BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0872 (PAB0872) DE:Hypothetical protein
         (349 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75041 hypothetical protein PAB0872 - Pyrococcus abyssi (st...   708  0.0
pir||A71120 hypothetical protein PH0728 - Pyrococcus horikoshii ...   678  0.0
sp|Q58669|YC73_METJA HYPOTHETICAL PROTEIN MJ1273 >gi|2128053|pir...   479  e-134
pir||A70451 conserved hypothetical protein aq_1754 - Aquifex aeo...   345  5e-94
pir||S15949 hypothetical protein B (scsB 5' region) - Thermus aq...   272  5e-72
sp|P25125|YSC2_THEFL HYPOTHETICAL 38.4 KDA PROTEIN IN SCSB 5'REG...   272  6e-72
gi|11499203 conserved hypothetical protein [Archaeoglobus fulgid...   227  2e-58
sp|Q58088|Y675_METJA HYPOTHETICAL PROTEIN MJ0675 >gi|2826305|gb|...   159  4e-38
pir||C64384 hypothetical protein MJ0675 - Methanococcus jannaschii    157  2e-37

>pir||E75041 hypothetical protein PAB0872 - Pyrococcus abyssi (strain Orsay)
           >gi|5458739|emb|CAB50226.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 349
           
 Score =  708 bits (1807), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60
           MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY
Sbjct: 1   MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60

Query: 61  VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP 120
           VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP
Sbjct: 61  VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP 120

Query: 121 LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID 180
           LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID
Sbjct: 121 LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID 180

Query: 181 ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI 240
           ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI
Sbjct: 181 ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI 240

Query: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA 300
           ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA
Sbjct: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA 300

Query: 301 WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT 349
           WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT
Sbjct: 301 WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT 349


>pir||A71120 hypothetical protein PH0728 - Pyrococcus horikoshii
           >gi|3257136|dbj|BAA29819.1| (AP000003) 349aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 349
           
 Score =  678 bits (1731), Expect = 0.0
 Identities = 324/349 (92%), Positives = 343/349 (97%)

Query: 1   MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60
           MKEIVERVK+KTKIPVYERS+ENVLSA+LAS+DIWRIVDLSEEPLPLVVSILE LNELGY
Sbjct: 1   MKEIVERVKTKTKIPVYERSVENVLSAVLASSDIWRIVDLSEEPLPLVVSILETLNELGY 60

Query: 61  VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP 120
           V+F+ GVKLTEKGE+L+AE GIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVK+RPEP
Sbjct: 61  VTFDKGVKLTEKGEELVAEYGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKERPEP 120

Query: 121 LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID 180
           LH+YDQ YVTPETTVARVILMHTRGDLENKE+FVLGDDDLTS+ALMLSGLPKRIAVLDID
Sbjct: 121 LHEYDQGYVTPETTVARVILMHTRGDLENKEVFVLGDDDLTSIALMLSGLPKRIAVLDID 180

Query: 181 ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI 240
           ERLIKFIEK ADE+GYNDIEIFTFDLRKPLP+YALHKFDTFITDPPETIKAIRAFVGRGI
Sbjct: 181 ERLIKFIEKTADEIGYNDIEIFTFDLRKPLPEYALHKFDTFITDPPETIKAIRAFVGRGI 240

Query: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA 300
           ATLKGPRCAGYFGITRRESSLDKWREIQR+LINEFNVVITDIIRNFNEYVNWGY +ET+A
Sbjct: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRMLINEFNVVITDIIRNFNEYVNWGYVEETKA 300

Query: 301 WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT 349
           WRLIP+KKLPEYNWYKSYMFRIETLEGS+GYEEEITEEDIYNDEEASTT
Sbjct: 301 WRLIPIKKLPEYNWYKSYMFRIETLEGSKGYEEEITEEDIYNDEEASTT 349


>sp|Q58669|YC73_METJA HYPOTHETICAL PROTEIN MJ1273 >gi|2128053|pir||H64458 hypothetical
           protein homolog MJ1273 - Methanococcus jannaschii
           >gi|1591909|gb|AAB99279.1| (U67568) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 350
           
 Score =  479 bits (1219), Expect = e-134
 Identities = 225/350 (64%), Positives = 285/350 (81%), Gaps = 1/350 (0%)

Query: 1   MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60
           M+ I+E+V++K++IPVY++SIENVLSAIL +ND W+IVDLSEEPLPLV  I+  L E G 
Sbjct: 1   MERILEKVRAKSEIPVYDKSIENVLSAILTTNDFWKIVDLSEEPLPLVADIIRILEEEGL 60

Query: 61  VSFEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP 120
           V   +G++ TEKG + I   GIG + +  C  C+G+ V L+ + DLLE+F+EIVK+RP P
Sbjct: 61  VKISNGIEFTEKGNEFIKSYGIGAKDNSVCECCEGRGVSLKNYQDLLERFKEIVKNRPMP 120

Query: 121 LHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDID 180
            H+YDQ +VTPE T++R+ LM++RGDL NK++ VLGDDDLTS+ALMLS LPK+I V+DID
Sbjct: 121 KHEYDQGFVTPECTISRIALMNSRGDLFNKDVLVLGDDDLTSIALMLSNLPKKIVVVDID 180

Query: 181 ERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGI 240
           +RLI FI++VA++L Y +IE+ T DLRKPLP+     FDTFITDPPET+ A++ F+GRGI
Sbjct: 181 DRLINFIKEVAEQLNYKNIEVITLDLRKPLPEKYSRAFDTFITDPPETVYAVKTFIGRGI 240

Query: 241 ATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRA 300
           + LKG R AGYFGITRRESSLDKWREIQR LIN+FNVVITDIIRNFN YVNWGY +ETRA
Sbjct: 241 SALKGERRAGYFGITRRESSLDKWREIQRTLINDFNVVITDIIRNFNHYVNWGYEEETRA 300

Query: 301 WRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEI-TEEDIYNDEEASTT 349
           W+L PVKK PE  WYKSYMFRIETL+ SRG+EEE+   +++YND E+STT
Sbjct: 301 WKLAPVKKKPEDIWYKSYMFRIETLKDSRGFEEEVDVGDELYNDAESSTT 350


>pir||A70451 conserved hypothetical protein aq_1754 - Aquifex aeolicus
           >gi|2984061|gb|AAC07602.1| (AE000754) hypothetical
           protein [Aquifex aeolicus]
           Length = 355
           
 Score =  345 bits (875), Expect = 5e-94
 Identities = 170/352 (48%), Positives = 239/352 (67%), Gaps = 3/352 (0%)

Query: 1   MKEIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGY 60
           ++ I + V+ +TK+ ++ R++E VL A+L + D W+IVD S+ P+P    I++   + G 
Sbjct: 4   LERIAKEVQEETKVRLHARNVERVLQALLKTGDFWKIVDYSDLPVPAASGIIKKFLDEGI 63

Query: 61  VSFEDG--VKLTEKGEDLIAELGIGKRYDYTCPHCQGKTVDLQAFADLLEQFREIVKDRP 118
           V  ++   +  T+KG DL+ ELGI    ++ C  C+G+ +      +L   F EI KDRP
Sbjct: 64  VFIDENENILFTQKGLDLVKELGIEPFEEHKCRACEGRGIPFYDDKELYRTFVEIAKDRP 123

Query: 119 EPLHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLG-DDDLTSVALMLSGLPKRIAVL 177
           +P+ QYDQ  VTPETTV+RV+ + +RGDL  KEI V+G +DDLT +A+ L+   KR+ ++
Sbjct: 124 KPVQQYDQGSVTPETTVSRVLFLDSRGDLRGKEIIVMGAEDDLTGLAIALTRKAKRVLII 183

Query: 178 DIDERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVG 237
           DIDERLI F  ++  ELG ++ E   +DLR P  +  L KFD FITDPPET  A RAF+G
Sbjct: 184 DIDERLIDFDNRIIKELGIDNAEAMVWDLRNPYTEDFLGKFDVFITDPPETFAAFRAFIG 243

Query: 238 RGIATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQE 297
           RGIATLK   CAGYFG+T R+SS+ +W+E Q +LINE+ VVITDII++FN+Y+NW Y  E
Sbjct: 244 RGIATLKDAGCAGYFGLTLRDSSIFRWKEFQEILINEYGVVITDIIQDFNDYMNWEYHPE 303

Query: 298 TRAWRLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEASTT 349
           TRA ++ PVKK P   WY+S  +RIETL G + + E I++E  Y DEE STT
Sbjct: 304 TRAAQIAPVKKNPTDIWYRSAWYRIETLPGFKRWNEPISDEVFYLDEEGSTT 355


>pir||S15949 hypothetical protein B (scsB 5' region) - Thermus aquaticus
           >gi|227821|prf||1712304B scsA-associated ORF B [Thermus
           aquaticus flavus]
           Length = 343
           
 Score =  272 bits (688), Expect = 5e-72
 Identities = 150/346 (43%), Positives = 205/346 (58%), Gaps = 12/346 (3%)

Query: 3   EIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGYVS 62
           ++ E V+  T +PV  R +E  L A+ A+ D+W  V LS  PL  +V I E L   G + 
Sbjct: 8   QVAEEVRRATGLPVGWRDVERTLGALRATRDLWEAVRLSRVPLRFLVPIWEGLARRGLLR 67

Query: 63  FEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGK-TVDLQAFADLLEQFREIVKDRPEPL 121
            E+G+       DL+AE+   +  +  CP C+G+  V  +      E+F    K+RPE +
Sbjct: 68  VEEGL-------DLLAEVPAPRPGEAACPACEGRGLVGERLPGRAAERFLAWAKERPEAI 120

Query: 122 HQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDIDE 181
             +DQ YVTPE+T+ARV L    GDLE KE+ VLGDDDLT +A  L+GLPKR+ VLD D 
Sbjct: 121 QDFDQGYVTPESTLARVALAWNWGDLEGKEVLVLGDDDLTGLAAALTGLPKRVVVLDADP 180

Query: 182 RLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGIA 241
           R ++F+E+ A   G   +E    DLR+PLP+  +H F TF TDP E    ++AFVGRG+ 
Sbjct: 181 RYVRFLERAAKAEGL-PLEAHVHDLREPLPEAWVHAFHTFFTDPVEGPLGLQAFVGRGLL 239

Query: 242 TLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRAW 301
            L+G  CAGY G+T  E+SL KW + QR L+ E   VIT++   F+ Y NWGY ++ RAW
Sbjct: 240 ALEGEGCAGYVGLTHVEASLAKWADFQRFLL-ENGAVITELRDGFHVYENWGYIEQMRAW 298

Query: 302 RLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEAS 347
             +PVK+ PE  WY S + R+E L  SR   E    E    DEEA+
Sbjct: 299 PWLPVKRRPEKPWYTSALIRLELL--SRADLENARVEGDLQDEEAT 342


>sp|P25125|YSC2_THEFL HYPOTHETICAL 38.4 KDA PROTEIN IN SCSB 5'REGION (ORFB)
           >gi|1655696|emb|CAA38005.1| (X54073) GTG start codon;
           ORFB [Thermus aquaticus flavus]
           Length = 343
           
 Score =  272 bits (687), Expect = 6e-72
 Identities = 149/346 (43%), Positives = 205/346 (59%), Gaps = 12/346 (3%)

Query: 3   EIVERVKSKTKIPVYERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGYVS 62
           ++ E V+  T +PV  R +E  L A+ A+ D+W  V LS  PL  +V I E L   G + 
Sbjct: 8   QVAEEVRRATGLPVGWRDVERTLGALRATRDLWEAVRLSRVPLRFLVPIWEGLARRGLLR 67

Query: 63  FEDGVKLTEKGEDLIAELGIGKRYDYTCPHCQGK-TVDLQAFADLLEQFREIVKDRPEPL 121
            E+G+       DL+AE+   +  +  CP C+G+  V  +      E+F    K+RPE +
Sbjct: 68  VEEGL-------DLLAEVPAPRPGEAACPACEGRGLVGERLPGRAAERFLAWAKERPEAI 120

Query: 122 HQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDIDE 181
             +DQ YVTPE+T+ARV L    GDLE KE+ VLGDDDLT +A  L+GLPKR+ VLD D 
Sbjct: 121 QDFDQGYVTPESTLARVALAWNWGDLEGKEVLVLGDDDLTGLAAALTGLPKRVVVLDADP 180

Query: 182 RLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGIA 241
           R+++F+E+ A   G   +E    DLR+PLP+  +H F TF TDP E    ++AFVGRG+ 
Sbjct: 181 RIVRFLERAAKAEGL-PLEAHVHDLREPLPEAWVHAFHTFFTDPVEGPLGLQAFVGRGLL 239

Query: 242 TLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRAW 301
            L+G  CAGY G+T  E+SL KW + QR L+ E   VIT++   F+ Y NWGY ++ RAW
Sbjct: 240 ALEGEGCAGYVGLTHVEASLAKWADFQRFLL-ENGAVITELRDGFHVYENWGYIEQMRAW 298

Query: 302 RLIPVKKLPEYNWYKSYMFRIETLEGSRGYEEEITEEDIYNDEEAS 347
             +PVK+ PE  WY S + R+E L   R   E    E    DEEA+
Sbjct: 299 PWLPVKRRPEKPWYTSALIRLELLR--RADLENARVEGDLQDEEAT 342


>gi|11499203 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7448388|pir||B69451 conserved hypothetical protein
           AF1611 - Archaeoglobus fulgidus
           >gi|2648946|gb|AAB89636.1| (AE000991) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 371
           
 Score =  227 bits (572), Expect = 2e-58
 Identities = 130/346 (37%), Positives = 203/346 (58%), Gaps = 23/346 (6%)

Query: 18  ERSIENVLSAILASN-DIWRIVDLSEEPLPLVVSILEALNELGYVSFEDG-VKLTEKGED 75
           +R +  +L  +L     ++ ++   +  L     +L +L + G +  E G V++TEKG +
Sbjct: 33  DRIVRQILVKLLGGERSVYELIYYQDASLREFFELLNSLRDEGLIEVESGKVRITEKGRE 92

Query: 76  LIAELGIGKRYDYTCPHCQGKTVDLQA-FADLLEQFREIVKDRPEPLHQYDQAYVTPETT 134
           +  +  +    D  C  C+G  + +   F ++L+++ EI KDRPE +  YDQ +++ E  
Sbjct: 93  VAEKERLKFCGDVECECCEGTGLSINPYFKEILQKYSEIAKDRPETIEVYDQGFISLEGV 152

Query: 135 VARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLDIDERLIKFIEKVADEL 194
           + RV  ++ RGDL N  IFV+GDDDL  +A  L+G+P+++AV+DIDERLI FI +VA+E 
Sbjct: 153 IRRVEFVYDRGDL-NGRIFVVGDDDLFGIAASLTGMPEKVAVVDIDERLINFINRVAEEY 211

Query: 195 GYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGRGIATLKGPRCAGYFGI 254
             N +E F +D+++  PD    KFD F+TDP ETI  ++ F+ RG++TLKG   AGYFGI
Sbjct: 212 SLN-VEAFVYDVQQAFPDELKRKFDVFVTDPVETIPGLKLFLSRGVSTLKGVGGAGYFGI 270

Query: 255 TRRESSLDKWREIQRLLINEFNVVITDIIRNFNEYVNWGYAQETRAWRLIPVKKLP---- 310
           T  E+S  KW EIQR +I++   +ITD+ R FN Y       E   +R    +KLP    
Sbjct: 271 TTLEASRRKWYEIQR-MIHDMGFIITDLRRRFNVYPE----DEKNFFRF--QEKLPIVRH 323

Query: 311 -----EYNWYKSYMFRIETLEGSRGY--EEEITEEDIYNDEEASTT 349
                ++NWY S +FRIE ++  +     E I +E +Y D+E+  T
Sbjct: 324 LQAKVDFNWYNSTLFRIEAVKEPKPIVEGEMIIDEKVYKDDESWAT 369


>sp|Q58088|Y675_METJA HYPOTHETICAL PROTEIN MJ0675 >gi|2826305|gb|AAB98669.1| (U67514)
           conserved hypothetical protein [Methanococcus
           jannaschii]
           Length = 391
           
 Score =  159 bits (399), Expect = 4e-38
 Identities = 101/291 (34%), Positives = 154/291 (52%), Gaps = 10/291 (3%)

Query: 4   IVERVKSKTKIPVYERSIENVLSAILASNDIW--RIVDLSEEPLPLVVSILEALNELGYV 61
           ++  V  K  I   +R++E+++  I     I   +I   +  PLP+V  +   L     +
Sbjct: 23  LLNNVAKKADIAEGKRAVEDIIRVIYRHQPISTKKIAQKTRLPLPIVAKVRTILEREKIL 82

Query: 62  S-FEDGVKLTEKGEDLIAE-LGIGKRYDYTCPHCQGKTVDL-QAFADLLEQFREIVKDRP 118
              E G +LT+ G++     L +  +   TC  C G+ + L + F D+L + R   K RP
Sbjct: 83  KRTERGAELTDLGKEFAENFLKLKYKKSLTCKTCNGRGIVLDEFFEDILNKVRVWAKRRP 142

Query: 119 EPLHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLD 178
                 DQ++ TPET+  R  LM+ RGDLE K I  +GDDDLTS+   L+ + + IAV+D
Sbjct: 143 LVDTTIDQSFATPETSTYRAALMYERGDLEGKRILFVGDDDLTSLPTALTNMAEEIAVVD 202

Query: 179 IDERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGR 238
           IDER++K IEK + + G   I+    DLR PLP     +FD   TDPP T+  ++ F+ R
Sbjct: 203 IDERILKLIEKFSQKEGVK-IKTIKHDLRNPLPQDLKERFDVISTDPPYTVDGLKLFLSR 261

Query: 239 GIATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEY 289
           GI  L G     Y   + +   +D+W  IQ+ + N    VI+++I NFN Y
Sbjct: 262 GIEAL-GKEGIAYLSYSHK--PIDEWLSIQKAITN-MGFVISELIPNFNYY 308


>pir||C64384 hypothetical protein MJ0675 - Methanococcus jannaschii
           Length = 391
           
 Score =  157 bits (392), Expect = 2e-37
 Identities = 100/291 (34%), Positives = 153/291 (52%), Gaps = 10/291 (3%)

Query: 4   IVERVKSKTKIPVYERSIENVLSAILASNDIW--RIVDLSEEPLPLVVSILEALNELGYV 61
           ++  V  K  I   +R++E+++  I     I   +I   +  PLP+V  +   L     +
Sbjct: 23  LLNNVAKKADIAEGKRAVEDIIRVIYRHQPISTKKIAQKTRLPLPIVAKVRTILEREKIL 82

Query: 62  S-FEDGVKLTEKGEDLIAE-LGIGKRYDYTCPHCQGKTVDL-QAFADLLEQFREIVKDRP 118
              E G +LT+ G++     L +  +   TC  C G+ + L + F D+L + R   K RP
Sbjct: 83  KRTERGAELTDLGKEFAENFLKLKYKKSLTCKTCNGRGIVLDEFFEDILNKVRVWAKRRP 142

Query: 119 EPLHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDLTSVALMLSGLPKRIAVLD 178
                 DQ++ TPET+  R  LM+ RGDLE K I  +GDDDLTS+   L+ + + IAV+D
Sbjct: 143 LVDTTIDQSFATPETSTYRAALMYERGDLEGKRILFVGDDDLTSLPTALTNMAEEIAVVD 202

Query: 179 IDERLIKFIEKVADELGYNDIEIFTFDLRKPLPDYALHKFDTFITDPPETIKAIRAFVGR 238
           IDER++K IEK + + G   I+    DLR PLP     +FD   TDPP T+  ++ F+ R
Sbjct: 203 IDERILKLIEKFSQKEGVK-IKTIKHDLRNPLPQDLKERFDVISTDPPYTVDGLKLFLSR 261

Query: 239 GIATLKGPRCAGYFGITRRESSLDKWREIQRLLINEFNVVITDIIRNFNEY 289
           GI  L G     Y   + +   +D+W  IQ+ + N    VI+++I N N Y
Sbjct: 262 GIEAL-GKEGIAYLSYSHK--PIDEWLSIQKAITN-MGFVISELIPNXNYY 308


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.140    0.407 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131344789
Number of Sequences: 2977
Number of extensions: 5694748
Number of successful extensions: 14061
Number of sequences better than 1.0e-10: 9
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14034
Number of HSP's gapped (non-prelim): 9
length of query: 349
length of database: 189,106,746
effective HSP length: 55
effective length of query: 294
effective length of database: 156,189,961
effective search space: 45919848534
effective search space used: 45919848534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)