BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0872 (PAB0872) DE:Hypothetical protein
(349 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75041 hypothetical protein PAB0872 - Pyrococcus abyssi (st... 708 0.0
pir||A71120 hypothetical protein PH0728 - Pyrococcus horikoshii ... 678 0.0
sp|Q58669|YC73_METJA HYPOTHETICAL PROTEIN MJ1273 >gi|2128053|pir... 479 e-134
pir||A70451 conserved hypothetical protein aq_1754 - Aquifex aeo... 345 5e-94
pir||S15949 hypothetical protein B (scsB 5' region) - Thermus aq... 272 5e-72
sp|P25125|YSC2_THEFL HYPOTHETICAL 38.4 KDA PROTEIN IN SCSB 5'REG... 272 6e-72
gi|11499203 conserved hypothetical protein [Archaeoglobus fulgid... 227 2e-58
sp|Q58088|Y675_METJA HYPOTHETICAL PROTEIN MJ0675 >gi|2826305|gb|... 159 4e-38
pir||C64384 hypothetical protein MJ0675 - Methanococcus jannaschii 157 2e-37
>pir||E75041 hypothetical protein PAB0872 - Pyrococcus abyssi (strain Orsay)
>gi|5458739|emb|CAB50226.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 349
Score = 708 bits (1807), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60
MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY
Sbjct: 1 MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60
Query: 61 VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP 120
VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP
Sbjct: 61 VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP 120
Query: 121 LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID 180
LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID
Sbjct: 121 LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID 180
Query: 181 ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI 240
ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI
Sbjct: 181 ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI 240
Query: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA 300
ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA
Sbjct: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA 300
Query: 301 WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT 349
WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT
Sbjct: 301 WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT 349
>pir||A71120 hypothetical protein PH0728 - Pyrococcus horikoshii
>gi|3257136|dbj|BAA29819.1| (AP000003) 349aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 349
Score = 678 bits (1731), Expect = 0.0
Identities = 324/349 (92%), Positives = 343/349 (97%)
Query: 1 MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60
MKEIVERVK+KTKIPVYERS+ENVLSA+LAS+DIWRIVDLSEEPLPLVVSILE LNELGY
Sbjct: 1 MKEIVERVKTKTKIPVYERSVENVLSAVLASSDIWRIVDLSEEPLPLVVSILETLNELGY 60
Query: 61 VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP 120
V+F+ GVKLTEKGE+L+AE GIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVK+RPEP
Sbjct: 61 VTFDKGVKLTEKGEELVAEYGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKERPEP 120
Query: 121 LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID 180
LH+YDQ YVTPETTVARVILMHTRGDLENKE+FVLGDDDLTS+ALMLSGLPKRIAVLDID
Sbjct: 121 LHEYDQGYVTPETTVARVILMHTRGDLENKEVFVLGDDDLTSIALMLSGLPKRIAVLDID 180
Query: 181 ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI 240
ERLIKFIEK ADE+GYNDIEIFTFDLRKPLP+YALHKFDTFITDPPETIKAIRAFVGRGI
Sbjct: 181 ERLIKFIEKTADEIGYNDIEIFTFDLRKPLPEYALHKFDTFITDPPETIKAIRAFVGRGI 240
Query: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA 300
ATLKGPRCAGYFGITRRESSLDKWREIQR+LINEFNVVITDIIRNFNEYVNWGY +ET+A
Sbjct: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRMLINEFNVVITDIIRNFNEYVNWGYVEETKA 300
Query: 301 WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT 349
WRLIP+KKLPEYNWYKSYMFRIETLEGS+GYEEEITEEDIYNDEEASTT
Sbjct: 301 WRLIPIKKLPEYNWYKSYMFRIETLEGSKGYEEEITEEDIYNDEEASTT 349
>sp|Q58669|YC73_METJA HYPOTHETICAL PROTEIN MJ1273 >gi|2128053|pir||H64458 hypothetical
protein homolog MJ1273 - Methanococcus jannaschii
>gi|1591909|gb|AAB99279.1| (U67568) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 350
Score = 479 bits (1219), Expect = e-134
Identities = 225/350 (64%), Positives = 285/350 (81%), Gaps = 1/350 (0%)
Query: 1 MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60
M+ I+E+V++K++IPVY++SIENVLSAIL +ND W+IVDLSEEPLPLV I+ L E G
Sbjct: 1 MERILEKVRAKSEIPVYDKSIENVLSAILTTNDFWKIVDLSEEPLPLVADIIRILEEEGL 60
Query: 61 VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP 120
V +G++ TEKG + I GIG + + C C+G+ V L+ + DLLE+F+EIVK+RP P
Sbjct: 61 VKISNGIEFTEKGNEFIKSYGIGAKDNSVCECCEGRGVSLKNYQDLLERFKEIVKNRPMP 120
Query: 121 LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID 180
H+YDQ +VTPE T++R+ LM++RGDL NK++ VLGDDDLTS+ALMLS LPK+I V+DID
Sbjct: 121 KHEYDQGFVTPECTISRIALMNSRGDLFNKDVLVLGDDDLTSIALMLSNLPKKIVVVDID 180
Query: 181 ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI 240
+RLI FI++VA++L Y +IE+ T DLRKPLP+ FDTFITDPPET+ A++ F+GRGI
Sbjct: 181 DRLINFIKEVAEQLNYKNIEVITLDLRKPLPEKYSRAFDTFITDPPETVYAVKTFIGRGI 240
Query: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA 300
+ LKG R AGYFGITRRESSLDKWREIQR LIN+FNVVITDIIRNFN YVNWGY +ETRA
Sbjct: 241 SALKGERRAGYFGITRRESSLDKWREIQRTLINDFNVVITDIIRNFNHYVNWGYEEETRA 300
Query: 301 WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEI-TEEDIYNDEEASTT 349
W+L PVKK PE WYKSYMFRIETL+ SRG+EEE+ +++YND E+STT
Sbjct: 301 WKLAPVKKKPEDIWYKSYMFRIETLKDSRGFEEEVDVGDELYNDAESSTT 350
>pir||A70451 conserved hypothetical protein aq_1754 - Aquifex aeolicus
>gi|2984061|gb|AAC07602.1| (AE000754) hypothetical
protein [Aquifex aeolicus]
Length = 355
Score = 345 bits (875), Expect = 5e-94
Identities = 170/352 (48%), Positives = 239/352 (67%), Gaps = 3/352 (0%)
Query: 1 MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60
++ I + V+ +TK+ ++ R++E VL A+L + D W+IVD S+ P+P I++ + G
Sbjct: 4 LERIAKEVQEETKVRLHARNVERVLQALLKTGDFWKIVDYSDLPVPAASGIIKKFLDEGI 63
Query: 61 VSFEDG--VKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRP 118
V ++ + T+KG DL+ ELGI ++ C C+G+ + +L F EI KDRP
Sbjct: 64 VFIDENENILFTQKGLDLVKELGIEPFEEHKCRACEGRGIPFYDDKELYRTFVEIAKDRP 123
Query: 119 EPLHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLG-DDDLTSVALMLSGLPKRIAVL 177
+P+ QYDQ VTPETTV+RV+ + +RGDL KEI V+G +DDLT +A+ L+ KR+ ++
Sbjct: 124 KPVQQYDQGSVTPETTVSRVLFLDSRGDLRGKEIIVMGAEDDLTGLAIALTRKAKRVLII 183
Query: 178 DIDERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVG 237
DIDERLI F ++ ELG ++ E +DLR P + L KFD FITDPPET A RAF+G
Sbjct: 184 DIDERLIDFDNRIIKELGIDNAEAMVWDLRNPYTEDFLGKFDVFITDPPETFAAFRAFIG 243
Query: 238 RGIATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQE 297
RGIATLK CAGYFG+T R+SS+ +W+E Q +LINE+ VVITDII++FN+Y+NW Y E
Sbjct: 244 RGIATLKDAGCAGYFGLTLRDSSIFRWKEFQEILINEYGVVITDIIQDFNDYMNWEYHPE 303
Query: 298 TRAWRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT 349
TRA ++ PVKK P WY+S +RIETL G + + E I++E Y DEE STT
Sbjct: 304 TRAAQIAPVKKNPTDIWYRSAWYRIETLPGFKRWNEPISDEVFYLDEEGSTT 355
>pir||S15949 hypothetical protein B (scsB 5' region) - Thermus aquaticus
>gi|227821|prf||1712304B scsA-associated ORF B [Thermus
aquaticus flavus]
Length = 343
Score = 272 bits (688), Expect = 5e-72
Identities = 150/346 (43%), Positives = 205/346 (58%), Gaps = 12/346 (3%)
Query: 3 EIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGYVS 62
++ E V+ T +PV R +E L A+ A+ D+W V LS PL +V I E L G +
Sbjct: 8 QVAEEVRRATGLPVGWRDVERTLGALRATRDLWEAVRLSRVPLRFLVPIWEGLARRGLLR 67
Query: 63 FEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGK-TVDLQAFADLLEQFREIVKDRPEPL 121
E+G+ DL+AE+ + + CP C+G+ V + E+F K+RPE +
Sbjct: 68 VEEGL-------DLLAEVPAPRPGEAACPACEGRGLVGERLPGRAAERFLAWAKERPEAI 120
Query: 122 HQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDIDE 181
+DQ YVTPE+T+ARV L GDLE KE+ VLGDDDLT +A L+GLPKR+ VLD D
Sbjct: 121 QDFDQGYVTPESTLARVALAWNWGDLEGKEVLVLGDDDLTGLAAALTGLPKRVVVLDADP 180
Query: 182 RLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGIA 241
R ++F+E+ A G +E DLR+PLP+ +H F TF TDP E ++AFVGRG+
Sbjct: 181 RYVRFLERAAKAEGL-PLEAHVHDLREPLPEAWVHAFHTFFTDPVEGPLGLQAFVGRGLL 239
Query: 242 TLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRAW 301
L+G CAGY G+T E+SL KW + QR L+ E VIT++ F+ Y NWGY ++ RAW
Sbjct: 240 ALEGEGCAGYVGLTHVEASLAKWADFQRFLL-ENGAVITELRDGFHVYENWGYIEQMRAW 298
Query: 302 RLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEAS 347
+PVK+ PE WY S + R+E L SR E E DEEA+
Sbjct: 299 PWLPVKRRPEKPWYTSALIRLELL--SRADLENARVEGDLQDEEAT 342
>sp|P25125|YSC2_THEFL HYPOTHETICAL 38.4 KDA PROTEIN IN SCSB 5'REGION (ORFB)
>gi|1655696|emb|CAA38005.1| (X54073) GTG start codon;
ORFB [Thermus aquaticus flavus]
Length = 343
Score = 272 bits (687), Expect = 6e-72
Identities = 149/346 (43%), Positives = 205/346 (59%), Gaps = 12/346 (3%)
Query: 3 EIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGYVS 62
++ E V+ T +PV R +E L A+ A+ D+W V LS PL +V I E L G +
Sbjct: 8 QVAEEVRRATGLPVGWRDVERTLGALRATRDLWEAVRLSRVPLRFLVPIWEGLARRGLLR 67
Query: 63 FEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGK-TVDLQAFADLLEQFREIVKDRPEPL 121
E+G+ DL+AE+ + + CP C+G+ V + E+F K+RPE +
Sbjct: 68 VEEGL-------DLLAEVPAPRPGEAACPACEGRGLVGERLPGRAAERFLAWAKERPEAI 120
Query: 122 HQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDIDE 181
+DQ YVTPE+T+ARV L GDLE KE+ VLGDDDLT +A L+GLPKR+ VLD D
Sbjct: 121 QDFDQGYVTPESTLARVALAWNWGDLEGKEVLVLGDDDLTGLAAALTGLPKRVVVLDADP 180
Query: 182 RLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGIA 241
R+++F+E+ A G +E DLR+PLP+ +H F TF TDP E ++AFVGRG+
Sbjct: 181 RIVRFLERAAKAEGL-PLEAHVHDLREPLPEAWVHAFHTFFTDPVEGPLGLQAFVGRGLL 239
Query: 242 TLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRAW 301
L+G CAGY G+T E+SL KW + QR L+ E VIT++ F+ Y NWGY ++ RAW
Sbjct: 240 ALEGEGCAGYVGLTHVEASLAKWADFQRFLL-ENGAVITELRDGFHVYENWGYIEQMRAW 298
Query: 302 RLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEAS 347
+PVK+ PE WY S + R+E L R E E DEEA+
Sbjct: 299 PWLPVKRRPEKPWYTSALIRLELLR--RADLENARVEGDLQDEEAT 342
>gi|11499203 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448388|pir||B69451 conserved hypothetical protein
AF1611 - Archaeoglobus fulgidus
>gi|2648946|gb|AAB89636.1| (AE000991) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 371
Score = 227 bits (572), Expect = 2e-58
Identities = 130/346 (37%), Positives = 203/346 (58%), Gaps = 23/346 (6%)
Query: 18 ERSIENVLSAILASN-DIWRIVDLSEEPLPLVVSILEALNELGYVSFEDG-VKLTEKGED 75
+R + +L +L ++ ++ + L +L +L + G + E G V++TEKG +
Sbjct: 33 DRIVRQILVKLLGGERSVYELIYYQDASLREFFELLNSLRDEGLIEVESGKVRITEKGRE 92
Query: 76 LIAELGIGKRYDYTCPHCQGKTVDLQA-FADLLEQFREIVKDRPEPLHQYDQAYVTPETT 134
+ + + D C C+G + + F ++L+++ EI KDRPE + YDQ +++ E
Sbjct: 93 VAEKERLKFCGDVECECCEGTGLSINPYFKEILQKYSEIAKDRPETIEVYDQGFISLEGV 152
Query: 135 VARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDIDERLIKFIEKVADEL 194
+ RV ++ RGDL N IFV+GDDDL +A L+G+P+++AV+DIDERLI FI +VA+E
Sbjct: 153 IRRVEFVYDRGDL-NGRIFVVGDDDLFGIAASLTGMPEKVAVVDIDERLINFINRVAEEY 211
Query: 195 GYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGIATLKGPRCAGYFGI 254
N +E F +D+++ PD KFD F+TDP ETI ++ F+ RG++TLKG AGYFGI
Sbjct: 212 SLN-VEAFVYDVQQAFPDELKRKFDVFVTDPVETIPGLKLFLSRGVSTLKGVGGAGYFGI 270
Query: 255 TRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRAWRLIPVKKLP---- 310
T E+S KW EIQR +I++ +ITD+ R FN Y E +R +KLP
Sbjct: 271 TTLEASRRKWYEIQR-MIHDMGFIITDLRRRFNVYPE----DEKNFFRF--QEKLPIVRH 323
Query: 311 -----EYNWYKSYMFRIETLEGSRGY--EEEITEEDIYNDEEASTT 349
++NWY S +FRIE ++ + E I +E +Y D+E+ T
Sbjct: 324 LQAKVDFNWYNSTLFRIEAVKEPKPIVEGEMIIDEKVYKDDESWAT 369
>sp|Q58088|Y675_METJA HYPOTHETICAL PROTEIN MJ0675 >gi|2826305|gb|AAB98669.1| (U67514)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 391
Score = 159 bits (399), Expect = 4e-38
Identities = 101/291 (34%), Positives = 154/291 (52%), Gaps = 10/291 (3%)
Query: 4 IVERVKSKTKIPVYERSIENVLSAILASNDIW--RIVDLSEEPLPLVVSILEALNELGYV 61
++ V K I +R++E+++ I I +I + PLP+V + L +
Sbjct: 23 LLNNVAKKADIAEGKRAVEDIIRVIYRHQPISTKKIAQKTRLPLPIVAKVRTILEREKIL 82
Query: 62 S-FEDGVKLTEKGEDLIAE-LGIGKRYDYTCPHCQGKTVDL-QAFADLLEQFREIVKDRP 118
E G +LT+ G++ L + + TC C G+ + L + F D+L + R K RP
Sbjct: 83 KRTERGAELTDLGKEFAENFLKLKYKKSLTCKTCNGRGIVLDEFFEDILNKVRVWAKRRP 142
Query: 119 EPLHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLD 178
DQ++ TPET+ R LM+ RGDLE K I +GDDDLTS+ L+ + + IAV+D
Sbjct: 143 LVDTTIDQSFATPETSTYRAALMYERGDLEGKRILFVGDDDLTSLPTALTNMAEEIAVVD 202
Query: 179 IDERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGR 238
IDER++K IEK + + G I+ DLR PLP +FD TDPP T+ ++ F+ R
Sbjct: 203 IDERILKLIEKFSQKEGVK-IKTIKHDLRNPLPQDLKERFDVISTDPPYTVDGLKLFLSR 261
Query: 239 GIATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEY 289
GI L G Y + + +D+W IQ+ + N VI+++I NFN Y
Sbjct: 262 GIEAL-GKEGIAYLSYSHK--PIDEWLSIQKAITN-MGFVISELIPNFNYY 308
>pir||C64384 hypothetical protein MJ0675 - Methanococcus jannaschii
Length = 391
Score = 157 bits (392), Expect = 2e-37
Identities = 100/291 (34%), Positives = 153/291 (52%), Gaps = 10/291 (3%)
Query: 4 IVERVKSKTKIPVYERSIENVLSAILASNDIW--RIVDLSEEPLPLVVSILEALNELGYV 61
++ V K I +R++E+++ I I +I + PLP+V + L +
Sbjct: 23 LLNNVAKKADIAEGKRAVEDIIRVIYRHQPISTKKIAQKTRLPLPIVAKVRTILEREKIL 82
Query: 62 S-FEDGVKLTEKGEDLIAE-LGIGKRYDYTCPHCQGKTVDL-QAFADLLEQFREIVKDRP 118
E G +LT+ G++ L + + TC C G+ + L + F D+L + R K RP
Sbjct: 83 KRTERGAELTDLGKEFAENFLKLKYKKSLTCKTCNGRGIVLDEFFEDILNKVRVWAKRRP 142
Query: 119 EPLHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLD 178
DQ++ TPET+ R LM+ RGDLE K I +GDDDLTS+ L+ + + IAV+D
Sbjct: 143 LVDTTIDQSFATPETSTYRAALMYERGDLEGKRILFVGDDDLTSLPTALTNMAEEIAVVD 202
Query: 179 IDERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGR 238
IDER++K IEK + + G I+ DLR PLP +FD TDPP T+ ++ F+ R
Sbjct: 203 IDERILKLIEKFSQKEGVK-IKTIKHDLRNPLPQDLKERFDVISTDPPYTVDGLKLFLSR 261
Query: 239 GIATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEY 289
GI L G Y + + +D+W IQ+ + N VI+++I N N Y
Sbjct: 262 GIEAL-GKEGIAYLSYSHK--PIDEWLSIQKAITN-MGFVISELIPNXNYY 308
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131344789
Number of Sequences: 2977
Number of extensions: 5694748
Number of successful extensions: 14061
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14034
Number of HSP's gapped (non-prelim): 9
length of query: 349
length of database: 189,106,746
effective HSP length: 55
effective length of query: 294
effective length of database: 156,189,961
effective search space: 45919848534
effective search space used: 45919848534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)