BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0870 (PAB0870) DE:ribosomal protein S18 alanine
acetyltransferase related
         (173 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75040 ribosomal protein s18 alanine acetyltransferase rela...   356  9e-98
pir||A71121 hypothetical protein PH0736 - Pyrococcus horikoshii ...   281  4e-75

>pir||H75040 ribosomal protein s18 alanine acetyltransferase related PAB0870 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458734|emb|CAB50221.1| (AJ248287) ribosomal protein
           S18 alanine acetyltransferase related [Pyrococcus
           abyssi]
           Length = 173
           
 Score =  356 bits (904), Expect = 9e-98
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MIERIGNPIEVKDELLNLMFRIYRSTEGKYPALEWADEKPSLDDFPGFKKVYEPFLEFRL 60
           MIERIGNPIEVKDELLNLMFRIYRSTEGKYPALEWADEKPSLDDFPGFKKVYEPFLEFRL
Sbjct: 1   MIERIGNPIEVKDELLNLMFRIYRSTEGKYPALEWADEKPSLDDFPGFKKVYEPFLEFRL 60

Query: 61  TKEFDELYVYKENNRIIGTVALVYKGIKEKGIWWVPEELINERTGLIELFVVDPEFQGKG 120
           TKEFDELYVYKENNRIIGTVALVYKGIKEKGIWWVPEELINERTGLIELFVVDPEFQGKG
Sbjct: 61  TKEFDELYVYKENNRIIGTVALVYKGIKEKGIWWVPEELINERTGLIELFVVDPEFQGKG 120

Query: 121 IGSALLEFAIKRLNSLGKDAYVVTFPNIDAYRYYLKKGFKEVMRYKEFVILKA 173
           IGSALLEFAIKRLNSLGKDAYVVTFPNIDAYRYYLKKGFKEVMRYKEFVILKA
Sbjct: 121 IGSALLEFAIKRLNSLGKDAYVVTFPNIDAYRYYLKKGFKEVMRYKEFVILKA 173


>pir||A71121 hypothetical protein PH0736 - Pyrococcus horikoshii
           >gi|3257144|dbj|BAA29827.1| (AP000003) 182aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 182
           
 Score =  281 bits (711), Expect = 4e-75
 Identities = 131/172 (76%), Positives = 153/172 (88%), Gaps = 1/172 (0%)

Query: 2   IERIGNPIEVKDELLNLMFRIYRSTEGKYPALEWADEKPSLDDFPGFKKVYEPFLEFRLT 61
           +++I NP  VKDELL LMFRIYRST GKYPALEW   KP+ +DF GF++VYEPFL+FRL+
Sbjct: 4   VKKIKNPSTVKDELLELMFRIYRSTNGKYPALEWVKRKPNPNDFDGFREVYEPFLKFRLS 63

Query: 62  KEFDELYVYKENNRIIGTVALVYKGIKEKGIWWVPEELINERTGLIELFVVDPEFQGKGI 121
           +EFDELY Y+++NRIIGT+ALVYK IKEKGIWWVPEEL+NE+ GLIE FVVDPEFQGKGI
Sbjct: 64  QEFDELYTYQKDNRIIGTIALVYKRIKEKGIWWVPEELMNEKVGLIEFFVVDPEFQGKGI 123

Query: 122 GSALLEFAIKRLNSLGKDAYVVTFPNIDAYR-YYLKKGFKEVMRYKEFVILK 172
           GS LLEFA+KRL SLGKD YVVTFPN++AY  YY+KKGF+E+MRYKEFVILK
Sbjct: 124 GSTLLEFAVKRLRSLGKDPYVVTFPNLEAYSYYYMKKGFREIMRYKEFVILK 175


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.144    0.427 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67623876
Number of Sequences: 2977
Number of extensions: 3001790
Number of successful extensions: 5615
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5612
Number of HSP's gapped (non-prelim): 2
length of query: 173
length of database: 189,106,746
effective HSP length: 50
effective length of query: 123
effective length of database: 159,182,396
effective search space: 19579434708
effective search space used: 19579434708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)