BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0865 (PAB0865) DE:Hypothetical protein
(262 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75039 hypothetical protein PAB0865 - Pyrococcus abyssi (st... 531 e-150
pir||F71123 hypothetical protein PH0757 - Pyrococcus horikoshii ... 443 e-123
gb|AAK42153.1| Conserved hypothetical protein [Sulfolobus solfat... 223 2e-57
emb|CAC12540.1| (AL445067) conserved hypothetical protein [Therm... 118 5e-26
>pir||G75039 hypothetical protein PAB0865 - Pyrococcus abyssi (strain Orsay)
>gi|5458725|emb|CAB50212.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 262
Score = 531 bits (1354), Expect = e-150
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MLIGMAIMPHGNEAVYPPDEESKELNKALREIGSQLKEAETYVLISPHNVRLSDHLGIIM 60
MLIGMAIMPHGNEAVYPPDEESKELNKALREIGSQLKEAETYVLISPHNVRLSDHLGIIM
Sbjct: 1 MLIGMAIMPHGNEAVYPPDEESKELNKALREIGSQLKEAETYVLISPHNVRLSDHLGIIM 60
Query: 61 AEHLIPWLPFNDVEVPVEGEYETDRELAELIFKETKENFPIVDINFATLRGRYSRFPLTW 120
AEHLIPWLPFNDVEVPVEGEYETDRELAELIFKETKENFPIVDINFATLRGRYSRFPLTW
Sbjct: 61 AEHLIPWLPFNDVEVPVEGEYETDRELAELIFKETKENFPIVDINFATLRGRYSRFPLTW 120
Query: 121 GEIIPLHFLEKRQIVLLTPAKIERETLIKFGKALARILNNYERKVALVISADHGHAHDEK 180
GEIIPLHFLEKRQIVLLTPAKIERETLIKFGKALARILNNYERKVALVISADHGHAHDEK
Sbjct: 121 GEIIPLHFLEKRQIVLLTPAKIERETLIKFGKALARILNNYERKVALVISADHGHAHDEK 180
Query: 181 GPYGYAKESEEYDKIIVEALKNSNLEMLLELDDEFIAKAKPDSYWSLLIGLGVLKEIPMK 240
GPYGYAKESEEYDKIIVEALKNSNLEMLLELDDEFIAKAKPDSYWSLLIGLGVLKEIPMK
Sbjct: 181 GPYGYAKESEEYDKIIVEALKNSNLEMLLELDDEFIAKAKPDSYWSLLIGLGVLKEIPMK 240
Query: 241 SSLVTYACPTYYGMASALFTKT 262
SSLVTYACPTYYGMASALFTKT
Sbjct: 241 SSLVTYACPTYYGMASALFTKT 262
>pir||F71123 hypothetical protein PH0757 - Pyrococcus horikoshii
>gi|3257165|dbj|BAA29848.1| (AP000003) 262aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 262
Score = 443 bits (1127), Expect = e-123
Identities = 208/261 (79%), Positives = 238/261 (90%)
Query: 1 MLIGMAIMPHGNEAVYPPDEESKELNKALREIGSQLKEAETYVLISPHNVRLSDHLGIIM 60
ML+GMA+MPHGNEAVYPPD+ES++LN+AL+EIG +LK++ETYVLISPHNVR+SD LGIIM
Sbjct: 1 MLVGMAVMPHGNEAVYPPDDESRKLNEALKEIGRRLKDSETYVLISPHNVRISDKLGIIM 60
Query: 61 AEHLIPWLPFNDVEVPVEGEYETDRELAELIFKETKENFPIVDINFATLRGRYSRFPLTW 120
E+LIPWLPFNDV VP E EY+TDR LAE IFKE + FPIVDINFA+ +GRYSRFPLTW
Sbjct: 61 TEYLIPWLPFNDVHVPSESEYKTDRMLAEKIFKEARGRFPIVDINFASAKGRYSRFPLTW 120
Query: 121 GEIIPLHFLEKRQIVLLTPAKIERETLIKFGKALARILNNYERKVALVISADHGHAHDEK 180
GEIIPLHFLEKR+IVLLTPA+I+R L++FG+ L ++L E+K+ L+ISADHGHAHDEK
Sbjct: 121 GEIIPLHFLEKREIVLLTPARIDRNILVEFGRFLGKLLEEEEKKIGLIISADHGHAHDEK 180
Query: 181 GPYGYAKESEEYDKIIVEALKNSNLEMLLELDDEFIAKAKPDSYWSLLIGLGVLKEIPMK 240
GPYGYAKESEEYDKII EALK+SNLE LL LDDEFIAKAKPDSYWSLLIGLGVLKEIPMK
Sbjct: 181 GPYGYAKESEEYDKIITEALKSSNLETLLSLDDEFIAKAKPDSYWSLLIGLGVLKEIPMK 240
Query: 241 SSLVTYACPTYYGMASALFTK 261
SSLVTYACPTYYGMASALF++
Sbjct: 241 SSLVTYACPTYYGMASALFSR 261
>gb|AAK42153.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 257
Score = 223 bits (562), Expect = 2e-57
Identities = 111/264 (42%), Positives = 172/264 (65%), Gaps = 11/264 (4%)
Query: 1 MLIGMAIMPHGNEAVYPPDEESKELNKALREIGSQLKEAETYVLISPHNVRLSDHLGIIM 60
M+ + + PHG+E + P DE+S LNKA+RE S +K A+ Y++I+PHN+R+ DH+ +I+
Sbjct: 1 MISFILVAPHGDEIIDPKDEKSSLLNKAMREAASLVK-ADKYIVITPHNIRIDDHMAVIL 59
Query: 61 AEHLIPWLPFNDVEVPVEGEYETDRELAELIFKETK-ENFPIVDINFATLRGRYSRFPLT 119
++ ++ +Y DR LA I++ K P+V +NF L G+ S+ L
Sbjct: 60 TQYA------EGKRGKIKRKYLCDRGLAYEIYERAKGSGLPVVGVNFGALEGKESKIALD 113
Query: 120 WGEIIPLHFLEKRQIVLLTPAK-IERETLIKFGKALARILNNYERKVALVISADHGHAHD 178
WG IPL+FL++R+IVLLTPA+ ++RE L KFG + +L ++ ++V +++SADH H HD
Sbjct: 114 WGSSIPLYFLKRRRIVLLTPARGVKREILRKFGVVIGEVLRDHRKRVGVIVSADHAHTHD 173
Query: 179 EKGPYGYAKESEEYDKIIVEALKNSNLEMLLELDDEFIAKAKPDSYWSLLIGLGVLKEIP 238
KGPYGY++ + YD IV+ K+ E L+++DD+ I++AKPDSYW LLI LG+L+
Sbjct: 174 PKGPYGYSEYAAVYDSTIVDIFKSERFEDLMKIDDKVISEAKPDSYWQLLIMLGILESSY 233
Query: 239 MKSS--LVTYACPTYYGMASALFT 260
K S L+ Y P+Y+GM AL +
Sbjct: 234 NKYSVKLMEYQVPSYFGMMVALLS 257
>emb|CAC12540.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 257
Score = 118 bits (294), Expect = 5e-26
Identities = 71/259 (27%), Positives = 134/259 (51%), Gaps = 11/259 (4%)
Query: 1 MLIGMAIMPHGNEAVYPPDEESKELNKALREIGSQLKEAETYVLISPHNVRLSDHLGIIM 60
ML + ++PHG+E + E + + A++ S +++T+V+ISPH + L ++ +
Sbjct: 1 MLNRIYVIPHGDEILDRETREDQAMYDAIKRYTSG-DDSDTFVVISPHGIVLDSYIAVTY 59
Query: 61 AEHLIPWLPFNDVEVPVEGEYETDRELAELIFK-ETKENFPIVDINFATLRGRYSRFPLT 119
++ + + + + + YE +L +++ ET + + TL G Y F L
Sbjct: 60 SKIITGY--YRTKKHVIRKRYENAVDLVDMLASHETVQRLRCI-----TLSGNYPCF-LD 111
Query: 120 WGEIIPLHFLEKRQIVLL-TPAKIERETLIKFGKALARILNNYERKVALVISADHGHAHD 178
+G +IPL F ++IV + P + +E + F L + NY +++L+ISAD H H
Sbjct: 112 FGSLIPLAFFRPKRIVAMGEPRLLSKERIESFSDHLVSVCENYTGRISLIISADQAHTHS 171
Query: 179 EKGPYGYAKESEEYDKIIVEALKNSNLEMLLELDDEFIAKAKPDSYWSLLIGLGVLKEIP 238
GPYGY+ S YD+ +V+++ + + L + I +AKPDSY ++++ +L+
Sbjct: 172 PDGPYGYSDMSSYYDETVVKSIDSGDFSALYRMQQAVIDEAKPDSYQNMIMLKRILERTG 231
Query: 239 MKSSLVTYACPTYYGMASA 257
+ + Y Y+GMA A
Sbjct: 232 RRMKVRYYYVAKYFGMAFA 250
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98423281
Number of Sequences: 2977
Number of extensions: 4028650
Number of successful extensions: 11278
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11269
Number of HSP's gapped (non-prelim): 4
length of query: 262
length of database: 189,106,746
effective HSP length: 55
effective length of query: 207
effective length of database: 156,189,961
effective search space: 32331321927
effective search space used: 32331321927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)