sbjct: 190 RIMGMMLAAVSVEIIVSGLKTIF 212
>sp|P46851|YHGN_ECOLI HYPOTHETICAL 21.5 KDA PROTEIN IN ASD-GNTU INTERGENIC REGION (O197)
>gi|7447529|pir||E65139 hypothetical protein b3434 -
Escherichia coli (strain K-12) >gi|606369|gb|AAA58232.1|
(U18997) ORF_o197 [Escherichia coli]
>gi|1789842|gb|AAC76459.1| (AE000420) orf, hypothetical
protein [Escherichia coli K12]
Length = 197
Score = 108 bits (268), Expect = 4e-23
Identities = 64/190 (33%), Positives = 105/190 (54%), Gaps = 16/190 (8%)
Query: 15 LFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFGSSVD 74
L I +P+G +PIFM V+ H P +R + + + L+ +L F G+ I F +
Sbjct: 11 LILIMDPLGNLPIFMSVLKHTEPKRRRAIMVRELLIALLVMLVFLFAGEKILAFLSLRAE 70
Query: 75 AFAIAGGILLFRMGMEML----SGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAITTV 130
+I+GGI+LF + ++M+ SG S + EE ++PLAIPL++GP + T+
Sbjct: 71 TVSISGGIILFLIAIKMIFPSASGNSSGLPAGEEPF------IVPLAIPLVAGPTILATL 124
Query: 131 MLYMTRESP----PIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGLILTSM 186
ML ++ + P +VIA ++A G ++IL + + LG G+ R+MGLIL M
Sbjct: 125 ML-LSHQYPNQMGHLVIALLLAWG-GTFVILLQSSLFLRLLGEKGVNALERLMGLILVMM 182
Query: 187 AIQMIINGIK 196
A QM ++GI+
Sbjct: 183 ATQMFLDGIR 192
>pir||A81849 conserved hypothetical protein NMA1566 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380207|emb|CAB84793.1| (AL162756) conserved
hypothetical protein [Neisseria meningitidis Z2491]
Length = 237
Score = 108 bits (268), Expect = 4e-23
Identities = 61/203 (30%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 11 LYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFG 70
L V + NP A+ +++ + + + +R +VA ++ V + FAL+G + K G
Sbjct: 30 LIVAFLVLINPFSALSLYLDLTNGHSTKERRKVARTAAVAVFAVIAVFALIGGTLLKVLG 89
Query: 71 SSVDAFAIAGGILLFRMGMEMLSGKLSSVK--IDEEDVTLE--------EVAVIPLAIPL 120
SV +F + GGIL+ + + M++G + K + + T + +AV+P+AIP+
Sbjct: 90 ISVGSFQVGGGILVLLIAISMMNGNDNPAKQNLGAQPETGQVRPARNAGAIAVVPIAIPI 149
Query: 121 ISGPGAITTVMLYMTRESPPIVIATIIAIGISV----YIILASGNKIIEKLGRVGIKVTT 176
GPG I+TV++Y + IA IIA G+ V Y IL K+ LG G+ +
Sbjct: 150 TIGPGGISTVIIYASAAKTYGDIALIIAAGLVVSAICYAILIVAGKVSRLLGATGLTILN 209
Query: 177 RMMGLILTSMAIQMIINGIKGAF 199
R+MG++L ++++++I++G+K F
Sbjct: 210 RIMGMMLAAVSVEIIVSGLKMIF 232
>gi|11499694 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3915499|sp|O28169|YL11_ARCFU HYPOTHETICAL PROTEIN
AF2111 >gi|7447531|pir||G69513 conserved hypothetical
protein AF2111 - Archaeoglobus fulgidus
>gi|2648415|gb|AAB89138.1| (AE000958) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 213
Score = 102 bits (253), Expect = 2e-21
Identities = 56/198 (28%), Positives = 107/198 (53%), Gaps = 7/198 (3%)
Query: 5 LKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKW 64
L F + LF I +P G +PIF+ + + + R +++++ +I + L + G
Sbjct: 7 LSFFFASFTTLFIIIDPPGNLPIFIALTERFSDEYREKISKRATIIAFLILFITMVTGGK 66
Query: 65 IFKFFGSSVDAFAIAGGILLFRMGMEMLSG---KLSSVKIDEEDVTLEEVAVIPLAIPLI 121
I +FG S+ + IAGGILLF +++L G + + + EE + ++ +AV PLA+PL
Sbjct: 67 ILDYFGVSISSLKIAGGILLFISSVDILLGGTRREAYKRRAEESIDVDSIAVFPLALPLY 126
Query: 122 SGPGAITTVMLYMTRESPPIVIATIIAIGISVYIILASGN----KIIEKLGRVGIKVTTR 177
+GPGAIT ++ ++ ++ ++ VY I+ + II LGR G + R
Sbjct: 127 TGPGAITAGIVLYSQAGDVVMKLLVVLSAALVYSIVRLSHIYSAPIIRLLGRSGADIAAR 186
Query: 178 MMGLILTSMAIQMIINGI 195
++ + L ++A++ + +G+
Sbjct: 187 ILAIFLAAIAVEFVFDGL 204
>emb|CAC01363.1| (AL390975) putative integral membrane protein [Streptomyces
coelicolor A3(2)]
Length = 201
Score = 102 bits (251), Expect = 4e-21
Identities = 62/192 (32%), Positives = 107/192 (55%), Gaps = 8/192 (4%)
Query: 8 FAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFK 67
F L++ LF I +P G PIF+ + S + +A + + F L+G I
Sbjct: 7 FGSLFLTLFVIMDPPGITPIFLALTSGRPGKVQKRMALQAVCVAGGVITVFGLLGHQILD 66
Query: 68 FFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAI 127
+ SV A IAGG+LL + +++L+GK K +DV VA++PL +PL++GPGAI
Sbjct: 67 YLHVSVPALMIAGGLLLLLIALDLLTGKTDEPK-QTKDVN---VALVPLGMPLLAGPGAI 122
Query: 128 TTVMLYMTRESPPI----VIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGLIL 183
+V+L + + V A I+AI + +++++ II + G+ + TR+ G++L
Sbjct: 123 VSVILAVQKADSVTTQVSVWAAILAIHVVLWLVMRYSLLIIRVIKDGGVVLVTRLAGMML 182
Query: 184 TSMAIQMIINGI 195
+++A+Q IING+
Sbjct: 183 SAIAVQQIINGV 194
>dbj|BAA16035.1| (D90852) ORF_ID:o250#8~similar to [SwissProt Accession Number
P25743] [Escherichia coli] >gi|4062810|dbj|BAA36122.1|
(D90759) Hypothetical 19.7 kd protein in adhE-oppA
intergenic region. [Escherichia coli]
Length = 182
Score = 100 bits (247), Expect = 1e-20
Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 8/177 (4%)
Query: 31 VVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFGSSVDAFAIAGGILLFRMGME 90
+ S+ R++ +++V + L +G I + FG S+D+F IAGGIL+ + M
Sbjct: 1 MTSYQTAAARNKTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMS 60
Query: 91 MLSGKLSSVKIDE----EDVTLEEVAVIPLAIPLISGPGAITTVMLYMTR-ESPPIVIAT 145
M+SGKL K ++ E E + V+PLA+PL++GPGAI++ +++ TR S +
Sbjct: 61 MISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGF 120
Query: 146 IIAI---GISVYIILASGNKIIEKLGRVGIKVTTRMMGLILTSMAIQMIINGIKGAF 199
+AI + + + ++ L + GI V TR+MGL+L ++ I+ I+ GIKG F
Sbjct: 121 FVAIALFALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIF 177
>pir||A72482 hypothetical protein APE2497 - Aeropyrum pernix (strain K1)
>gi|5106202|dbj|BAA81513.1| (AP000064) 199aa long
hypothetical protein [Aeropyrum pernix]
Length = 199
Score = 96.7 bits (237), Expect = 2e-19
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 15 LFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFGSSVD 74
LF + +PVG P +V+ +R + + L+ F L+G + G S+D
Sbjct: 14 LFIVLDPVGVSPYVASIVARRPEGERERIVRTALASAGAILVAFTLIGVAVLDILGVSMD 73
Query: 75 AFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAITTVMLYM 134
F +A G+LL + + L +KI + + +EVA+ PLA PL++GPG+I TVM M
Sbjct: 74 EFKVAAGLLL----LIYATADLFEIKIGYSEPSGDEVAIFPLATPLLAGPGSIATVMYIM 129
Query: 135 TRESPPIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGLILTSMAIQMIING 194
+ + I+ + Y IL + K++ LGR G + + ++ A+ +I +G
Sbjct: 130 GSSGIAVALIAILVNLVLAYPILHASLKLVRLLGRHGSLLVAKFTAFLMVGFAVSIIFDG 189
Query: 195 IKG 197
++G
Sbjct: 190 LRG 192
>emb|CAC12198.1| (AL445066) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 202
Score = 96.0 bits (235), Expect = 3e-19
Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 9/193 (4%)
Query: 8 FAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFK 67
F +++ LF + +P G++ +F + + ++ + + L+ FAL G++I
Sbjct: 7 FLKIFIPLFIVIDPFGSLVLFTSMTYNFNESEKLRATKDAVFYGGIILVLFALAGEYIIY 66
Query: 68 FFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAI 127
FFG S++A +AGGI+L M +EM+ + + K ++ ++ ++P A P+++GPGAI
Sbjct: 67 FFGISIEALEMAGGIILLLMAVEMIM-EGNRPKSSGSEIVDYDIGIVPFATPMLAGPGAI 125
Query: 128 TTVMLYMTRESPPIV--IATIIAIGI---SVYIILASGNKIIEKLGRVGIKVTTRMMGLI 182
+ V++ M PI+ I TII+I I VYI + + + +G +K +R+ GL+
Sbjct: 126 SLVIILM---KGPIIAKIYTIISIAIIFAMVYIFFKWSSVVSKFIGAKVMKAISRIFGLL 182
Query: 183 LTSMAIQMIINGI 195
L AIQ I+ I
Sbjct: 183 LAGFAIQYFIDAI 195
>sp|P57524|Y449_BUCAI HYPOTHETICAL PROTEIN BU449 >gi|10039113|dbj|BAB13147.1| (AP001119)
hypothetical protein [Buchnera sp. APS]
Length = 182
Score = 95.6 bits (234), Expect = 4e-19
Identities = 54/182 (29%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 20 NPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFGSSVDAFAIA 79
+P+G +PIFM ++ HL +R V + I L+ +L F VG+ I + +I+
Sbjct: 2 DPLGNLPIFMTILKHLDVKRRRIVVIREMIIALIVMLLFLFVGEKILIILNLKTETVSIS 61
Query: 80 GGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAITTVML--YMTRE 137
GG++LF + ++M+ S + E + EE ++PLAIPL++GP + T+ML +
Sbjct: 62 GGVILFLIAIKMI---FPSEDNNNEISSSEEPFLVPLAIPLVAGPSLLATLMLLSHQYLH 118
Query: 138 SPPIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGLILTSMAIQMIINGIKG 197
++ +++ IIL S + ++ G G+ R+MGL+L ++ QM ++GI+
Sbjct: 119 HMFYLVGSLLISWFFTVIILLSSSLFLKLFGSKGVNALERLMGLVLIMLSTQMFLDGIRA 178
Query: 198 AF 199
F
Sbjct: 179 WF 180
>gb|AAK40918.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 202
Score = 94.0 bits (230), Expect = 1e-18
Identities = 57/186 (30%), Positives = 96/186 (50%), Gaps = 8/186 (4%)
Query: 15 LFAITNPVGAVPIFMGVVSHLAPDKRHEVA-----EKVSITVLVTLLTFALVGKWIFKFF 69
L+AI +P+ +P + + + +++++ K+SI V V LL F+++G + F
Sbjct: 14 LYAIMDPLSILPYLIALYEEFNRNSQNKISWRFLVNKLSIAVTVLLLFFSILGGPLLAFL 73
Query: 70 GSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAITT 129
G SV A I GGI+L +G++ L G + +EE + P+A PLI GPG +T
Sbjct: 74 GISVSALEIGGGIILVYLGVDTLGGFQQLKFLSSR---IEEAIITPIATPLIVGPGTMTG 130
Query: 130 VMLYMTRESPPIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGLILTSMAIQ 189
++ + I+I + + VY+ L G II LG G R M +I+ + +Q
Sbjct: 131 LITLSVSNNLIILILGSLLAALLVYLSLLLGPIIIRILGNTGTVAVGRFMAIIIAAFGVQ 190
Query: 190 MIINGI 195
+II+GI
Sbjct: 191 LIIDGI 196
>emb|CAB57693.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 202
Score = 94.0 bits (230), Expect = 1e-18
Identities = 57/186 (30%), Positives = 96/186 (50%), Gaps = 8/186 (4%)
Query: 15 LFAITNPVGAVPIFMGVVSHLAPDKRHEVA-----EKVSITVLVTLLTFALVGKWIFKFF 69
L+AI +P+ +P + + + +++++ K+SI V V LL F+++G + F
Sbjct: 14 LYAIMDPLSILPYLIALYEEFNRNSQNKISWRFLVNKLSIAVTVLLLFFSILGGPLLAFL 73
Query: 70 GSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAITT 129
G SV A I GGI+L +G++ L G + +EE + P+A PLI GPG +T
Sbjct: 74 GISVSALEIGGGIILVYLGVDTLGGFQQLKFLSSR---IEEAIITPIATPLIVGPGTMTG 130
Query: 130 VMLYMTRESPPIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGLILTSMAIQ 189
++ + I+I + + VY+ L G II LG G R M +I+ + +Q
Sbjct: 131 LITLSVSNNLIILILGSLLAALLVYLSLLLGPIIIRILGNTGTVAVGRFMAIIIAAFGVQ 190
Query: 190 MIINGI 195
+II+GI
Sbjct: 191 LIIDGI 196
>pir||H83038 hypothetical protein PA4857 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951129|gb|AAG08242.1|AE004899_3
(AE004899) hypothetical protein [Pseudomonas aeruginosa]
Length = 197
Score = 93.6 bits (229), Expect = 2e-18
Identities = 51/191 (26%), Positives = 102/191 (52%), Gaps = 7/191 (3%)
Query: 11 LYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFG 70
+Y+ + + +P + F+ + P R +A +V++ L+ + L G++IF FG
Sbjct: 7 VYLKMLVLYSPFFVLSCFISLSRGFGPRDRKRMAWRVALAALIASVALYLFGRYIFILFG 66
Query: 71 SSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAITTV 130
+ DAF I G +LF + M G+ + + D ++V ++PL IPL GPG I +
Sbjct: 67 ITADAFRIGAGSVLFISALGMAQGRAAV----QSDNVQQDVTIVPLTIPLTVGPGTIGAL 122
Query: 131 MLYMTRESPPIVIATIIAIGISVYII---LASGNKIIEKLGRVGIKVTTRMMGLILTSMA 187
++ + + +++AI ++ + L ++I LG G+++ +R+MGL + ++A
Sbjct: 123 LVMGVGQGWEAKLISLVAIFLACLTLGTTLYLSDRIERLLGDQGLQIVSRLMGLFVCALA 182
Query: 188 IQMIINGIKGA 198
Q+I+ G+KG+
Sbjct: 183 AQIIVTGLKGS 193
>sp|Q56068|MARC_SALTY MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARC >gi|7447539|pir||T11755
conserved hypothetical protein 221 - Salmonella
typhimurium >gi|1293697|gb|AAC44975.1| (U54468) ORF221
[Salmonella typhimurium]
Length = 221
Score = 92.1 bits (225), Expect = 4e-18
Identities = 55/216 (25%), Positives = 105/216 (48%), Gaps = 24/216 (11%)
Query: 1 MLEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFAL 60
M+++ K + V L + NP+ V +F+G+ ++ +R+ + S+ V ++
Sbjct: 1 MMDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQSYMASVYVFAIMMVAYY 60
Query: 61 VGKWIFKFFGSSVDAFAIAGGILLFRMGMEML--------SGKLSSVKIDEEDVTLEEVA 112
G+ + FG S+ IAGG+++ +G ML S + S + D +A
Sbjct: 61 AGQLVMNTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAHESPEAKSKSEELADEPTANIA 120
Query: 113 VIPLAIPLISGPGAITTVML-------------YMTRESPPIVIATIIAIGISVYIILAS 159
+PLA+P +GPG I ++ ++ +PPI+ +A+ + ++ L S
Sbjct: 121 FVPLAMPSTAGPGTIAMIISSASTVRHGGEFPDWVIMVAPPII---FLAVAVILWGCLRS 177
Query: 160 GNKIIEKLGRVGIKVTTRMMGLILTSMAIQMIINGI 195
I+ +G+ GI+ +R+MG +L M +Q IING+
Sbjct: 178 SGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGV 213
>sp|P31123|MARC_ECOLI MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARC >gi|7447540|pir||D64907
membrane protein ydeB - Escherichia coli
>gi|1787809|gb|AAC74602.1| (AE000250) orf, hypothetical
protein [Escherichia coli K12]
>gi|3132835|gb|AAC16396.1| (M96235) multiple antibiotic
resistance protein [Escherichia coli]
Length = 221
Score = 90.5 bits (221), Expect = 1e-17
Identities = 56/216 (25%), Positives = 104/216 (47%), Gaps = 24/216 (11%)
Query: 1 MLEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFAL 60
ML++ K + V L + NP+ V +F+G+ ++ +R+ + S+ V ++
Sbjct: 1 MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQSLMASVYVFAIMMVAYY 60
Query: 61 VGKWIFKFFGSSVDAFAIAGGILLFRMGMEML--------SGKLSSVKIDEEDVTLEEVA 112
G+ + FG S+ IAGG+++ +G ML S + S + ED +A
Sbjct: 61 AGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSPEAKSKSEELEDEPSANIA 120
Query: 113 VIPLAIPLISGPGAITTVML-------------YMTRESPPIVIATIIAIGISVYIILAS 159
+PLA+P +GPG I ++ ++ +PP++ + + ++ L S
Sbjct: 121 FVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAPPLI---FFLVAVILWGSLRS 177
Query: 160 GNKIIEKLGRVGIKVTTRMMGLILTSMAIQMIINGI 195
I+ +G+ GI+ +R+MG +L M +Q IINGI
Sbjct: 178 SGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGI 213
>sp|Q9Z6P9|YA10_CHLPN HYPOTHETICAL PROTEIN CPN1010 >gi|7447541|pir||F72008 CT852
hypothetical protein - Chlamydophila pneumoniae (strain
CWL029) >gi|4377340|gb|AAD19147.1| (AE001681) CT852
hypothetical protein [Chlamydophila pneumoniae CWL029]
Length = 202
Score = 88.5 bits (216), Expect = 5e-17
Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 11/202 (5%)
Query: 4 VLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGK 63
+L ++L+ LF + G++P+F+ ++ + + K+ V + + L L+ F G+
Sbjct: 3 ILLNLSLLFYVLF---DSPGSIPVFVALLKNFSRKKQQRVILRECLFALGALILFVTFGR 59
Query: 64 WIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISG 123
F+F S+ AF I GG LLF + ++M+ + ++D + E PLA P+I+G
Sbjct: 60 SFFQFLDISLYAFQIIGGFLLFTVSIKMMLAPMPEKA--KDDTSKTEPIFFPLAFPVITG 117
Query: 124 PGAITTVMLYMTR---ESPPIVIATIIAIGISVYIILASGNKIIEKL-GRVGIKVTTRMM 179
P IT ++ YM I A IIA S++ +L S ++L G G+ R+
Sbjct: 118 PAVITALLSYMEEGIYSREIIFTAMIIAWAFSLFTLLCS--SFFDRLFGNFGLLALERLF 175
Query: 180 GLILTSMAIQMIINGIKGAFGI 201
G+ L M++ +++ GI AF I
Sbjct: 176 GIALLLMSVNLMLKGISIAFNI 197
>pir||A81533 conserved hypothetical protein CP0843 [imported] - Chlamydophila
pneumoniae (strain AR39) >gi|7189754|gb|AAF38633.1|
(AE002243) conserved hypothetical protein [Chlamydophila
pneumoniae AR39] >gi|8979383|dbj|BAA99217.1| (AP002548)
CT852 hypothetical protein [Chlamydophila pneumoniae
J138]
Length = 202
Score = 88.5 bits (216), Expect = 5e-17
Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 11/202 (5%)
Query: 4 VLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGK 63
+L ++L+ LF + G++P+F+ ++ + + K+ V + + L L+ F G+
Sbjct: 3 ILLNLSLLFYVLF---DSPGSIPVFVALLKNFSRKKQQRVILRECLFALGALILFVTFGR 59
Query: 64 WIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISG 123
F+F S+ AF I GG LLF + ++M+ + ++D + E PLA P+I+G
Sbjct: 60 SFFQFLDISLYAFQIIGGFLLFTVSIKMMLAPMPEKA--KDDTSKTEPIFFPLAFPVITG 117
Query: 124 PGAITTVMLYMTR---ESPPIVIATIIAIGISVYIILASGNKIIEKL-GRVGIKVTTRMM 179
P IT ++ YM I A IIA S++ +L S ++L G G+ R+
Sbjct: 118 PAVITALLSYMEEGIYSREIIFTAMIIAWAFSLFTLLCS--SFFDRLSGNFGLLALERLF 175
Query: 180 GLILTSMAIQMIINGIKGAFGI 201
G+ L M++ +++ GI AF I
Sbjct: 176 GIALLLMSVNLMLKGISIAFNI 197
>pir||B82531 conserved hypothetical protein XF2666 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107900|gb|AAF85463.1|AE004072_16 (AE004072)
conserved hypothetical protein [Xylella fastidiosa]
Length = 198
Score = 87.0 bits (212), Expect = 1e-16
Identities = 54/184 (29%), Positives = 99/184 (53%), Gaps = 7/184 (3%)
Query: 15 LFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFGSSVD 74
LF I +P+G +P+F+ V+ L ++ V + + LV L+ F GK++ + +
Sbjct: 10 LFLILDPLGNIPVFLSVLKPLPAQRQRVVLARELLIALVVLMGFLWGGKYVLELMHLRQE 69
Query: 75 AFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAITTVMLYM 134
+ +IAGGI+LF +G+ M+ + + ++ E ++PLAIPL++GP + VML
Sbjct: 70 SVSIAGGIVLFLIGIRMIFPRPEGLM---GEIPEGEPFIVPLAIPLVAGPSGMAAVMLMG 126
Query: 135 TRESPPI---VIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGLILTSMAIQMI 191
+ E + A ++A G IL S + LG + R+MG++L ++++QM
Sbjct: 127 SNEPARLWDWNWALLLAWG-GAAAILFSAPLLYTLLGHRVLTALERLMGMLLVAISVQMF 185
Query: 192 INGI 195
++GI
Sbjct: 186 MDGI 189
>pir||H82995 conserved hypothetical protein PA5205 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951511|gb|AAG08590.1|AE004933_6 (AE004933)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 233
Score = 87.0 bits (212), Expect = 1e-16
Identities = 60/210 (28%), Positives = 104/210 (48%), Gaps = 23/210 (10%)
Query: 8 FAVLYVGLFAI---TNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKW 64
F + +GL A+ NP+ +V + +G+ L P +R+ K S+ V + +L G
Sbjct: 5 FHHVLIGLLAVLPVANPLTSVSLLLGLGGSLPPAERNRQIFKASLYVALIMLVSFYGGSL 64
Query: 65 IFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLS--------SVKIDEEDVT--LEEVAVI 114
+ + FG S+ IAGG+++ +G ML + + DEE +T +++ +
Sbjct: 65 VMQVFGISIPGLRIAGGLIVAYIGFTMLFPATTPDETEVQHDLLSDEEKITPHFRDLSFV 124
Query: 115 PLAIPLISGPGAITTVM-----LYMTRESPPI-----VIATIIAIGISVYIILASGNKII 164
PLA+P +GPG I V+ L T S P+ I + + +I L S +I+
Sbjct: 125 PLALPGTAGPGTIALVVSSASTLQSTYGSIPLFIHLAAITVTLLTALIFWIALQSSGRIM 184
Query: 165 EKLGRVGIKVTTRMMGLILTSMAIQMIING 194
+ LG GI +R++G +L +M +Q +ING
Sbjct: 185 KFLGESGIDAISRVVGFLLVAMGVQFVING 214
>sp|O84860|Y852_CHLTR HYPOTHETICAL PROTEIN CT852 >gi|7447542|pir||E71462 hypothetical
protein CT852 - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329325|gb|AAC68449.1| (AE001358)
YhgN family [Chlamydia trachomatis]
Length = 204
Score = 85.4 bits (208), Expect = 4e-16
Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 7/203 (3%)
Query: 1 MLEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFAL 60
ML L +L+ LF N +G++P+F+ ++ + + K+ + + SI L+ LL F
Sbjct: 1 MLHSLFRLTLLFYALF---NALGSLPVFIALLKNFSFKKQQHIILRESIFALLLLLLFVT 57
Query: 61 VGKWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPL 120
G+ F+ G + AF G +LL + ++M+ + E D +E PLA P+
Sbjct: 58 FGRGFFRLLGIILPAFQFTGSLLLGSIAIDMMKALPPQTETLERDK--DEPIFFPLAFPV 115
Query: 121 ISGPGAITTVMLYMTRESPP--IVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRM 178
I+GP IT+ + +M P IV+ I+ + I L + I G++G+ R+
Sbjct: 116 ITGPAMITSTLGHMEEGIFPKKIVLGAIVLAWLFSLITLLLSSSINRLFGQMGLLALERL 175
Query: 179 MGLILTSMAIQMIINGIKGAFGI 201
G+ L MA +++ + AF I
Sbjct: 176 FGISLALMAGNLMLKALSTAFNI 198
>pir||H81724 conserved hypothetical protein TC0241 [imported] - Chlamydia
muridarum (strain Nigg) >gi|7190281|gb|AAF39112.1|
(AE002291) conserved hypothetical protein [Chlamydia
muridarum]
Length = 204
Score = 81.5 bits (198), Expect = 6e-15
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 7/203 (3%)
Query: 1 MLEVLKTFAVLYVGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFAL 60
ML L +L+ LF N +G++P+F+ ++ + K+ + + I L+TL+ F
Sbjct: 1 MLHSLFRLTLLFYALF---NSLGSLPVFVALLKKFSFRKQQRIILRECIFALLTLILFIT 57
Query: 61 VGKWIFKFFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPL 120
G+ F+ S+ AF + GGILL + + M+ K + + D +E PLA P+
Sbjct: 58 FGQGFFRLLEVSLPAFQLTGGILLGSLAINMM--KALPSQEETFDQYEDEPIFYPLAFPV 115
Query: 121 ISGPGAITTVMLYMTRESPP--IVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRM 178
I+GP IT+ + +M P +V+ I+ I L + I G++G+ R+
Sbjct: 116 ITGPATITSTLGHMEEGIFPKELVLGAIMLAWAFSLITLFFSSSINRLFGQMGLLALERL 175
Query: 179 MGLILTSMAIQMIINGIKGAFGI 201
G+ L MA +++ I AF I
Sbjct: 176 FGISLALMAGNLMLKAISTAFNI 198
>pir||E75209 hypothetical protein PAB2220 - Pyrococcus abyssi (strain Orsay)
>gi|5457633|emb|CAB49124.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 202
Score = 80.4 bits (195), Expect = 1e-14
Identities = 55/156 (35%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 46 KVSITVLVTLLTFALVGKWIFK-FFGSSVDAFAIAGGILLFRMGMEML-SGKLSSVKIDE 103
+ +I + LL FA+ GK I + F +DA +AGG +LF++G+E L SG + ++K ++
Sbjct: 43 RANIIGFLLLLIFAVAGKIILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEK 102
Query: 104 EDVTLEEVAVIPLAIPLISGPGAITTVMLYMTRESPPI--VIATIIAIGISVYIILASGN 161
+ L A +P+A PLI+GP AIT + +T E + V AT IAI I+ ++L S
Sbjct: 103 NILAL---AAVPVATPLIAGPAAITAA-ITLTAEYGIVVSVTATFIAIVITAVLMLLS-L 157
Query: 162 KIIEKLGRVGIKVTTRMMGLILTSMAIQMIINGIKG 197
++ + + + VT R++GL + ++ QM+I+G G
Sbjct: 158 YLMRGINKTALSVTIRIIGLFIMAIGAQMMISGAGG 193
>pir||E82960 conserved hypothetical protein PA5486 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951820|gb|AAG08871.1|AE004961_6 (AE004961)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 197
Score = 79.2 bits (192), Expect = 3e-14
Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 7/190 (3%)
Query: 15 LFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFGSSVD 74
+F +T+P G + +F+ + +AP +R VA + L LL F +G+ I G S +
Sbjct: 10 IFLVTDPFGNIAVFLAALKGVAPGRRLRVAFRELAFALGLLLLFLTLGEHILSGLGLSRE 69
Query: 75 AFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAITTVMLYM 134
A IAGGI+LF + M ++ + + D E ++PLA P ++GP A+ ++
Sbjct: 70 ATGIAGGIILFVIAMRLIFPSPQGLLGEVPD---GEPLLVPLATPAVAGPSALAMLITLR 126
Query: 135 TRESPP---IVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGLILTSMAIQMI 191
T P + +A ++A + I+L + + LG G+ R+ G++L +++ M+
Sbjct: 127 TTFDGPLWELYLAVVLAWAATALILLQAA-FLQRFLGPRGLTAIERLAGMLLIMLSVDML 185
Query: 192 INGIKGAFGI 201
++ ++ I
Sbjct: 186 LDNLRSVLHI 195
>sp|O57953|Y214_PYRHO HYPOTHETICAL PROTEIN PH0214 >gi|7447536|pir||D71244 hypothetical
protein PH0214 - Pyrococcus horikoshii
>gi|3256600|dbj|BAA29283.1| (AP000001) 202aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 202
Score = 78.8 bits (191), Expect = 4e-14
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 7/155 (4%)
Query: 46 KVSITVLVTLLTFALVGKWIFK-FFGSSVDAFAIAGGILLFRMGMEMLSGKLSSVKIDEE 104
+ ++ + LL FA+ GK I + F +DA +AGG +LF++G+E L G V I E
Sbjct: 43 RANLIGFILLLLFAVAGKIILQDIFHIELDALRVAGGFVLFKIGLEALEGG-GMVTIKRE 101
Query: 105 DVTLEEVAVIPLAIPLISGPGAITTVMLYMTRESPPIV--IATIIAIGISVYIILASGNK 162
L +A +P+A PLI+GP AIT + +T E IV + T+IAI I+ +++ +
Sbjct: 102 KNIL-ALAAVPVATPLIAGPAAITAA-ITLTAEHGIIVSIVGTLIAIAITAALMMIA-LY 158
Query: 163 IIEKLGRVGIKVTTRMMGLILTSMAIQMIINGIKG 197
++ + + + VT R++GL + ++ QM+I G G
Sbjct: 159 LMRGISKTALSVTIRIIGLFIMAIGAQMMITGAGG 193
>pir||D71256 conserved hypothetical integral membrane protein TP0988 - syphilis
spirochete >gi|3323312|gb|AAC65944.1| (AE001266)
conserved hypothetical integral membrane protein
[Treponema pallidum]
Length = 278
Score = 77.3 bits (187), Expect = 1e-13
Identities = 48/186 (25%), Positives = 93/186 (49%), Gaps = 8/186 (4%)
Query: 15 LFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKFFGSSVD 74
L I +P+G +P+ + V+ + ++ + + + LV +L+F GK F
Sbjct: 93 LLFIIDPIGNIPVVLSVLRTVPAERHTRIIFRELLLGLVLMLSFLFCGKVFLSLFQLETG 152
Query: 75 AFAIAGGILLFRMGMEMLSGKLSSVKIDEEDVTLEEVAVIPLAIPLISGPGAITTVMLYM 134
+AG ++LF +G++M+ ++ T EE ++P+A P+I+GP A TT+++ M
Sbjct: 153 VMKMAGSVILFLVGIKMVFPDQHAL----PSTTEEEPFIVPIATPMIAGPSAFTTLVI-M 207
Query: 135 TRESPPIVIATIIAIGIS---VYIILASGNKIIEKLGRVGIKVTTRMMGLILTSMAIQMI 191
+AT A+ ++ +I+ S + L GI R+ G++L ++IQM
Sbjct: 208 GETKGTSRLATCAALLVAWTLACLIMISAPCLYRLLKEKGITALERITGILLLILSIQMC 267
Query: 192 INGIKG 197
+ G +G
Sbjct: 268 VEGARG 273
>pir||B81315 probable integral membrane protein Cj1111c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968545|emb|CAB73366.1| (AL139077) putative integral
membrane protein [Campylobacter jejuni]
Length = 208
Score = 69.5 bits (167), Expect = 3e-11
Identities = 49/199 (24%), Positives = 96/199 (47%), Gaps = 13/199 (6%)
Query: 13 VGLFAITNPVGAVPIFMGVVSHLAPDKRHEVAEKVSITVLVTLLTFALVGKWIFKF-FGS 71
+ L AI NP G + F+ + L R ++ + T +L F L G + F
Sbjct: 13 ITLLAILNPFGNLTQFLAMSDGLPLMLRKKLFRTILYTAFTIVLVFLLSGPLFMNYIFRV 72
Query: 72 SVDAFAIAGGILLFRMGMEMLSGKLSSVKI---------DEEDVTLEEVAVIPLAIPLIS 122
S+D ++GG++L M ++ L L S KI D +D + ++IP+A P++
Sbjct: 73 SLDDLRVSGGLVLIIMAIKNL---LFSTKIATKDFSSYQDMDDKEILRQSLIPMAFPMLV 129
Query: 123 GPGAITTVMLYMTRESPPIVIATIIAIGISVYIILASGNKIIEKLGRVGIKVTTRMMGLI 182
GPG + +V++ + + ++ I ++I+ I + +G++ + V +R+ +
Sbjct: 130 GPGTLASVIVIAEDGGLDVALGGVMIAFIFMFILFHFAATIEKIVGKLILHVFSRIAQVF 189
Query: 183 LTSMAIQMIINGIKGAFGI 201
+ +M +MII G+K F +
Sbjct: 190 IVAMGFKMIIVGLKDIFNL 208
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.143 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63823859
Number of Sequences: 2977
Number of extensions: 2380013
Number of successful extensions: 7616
Number of sequences better than 1.0e-10: 36
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 7550
Number of HSP's gapped (non-prelim): 37
length of query: 201
length of database: 189,106,746
effective HSP length: 55
effective length of query: 146
effective length of database: 156,189,961
effective search space: 22803734306
effective search space used: 22803734306
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)