BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0864 1265820 1266134 105 !not a gene!
         (105 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G72711 hypothetical protein APE1110 - Aeropyrum pernix (str...    89  1e-17

>pir||G72711 hypothetical protein APE1110 - Aeropyrum pernix (strain K1)
           >gi|5104780|dbj|BAA80095.1| (AP000060) 161aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 161
           
 Score = 88.9 bits (217), Expect = 1e-17
 Identities = 45/72 (62%), Positives = 48/72 (66%)

Query: 32  QPNATALGGPSNLVGVAYLSGTGISGPLCEPLIQPLTKCGNANGSRTSPSAGRPLWALTI 91
           +P A  LGGPSNL        TGI GP   PLIQP T+CG A GS TSP+AG PL ALTI
Sbjct: 9   KPRAMTLGGPSNLETFESFRPTGIRGPWWLPLIQPATRCGKAKGSSTSPTAGNPLCALTI 68

Query: 92  ATGSSFPTYSPA 103
            TGSS PTY PA
Sbjct: 69  ITGSSLPTYLPA 80


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.130    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44480446
Number of Sequences: 2977
Number of extensions: 1955409
Number of successful extensions: 3238
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3237
Number of HSP's gapped (non-prelim): 1
length of query: 105
length of database: 189,106,746
effective HSP length: 52
effective length of query: 53
effective length of database: 157,985,422
effective search space: 8373227366
effective search space used: 8373227366
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 159 (66.3 bits)