BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0874 (PAB0874) DE:TRANSPORTER (MAJOR FACILITATOR FAMILY)
related
(392 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75042 transporter (major facilitator family) related PAB08... 763 0.0
pir||G71118 hypothetical protein PH0718 - Pyrococcus horikoshii ... 667 0.0
pir||D64464 hypothetical protein MJ1317 - Methanococcus jannasch... 269 5e-71
gb|AAD38864.1| (L09121) hypothetical protein [Thermus thermophilus] 221 9e-57
pir||T45544 hypothetical protein 3 [imported] - Klebsiella pneum... 189 4e-47
pir||A72413 conserved hypothetical protein - Thermotoga maritima... 150 3e-35
pir||G69201 conserved hypothetical protein MTH761 - Methanobacte... 130 3e-29
gi|11499136 conserved hypothetical protein [Archaeoglobus fulgid... 129 4e-29
pir||A72497 hypothetical protein APE2615 - Aeropyrum pernix (str... 109 7e-23
sp|Q50697|YM65_MYCTU HYPOTHETICAL 41.9 KDA PROTEIN RV2265 >gi|74... 107 3e-22
pir||E75048 multidrug resistance protein PAB0913 - Pyrococcus ab... 90 5e-17
gb|AAG18975.1| (AE004998) multidrug resistance protein homolog; ... 90 5e-17
pir||H71070 hypothetical protein PH1260 - Pyrococcus horikoshii ... 86 6e-16
pir||G64494 quinolone resistance protein norA homolog - Methanoc... 86 8e-16
pir||D75094 transport protein, permease PAB0761 - Pyrococcus aby... 86 8e-16
gb|AAK41391.1| Conserved hypothetical protein [Sulfolobus solfat... 83 5e-15
gi|11498923 multidrug resistance protein [Archaeoglobus fulgidus... 81 2e-14
gb|AAK41264.1| Transport conserved hypothetical protein [Sulfolo... 79 1e-13
gb|AAB31949.1| (S74031) NorA {ISP794, quinolone resistance} [Sta... 77 3e-13
sp|P21191|NORA_STAAU QUINOLONE RESISTANCE NORA PROTEIN >gi|97835... 77 4e-13
pir||D71112 hypothetical protein PH0667 - Pyrococcus horikoshii ... 75 1e-12
emb|CAC11594.1| (AL445064) sugar transport protein related prote... 73 4e-12
sp|P54559|YQJV_BACSU HYPOTHETICAL 44.7 KD PROTEIN IN GLNQ-ANSR I... 71 2e-11
pir||D71144 hypothetical protein PH0367 - Pyrococcus horikoshii ... 70 4e-11
dbj|BAA36484.1| (AB019536) NorA [Staphylococcus aureus] 69 6e-11
>pir||E75042 transporter (major facilitator family) related PAB0874 - Pyrococcus
abyssi (strain Orsay) >gi|5458747|emb|CAB50234.1|
(AJ248287) TRANSPORTER (MAJOR FACILITATOR FAMILY)
related [Pyrococcus abyssi]
Length = 392
Score = 763 bits (1948), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MKERKVFGISWNVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLS 60
MKERKVFGISWNVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLS
Sbjct: 1 MKERKVFGISWNVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLS 60
Query: 61 SLFKVLFGYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTA 120
SLFKVLFGYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTA
Sbjct: 61 SLFKVLFGYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTA 120
Query: 121 PRDALIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLIS 180
PRDALIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLIS
Sbjct: 121 PRDALIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLIS 180
Query: 181 AVPGVIGVLIVLLLVKDKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWK 240
AVPGVIGVLIVLLLVKDKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWK
Sbjct: 181 AVPGVIGVLIVLLLVKDKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWK 240
Query: 241 AEELGYSVFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYAN 300
AEELGYSVFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYAN
Sbjct: 241 AEELGYSVFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYAN 300
Query: 301 NLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGY 360
NLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGY
Sbjct: 301 NLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGY 360
Query: 361 LWQTYSLTVGFLYSAVMNVIAMIMMALLIKES 392
LWQTYSLTVGFLYSAVMNVIAMIMMALLIKES
Sbjct: 361 LWQTYSLTVGFLYSAVMNVIAMIMMALLIKES 392
>pir||G71118 hypothetical protein PH0718 - Pyrococcus horikoshii
>gi|3257126|dbj|BAA29809.1| (AP000003) 398aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 398
Score = 667 bits (1702), Expect = 0.0
Identities = 330/390 (84%), Positives = 362/390 (92%)
Query: 2 KERKVFGISWNVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSS 61
KERK+ GISWNVFLLGLVSFLNDMSSEMIAPIVP+YLTDILK+GKLASGSIMGLIESLSS
Sbjct: 6 KERKIAGISWNVFLLGLVSFLNDMSSEMIAPIVPTYLTDILKMGKLASGSIMGLIESLSS 65
Query: 62 LFKVLFGYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAP 121
LFKV+FGYISD FRKRK FVALGYL+STI+KGALA+THSWWDFL LRILDRIGKGIRTAP
Sbjct: 66 LFKVIFGYISDVFRKRKTFVALGYLLSTIAKGALALTHSWWDFLTLRILDRIGKGIRTAP 125
Query: 122 RDALIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISA 181
RDALIAESSEKGKSGKSFGFHRMMDTLGAV GPLVA+GLLALL+ YPKELAYRYIFLISA
Sbjct: 126 RDALIAESSEKGKSGKSFGFHRMMDTLGAVTGPLVAVGLLALLSKYPKELAYRYIFLISA 185
Query: 182 VPGVIGVLIVLLLVKDKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWKA 241
+PG IGVLIV+ LVKD+G VKKKIK IS+LKS +LR FL +VAIAALGRYSYAFTLWK
Sbjct: 186 IPGAIGVLIVIFLVKDRGGIVKKKIKEISSLKSPHLRAFLAVVAIAALGRYSYAFTLWKV 245
Query: 242 EELGYSVFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYANN 301
+ELGYS+FQGL FYALFNVIYAL+AYPIG YSDKVGKK IIT GFGIAGLASL+FAY+ +
Sbjct: 246 KELGYSIFQGLEFYALFNVIYALAAYPIGSYSDKVGKKKIITTGFGIAGLASLLFAYSKS 305
Query: 302 LPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGYL 361
L L+LAF+LYG+YMAIEDTIPRAYMADLAKE+EKGT+IG YHTVFG+FVFPASIIVGYL
Sbjct: 306 LAMLMLAFILYGVYMAIEDTIPRAYMADLAKEYEKGTIIGMYHTVFGIFVFPASIIVGYL 365
Query: 362 WQTYSLTVGFLYSAVMNVIAMIMMALLIKE 391
WQTYSL +GFLY++VMN IAMI+M +KE
Sbjct: 366 WQTYSLEIGFLYASVMNFIAMILMGTFVKE 395
>pir||D64464 hypothetical protein MJ1317 - Methanococcus jannaschii
>gi|1591956|gb|AAB99324.1| (U67571) hypothetical protein
[Methanococcus jannaschii]
Length = 398
Score = 269 bits (680), Expect = 5e-71
Identities = 158/388 (40%), Positives = 236/388 (60%), Gaps = 17/388 (4%)
Query: 9 ISWNVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFG 68
+S NV+LLG SFLNDMSSEMI PI+P +T + G L+ G + GL E +S++ VL G
Sbjct: 20 LSKNVYLLGFTSFLNDMSSEMIMPILPMLITSVGG-GSLSIGLVGGLREFISNILMVLIG 78
Query: 69 YISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAE 128
Y SDK RKRK FV LGYL S++ K L ++ SW +I L+R+GKGIRTAPRDA+I+E
Sbjct: 79 YCSDKVRKRKIFVVLGYLTSSMFKLLLGLSKSWLGAVIFSSLERMGKGIRTAPRDAIISE 138
Query: 129 SSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGV 188
S K GK FG R DT GA+ G +++ + L + ++ I LI+AV G +
Sbjct: 139 SMPK-TLGKGFGIQRAFDTAGAILGSTLSLLFILYL-----QYSFNQIILIAAVIGFL-T 191
Query: 189 LIVLLLVKDKGSEVKKKIKGISALKS--SNLRIFLVIVAIAALGRYSYAFTLWKAEEL-- 244
LI L VK+K S KI +K+ L++F++I AI L +SY F + +A+E
Sbjct: 192 LIPLYFVKEKPSPSNNKITFRVGIKNLPKELKLFILISAIFTLSNFSYMFYILRAQEFLM 251
Query: 245 ----GYSVFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYAN 300
++ + Y L+N+ YA + P G SDK+G+K ++TIG+ + G+ SL FAY
Sbjct: 252 IVDEKMAIIIPIALYILYNIFYATFSIPFGILSDKIGRKSVLTIGYIVYGIVSLGFAYFI 311
Query: 301 NLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGY 360
+ +L+L F LYG+ A+ +AY++DL+ E + T +G ++TV G+ PAS+I GY
Sbjct: 312 SQKSLILLFALYGIAYALFAGNQKAYVSDLSSEDIRATALGLFYTVVGLTSLPASLIAGY 371
Query: 361 LWQTYSLTVGFLYSAVMNVIAMIMMALL 388
LW+ S + FLY +V+ +I+ +++ +
Sbjct: 372 LWK-ISPEMTFLYGSVLAIISGLLLLFI 398
>gb|AAD38864.1| (L09121) hypothetical protein [Thermus thermophilus]
Length = 385
Score = 221 bits (558), Expect = 9e-57
Identities = 139/380 (36%), Positives = 205/380 (53%), Gaps = 28/380 (7%)
Query: 24 DMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISDKFRKRKAFVAL 83
D++SEM P++P +L L G G + G+ E+ +SLFKV+ G +SD+ +R+ F+ L
Sbjct: 2 DVASEMAYPLLPLFLAS-LGAGPGTIGLVEGVAEATASLFKVVGGRLSDRLGRRRPFLLL 60
Query: 84 GYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSEKGKSGKSFGFHR 143
GY + + + LA+ S + L+ R LDR GKG+RTAPRDALIAES+ K G+++G HR
Sbjct: 61 GYGLPALFRPLLALAQSPFHVLLYRFLDRTGKGLRTAPRDALIAESAPKEALGRAYGLHR 120
Query: 144 MMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVLLLVKDKGSEVK 203
+DTLGA GP +A LL L L +R +F +SA+P ++ L++ + +
Sbjct: 121 SLDTLGATLGPFLAFLLLPL-------LGFRGVFWLSALPALLAFLLLFAVRETPRPPSP 173
Query: 204 KKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWKAEELGYSVFQGLGFYALFNVIYA 263
+ L S R FL++ + AL S AF L + +ELG S + Y L+N++YA
Sbjct: 174 LPPLALGHL-SPGYRRFLLVSGLFALALSSNAFLLLRLKELGLSQEEVALAYTLYNLLYA 232
Query: 264 LSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYANNLPTLLLAFVLYGLYMAIEDTIP 323
L AYP+G +D+VG ++ GFG+ L L FA+A L LY LY A +
Sbjct: 233 LLAYPLGGLADRVGLGRMVATGFGLYALVYLGFAWARTAFWALGFLFLYALYSAAFEGAN 292
Query: 324 RAYMADLAKEF-------------------EKGTVIGAYHTVFGVFVFPASIIVGYLWQT 364
RAY+A L E K IG YHTV GV + PAS++ G LWQ
Sbjct: 293 RAYLATLVPEEAKAGAIGLYHTVVGVLLLPAKAGAIGLYHTVVGVLLLPASLLFGLLWQA 352
Query: 365 YSLTVGFLYSAVMNVIAMIM 384
+ FL A + + A+++
Sbjct: 353 FGAAAAFLTGAALALGALLL 372
>pir||T45544 hypothetical protein 3 [imported] - Klebsiella pneumoniae
transposon Tn5711 >gi|3758825|emb|CAA09859.1| (AJ011907)
hypothetical protein [Klebsiella pneumoniae]
Length = 404
Score = 189 bits (476), Expect = 4e-47
Identities = 120/381 (31%), Positives = 204/381 (53%), Gaps = 10/381 (2%)
Query: 13 VFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISD 72
V+++G VS L D+SSEMI ++P ++ L L G I GL E+ + + KV G ISD
Sbjct: 15 VWVVGCVSLLMDISSEMIHSLLPLFMATTLGASVLVIGLIEGLAEATALIVKVFSGVISD 74
Query: 73 KFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSEK 132
KRK LGY + +SK A+ S L R+ DR+GKGIR PRDAL+A+ +
Sbjct: 75 WLGKRKGLALLGYGLGALSKPLFAIASSSGMVLTARLTDRLGKGIRGRPRDALVADVTPP 134
Query: 133 GKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVL 192
G +FG + +DT+GA GPL+A+GL+ L + +R IF ++ +PG++ V ++
Sbjct: 135 ELRGAAFGLRQSLDTIGAFLGPLLAVGLMLLWQD-----DFRAIFWVAVIPGLMAVALLF 189
Query: 193 L-LVKDKGSEVKKKIKGISA--LKSSNLRIFLVIV--AIAALGRYSYAFTLWKAEELGYS 247
L L + + + V K+ +S LK + VI I L R+S AF + +A+E+
Sbjct: 190 LGLHEPRTAVVHKRTNPVSRANLKRLGQSTWWVIALGGIFTLARFSEAFLVLRAQEVHIP 249
Query: 248 VFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYANNLPTLLL 307
+ N++Y+ SAYP G +D++ + ++ +G + +A ++ A + + +L+
Sbjct: 250 LALIPLVMVAMNLLYSFSAYPFGKLADRMSHRHLLQLGLVVLVVADIVLALSTHWVGVLI 309
Query: 308 AFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGYLWQTYSL 367
L+G++M + + A +AD + +GT G + V GV + AS G LW T+
Sbjct: 310 GVALWGVHMGMTQGLLAAMIADSSPADLRGTAYGLFSLVSGVALLLASAGAGLLWTTWGS 369
Query: 368 TVGFLYSAVMNVIAMIMMALL 388
F+ A + +I ++ + ++
Sbjct: 370 ESTFIAGAAICLITLLYLRVV 390
>pir||A72413 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980623|gb|AAD35224.1|AE001699_1 (AE001699)
conserved hypothetical protein [Thermotoga maritima]
Length = 384
Score = 150 bits (374), Expect = 3e-35
Identities = 109/380 (28%), Positives = 187/380 (48%), Gaps = 20/380 (5%)
Query: 13 VFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISD 72
+ LLGLVS D++ E I+ ++ L A G +GL E F+++ G +SD
Sbjct: 10 IVLLGLVSLFADVTYEGARSIIGPFMKT-LGASAAALGFAVGLGELTGYAFRLISGILSD 68
Query: 73 KFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSEK 132
K RK F LGY I+ + ALA +W L+L I +R GK +RT RD L++ +SE+
Sbjct: 69 KTRKYWLFTILGYAINLFAVPALAFAGNWQTALVLIIAERFGKALRTPARDVLLSFASEE 128
Query: 133 GKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVL 192
GK FG H +D +GA+ GPL LA E +YR+ F I +P ++ ++++L
Sbjct: 129 VGMGKGFGIHEALDQIGAILGPLALTFALAF------EKSYRFCFFILLIPALVAMVLLL 182
Query: 193 ---LLVKDKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLW--KAEELGYS 247
+ KKK + +L IV++ A + + K+ E+
Sbjct: 183 TARITFPALQEMKKKKDSPVDRNLGKTYWFYLAIVSMVAFAFADFPIIAYHMKSFEVAKD 242
Query: 248 VFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASL--IFAYANNLPTL 305
F Y+L + A++A G+ DK G + + + + L+S + +++N+ P +
Sbjct: 243 FFVP-ATYSLAMAVDAVAALVFGHLFDKKG---FVALAYAVL-LSSFFPVLSFSNSFPLI 297
Query: 306 LLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGYLWQTY 365
+L+G+ M +++I RA +A + ++G G + TV+GVF F S I+G L+
Sbjct: 298 FAGVILWGIGMGAQESIMRAVVAKIVPAEKRGFAYGMFFTVYGVFWFFGSWIMGTLYDIN 357
Query: 366 SLTVGFLYSAVMNVIAMIMM 385
+ L+S V+ A +++
Sbjct: 358 RFYL-ILFSFVIQFAAALLL 376
>pir||G69201 conserved hypothetical protein MTH761 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621850|gb|AAB85264.1| (AE000854) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 383
Score = 130 bits (323), Expect = 3e-29
Identities = 110/386 (28%), Positives = 184/386 (47%), Gaps = 33/386 (8%)
Query: 13 VFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISD 72
+ +LG+VS DM+ E I +L L G G E L + L GYISD
Sbjct: 8 IVILGIVSLFADMTYEGGRGITGPFLA-FLGASAFMVGFAAGFGELSGYLVRFLSGYISD 66
Query: 73 KFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSEK 132
+ + GYLI+ ++ LA +W ++L IL+R+GKG+RT PRDA+++ +S
Sbjct: 67 RTGRYWLITFAGYLINLLAVPLLAFAGNWQVAVLLIILERLGKGLRTPPRDAMLSYASYD 126
Query: 133 GKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVL 192
G FG H +D +GAVAGPL+ +LA Y + ++ L++ I VL+
Sbjct: 127 MGHGAGFGLHEALDQIGAVAGPLMVFIVLASGGGYRE----GFLVLLAPATIAIAVLVTG 182
Query: 193 LLVKDKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWKAEELGY-----S 247
L+ + SE++ + ++L V ALG + +GY S
Sbjct: 183 YLMFPRPSELEASGEIDYRDFRGAYWLYLASVCFVALGYADFPL-------IGYHLGVRS 235
Query: 248 VFQGLG---FYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFA---YANN 301
V YAL + ALSA G Y D+ G +++ +A L S+ +A +
Sbjct: 236 VLDPSNIPIIYALAMLTDALSALVSGRYFDRYGFRVM-----ALAVLVSMFYAPLSFLGG 290
Query: 302 LPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGYL 361
++ VL+G+ M ++++ RA ++ + +G+ G ++T+FGV F S+I+ YL
Sbjct: 291 SWAAVMGAVLWGVGMGAQESVMRAAVSAFSSPERRGSAYGTFNTIFGVAWFSGSLIMSYL 350
Query: 362 WQTYSLTVGFL--YSAVMNVIAMIMM 385
Y L+V L +S + A++++
Sbjct: 351 ---YGLSVPGLVAFSIITQSAALVIL 373
>gi|11499136 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430263|pir||D69442 conserved hypothetical protein
AF1541 - Archaeoglobus fulgidus
>gi|2649020|gb|AAB89705.1| (AE000996) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 372
Score = 129 bits (322), Expect = 4e-29
Identities = 107/376 (28%), Positives = 183/376 (48%), Gaps = 18/376 (4%)
Query: 13 VFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISD 72
+ L+GLVS D++ E IV YL + A G I G E ++L GYI+D
Sbjct: 8 ILLMGLVSLFGDITYEGARSIVGPYLATF-GLTAAAIGLITGFGEFAGYGLRLLSGYIAD 66
Query: 73 KFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSEK 132
+ LGY + ++ LA + WW +L + +R+GK IRT RDA+++ ++++
Sbjct: 67 RTGNYWLLTFLGYSL-ILAIPLLAFANYWWIAALLIVAERLGKAIRTPARDAMLSFATKQ 125
Query: 133 GKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVL 192
G FG H MD +GAV GPL+ + + LA Y + A+ +FL P ++ +L +
Sbjct: 126 VGRGTGFGIHEAMDQVGAVIGPLI---VFSALAGYTFKEAFIALFL----PALLVILFLF 178
Query: 193 LLVKDKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWKAEELGYSVFQGL 252
K + + +I+ + + ++ + V ++ G S F L GY + +
Sbjct: 179 ATWKLYPTPQRFEIEEQESRVEGSFWLYSLFVFLSVAGFLS--FPLLSYHLAGYVDLKLI 236
Query: 253 G-FYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLI-FAYANNLPTLLLAFV 310
YAL I A+SA G D++G K ++ + L LI A ++ +L+
Sbjct: 237 PLLYALAMGIDAISALISGRCYDRIGLKTLMLVPL----LTPLILLALHPSIIGVLVGVA 292
Query: 311 LYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGYLWQ-TYSLTV 369
+G M + + I RA +ADL ++ T G ++TVFGV + ++GYL+ + +L V
Sbjct: 293 AWGAVMGMHEAITRAAVADLTGVKKRSTAYGVFNTVFGVAMLAGGAVLGYLYDISAALLV 352
Query: 370 GFLYSAVMNVIAMIMM 385
GF+ + A ++M
Sbjct: 353 GFVLVVEVAAFATLLM 368
>pir||A72497 hypothetical protein APE2615 - Aeropyrum pernix (strain K1)
>gi|5106322|dbj|BAA81633.1| (AP000064) 388aa long
hypothetical protein [Aeropyrum pernix]
Length = 388
Score = 109 bits (269), Expect = 7e-23
Identities = 99/345 (28%), Positives = 158/345 (45%), Gaps = 29/345 (8%)
Query: 15 LLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKL--ASGSIMGLIESLSSLFKVLFGYISD 72
LLGLVS D++ E IV YL + L+ G + A+ S+ L+ ++ LF LF Y
Sbjct: 22 LLGLVSLFADLTYEGARGIVGPYL-EFLEAGLVVAAAVSVGDLVAYVARLFGGLFAYRVG 80
Query: 73 KFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSEK 132
V LGY ++ ++ LA W + +L +L+R GKG+R RDA++AE S
Sbjct: 81 SSGAYWGLVFLGYTVNLVAVPLLAFAGRWEEAFLLVLLERAGKGVRAPARDAILAEVSGG 140
Query: 133 GKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVL 192
G + H MD +GA+AGPL+ M L+ Y +F + VP ++ +L++
Sbjct: 141 LGRGVVYAVHEAMDQVGAIAGPLLVMAALS------SGFGYSGVFALLGVPALVSLLLLT 194
Query: 193 LLVKDKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWKAEELGYSVFQGL 252
L + ++K V AA G F W YSV QG+
Sbjct: 195 L-----AYILYPRLKSAEKPPGGYPPFGRVAPLAAAAGLSMAGFIHWIHASFRYSV-QGV 248
Query: 253 ------GFYALFNVIYALSAYPIGYYSDKVGKKII--ITIGFGIAGLASLIFAYANNLPT 304
G YA+ ++ AL+A +G DKV + ++ + I + LA L+ A
Sbjct: 249 DASLIAGAYAVAMLVDALAALALGVAYDKVTRGVVALVPIVAAASSLAVLLGA------P 302
Query: 305 LLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGV 349
L LA +L+G+ M ++ R+ +AD + +G G + G+
Sbjct: 303 LALAAILWGVAMGGFQSVFRSVVADSLEPRLRGLGFGVVYFAMGL 347
>sp|Q50697|YM65_MYCTU HYPOTHETICAL 41.9 KDA PROTEIN RV2265 >gi|7430264|pir||E70729
hypothetical protein Rv2265 - Mycobacterium tuberculosis
(strain H37RV) >gi|1449355|emb|CAB00970.1| (Z77163)
hypothetical protein Rv2265 [Mycobacterium tuberculosis]
Length = 409
Score = 107 bits (264), Expect = 3e-22
Identities = 90/393 (22%), Positives = 182/393 (45%), Gaps = 36/393 (9%)
Query: 13 VFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISD 72
V + G+V L D+ E I L + G L G + G+ E+ + +++ G ++D
Sbjct: 25 VTVFGVVGLLADVVYEGARSITGPLLASLGATG-LVVGVVTGVGEAAALGLRLVSGPLAD 83
Query: 73 KFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSEK 132
+ R+ A+ GY ++ ++ L + + W L I +R+GK +R +D L++ ++
Sbjct: 84 RSRRFWAWTIAGYTLTVVTVPLLGIAGALWVACALVIAERVGKAVRGPAKDTLLSHAASV 143
Query: 133 GKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVL 192
G+ F H +D +GA+ GPL G+LA+ N AY + +PG + ++L
Sbjct: 144 TGRGRGFAVHEALDQVGAMIGPLTVAGMLAITGN-----AYAPALGVLTLPGGAALALLL 198
Query: 193 LLVK-----DKGSEVKKKIKGISALK----SSNLRIFLVIVAIAALGRYSYAFTLWKAEE 243
L + + + + SA + + ++ AI LG ++ +
Sbjct: 199 WLQRRVPRPESYEDCPVVLGNPSAPRPWALPAQFWLYCGFTAITMLGFGTFGLLSF---- 254
Query: 244 LGYSVFQGLGFYALFNVIY-------ALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIF 296
+ V G+ A+ V+Y AL+A G+ D+ G K + + I + ++F
Sbjct: 255 --HMVSHGVLAAAMVPVVYAAAMAADALTALASGFSYDRYGAKTLAVL--PILSILVVLF 310
Query: 297 AYANNLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASI 356
A+ +N+ +++ +++G + I+++ R +ADL + + G + G
Sbjct: 311 AFTDNVTMVVIGTLVWGAAVGIQESTLRGVVADLVASPRRASAYGVFAAGLGAATAGGGA 370
Query: 357 IVGYLWQTYSLTVGFLYSAVMNVIAMIMMALLI 389
++G+L Y +++G L V+ VIA+ +MAL++
Sbjct: 371 LIGWL---YDISIGTL---VVVVIALELMALVM 397
>pir||E75048 multidrug resistance protein PAB0913 - Pyrococcus abyssi (strain
Orsay) >gi|5458795|emb|CAB50282.1| (AJ248287) multidrug
resistance protein [Pyrococcus abyssi]
Length = 410
Score = 89.7 bits (219), Expect = 5e-17
Identities = 104/391 (26%), Positives = 171/391 (43%), Gaps = 46/391 (11%)
Query: 12 NVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGS--IMGLIESL----SSLFKV 65
N+ + + F D + + P + Y+ KL G+ ++GL+ + S++F+
Sbjct: 27 NILMFAIGMFFADFAWGLGFPYLGVYM-------KLIGGTMFLVGLLSVVYNLTSTIFQY 79
Query: 66 LFGYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILD-RIGKGIRTAPRDA 124
FGY+SDK KRK F+ LG L S + G +A+ S L LR +G + A A
Sbjct: 80 PFGYLSDKTGKRKPFIILGILASGTTYGLVALITSPILLLGLRAFQGALGASLAPA-HSA 138
Query: 125 LIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPG 184
LI+E S + G FGF ++ LG +AG ++ K L + +F+I+++
Sbjct: 139 LISELSP--RIGSMFGFFGFVENLGFMAGNFAGGYIV-------KTLGMKMMFIITSLVS 189
Query: 185 VIGVLIVLLLVKDKG------------------SEVKKKIKGISALKSSNLRIFLVIVAI 226
+IG+L LL +K++G V+ K L L IF V V +
Sbjct: 190 LIGILF-LLKIKERGRAKAGGDRLIIVKEGRESDRVELKEIAFKKLMKGRLGIFYVAVLL 248
Query: 227 AALGRYS-YAFTLWKAEELGYSVFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIG 285
A + + YA EE F G + + ++ ALSA IG DK G+K+ +
Sbjct: 249 AMIASGAVYATVSVYFEEKFGEEFVGY-LFGIDSLSAALSALIIGRLIDKYGEKLFFRLS 307
Query: 286 FGIAGLASLIFAYANNLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHT 345
+ + +A AN++ + L +L GL + Y+A E+G +G +T
Sbjct: 308 LVGYIITFMGYALANSVIIMALISILSGLKWTMLTNSSSTYVARRVPTSERGQGMGLLNT 367
Query: 346 VFGVFVFPASIIVGYLWQTYSLTVGFLYSAV 376
+ + +I G L + V LYS V
Sbjct: 368 MMTLGWVIGPLIGGILADNFGFAV-MLYSTV 397
>gb|AAG18975.1| (AE004998) multidrug resistance protein homolog; YfmO2
[Halobacterium sp. NRC-1]
Length = 420
Score = 89.7 bits (219), Expect = 5e-17
Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 27/359 (7%)
Query: 47 LASGSIMGLIESLSSLFKVLFGYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLI 106
L G ++ L+S + G +SD+ RK F+ G ++ ++ GA A + L+
Sbjct: 63 LLIGIVLSTFGFLNSFLQPFTGRLSDRTGVRKPFILGGLVLLALASGAYAFVSDYRLLLV 122
Query: 107 LRILDRIGKGIRTAPRDALIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLAN 166
LR L IG + AL++E G +FG +G GP++A +L +
Sbjct: 123 LRALQGIGAALTVPATVALVSELGTTETRGSNFGVFNTFRLIGFGFGPIIAGVVLEV--- 179
Query: 167 YPKELAYRYIFLISAVPGVIGVLIVLLLV-------KDKGSEVKKKIKGISALKSSNLRI 219
++ F ++A + ++V L V D G ++ ++G A+ +
Sbjct: 180 ----FSFNAAFGVAAAGALTSFVLVELTVDEPDTDGADAGDDLSIAVRGDDAVLDP---V 232
Query: 220 FLVIVAIAALGRYSYAFTLWKAEELG----YSVFQGLGFYA--LFNVIYALSAYPIGYYS 273
F + +A A+G F +A+ G S+ G F A L NV++ + PIG S
Sbjct: 233 FALGIATVAMGICIAMFATLEAKINGKLDQSSILFGAEFGAVTLANVMFQV---PIGTAS 289
Query: 274 DKVGKKIIITIGFGIAGLASLIFAYANNLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKE 333
D G++ I GF I A++ YA T++LA + G+ +A A DLA
Sbjct: 290 DTYGRRPFIIAGFIILIPATIAQGYAPTPATMILARFVQGIAVAAVFAPSLAVAGDLAGA 349
Query: 334 FEKGTVIGAYHTVFGVFVFPASIIVGYLWQTYSLTVGFLYSAVMNVIAMIMMALLIKES 392
E G+ + FG+ + G+L Y L FL V+ +A+ ++ + E+
Sbjct: 350 GESGSTLAVLTMGFGLGTAIGPLASGFL-AAYGLATPFLIGGVLAALALAVVYTQVYET 407
>pir||H71070 hypothetical protein PH1260 - Pyrococcus horikoshii
>gi|3257679|dbj|BAA30362.1| (AP000005) 372aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 372
Score = 86.2 bits (210), Expect = 6e-16
Identities = 96/380 (25%), Positives = 171/380 (44%), Gaps = 34/380 (8%)
Query: 13 VFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISD 72
+ +L + ++ + S M P + L L I G +M + SL +V GYI D
Sbjct: 6 ILILISLGWIFNYSHRMAVPSLAPILMKELSINNTEVGLLMTALLLPYSLIQVPAGYIGD 65
Query: 73 KFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSEK 132
K RK + L L +IS + + ++WD + +R L G+ AP +LI+E +
Sbjct: 66 KI-GRKKLLTLSILGYSISSALIVLARNYWDLVAIRALYGFFAGLYYAPATSLISELFRE 124
Query: 133 GKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLI-SAVPGVIGVLIV 191
K G + GF + +G+ PL+ + +AL+ N +R FL+ S + ++GVL+V
Sbjct: 125 -KKGSALGFFMIGPAIGSGITPLIVVP-VALMLN------WRLSFLVLSIMSSIVGVLLV 176
Query: 192 LLLVKDKGSEVKKK----IKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWKAEELGYS 247
L VK + EV++ KG+ L +N FL + A A+ + ++ + K G
Sbjct: 177 -LTVKGEPVEVERAKFSIPKGVLLLSLAN---FLGLGAFFAMLTFLVSYLVSK----GVD 228
Query: 248 VFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYANNLPTLLL 307
+ + +++ +++ + G+ D GK + L LI + L + L
Sbjct: 229 IKEASLMFSILSLVGVFGSVTAGFLYDYAGKVSVFLAYLLNFLLTFLIIVFPTPLLLIPL 288
Query: 308 AFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTV--FGVFVFPASI-----IVGY 360
VLY + I AY A+ A++ G V+G + V FG P + +GY
Sbjct: 289 GLVLYSV-----GGIITAYTAEKAEKSNLGVVMGFVNMVGFFGATTGPYVVGFLIDKLGY 343
Query: 361 LWQTYSLTVGFLYSAVMNVI 380
S+ + +L SA++ ++
Sbjct: 344 SRALLSVPLAYLVSALIIIV 363
>pir||G64494 quinolone resistance protein norA homolog - Methanococcus
jannaschii >gi|1592184|gb|AAB99579.1| (U67596)
multidrug-efflux transporter (bmr1) [Methanococcus
jannaschii]
Length = 386
Score = 85.8 bits (209), Expect = 8e-16
Identities = 90/386 (23%), Positives = 162/386 (41%), Gaps = 14/386 (3%)
Query: 12 NVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYIS 71
NVF++ + +F + IAPI+ Y L L G I G ++ ++ G +S
Sbjct: 7 NVFVIWITTFTTMLGVGFIAPIMAIY-AQTLGATNLEIGLIFGSFALARTVAQIPVGVLS 65
Query: 72 DKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSE 131
D + K K F+ G +S + FLI+RI I T + IA +
Sbjct: 66 DIYGK-KFFIVCGTFFYGVSTLMYNFVSTVLGFLIVRIFTGIFSAFVTPVAGSYIAAIAP 124
Query: 132 KGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIV 191
K + G+ G TLG GP + G+LA + Y ++ + + + + +I + +
Sbjct: 125 KTRLGEYMGIFNSAITLGFGIGPFIG-GILADM--YGIKMPFYFCGFLGILAAIISYMKL 181
Query: 192 LLLVKDKGSEVKKKIKGISAL------KSSNLRI-FLVIVAIAALGRYSYAFTLWKAEEL 244
+V +K E K +K IS L K+ N F++ V+ + YA+ A
Sbjct: 182 EDIVFNKNKE-KIDVKKISTLFSFEFLKNRNFSSSFIINVSNVMINAGIYAYLALYAINY 240
Query: 245 GYSVFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYANNLPT 304
++ Q AL N++ AL G DK+G I+I IG I + + + T
Sbjct: 241 NITISQVGFMIALTNILMALLQRSFGKLYDKLGN-IMIIIGIFIISFGMYLLSTSTTFLT 299
Query: 305 LLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGYLWQT 364
+L + + + +I T + KG +G + T + +F ++ G+L
Sbjct: 300 ILASLTIIAVGSSISSTATTSLAVKDIPTHRKGEAMGLFTTSINIGMFIGAVSFGFLADI 359
Query: 365 YSLTVGFLYSAVMNVIAMIMMALLIK 390
+ + +SA+ +++ I+ L I+
Sbjct: 360 LGIANMYKFSAIFSIVVGIISYLRIE 385
>pir||D75094 transport protein, permease PAB0761 - Pyrococcus abyssi (strain
Orsay) >gi|5458569|emb|CAB50057.1| (AJ248286) TRANSPORT
PROTEIN, permease [Pyrococcus abyssi]
Length = 372
Score = 85.8 bits (209), Expect = 8e-16
Identities = 92/392 (23%), Positives = 177/392 (44%), Gaps = 41/392 (10%)
Query: 13 VFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISD 72
+ +L + ++ + S M P + + L I G +M + SL +V GYI D
Sbjct: 6 ILILISLGWIFNYSHRMAVPSLAPIIMKDLGINNAEIGLLMTSLLLPYSLIQVPAGYIGD 65
Query: 73 KFRKRKAFVA--LGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESS 130
K ++K LGY ++S + +T +WD + +R L G+ AP ALI+E
Sbjct: 66 KIGRKKLLTISILGY---SLSSALIVLTRDYWDLVTVRALYGFFAGLYYAPATALISELF 122
Query: 131 EKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLI-SAVPGVIGVL 189
+ K G + GF + +G+ PL+ + + L++RY FL+ S + ++G
Sbjct: 123 RERK-GSALGFFMVGPAIGSGITPLIVVPVAL-------TLSWRYAFLVLSIMSSIVG-- 172
Query: 190 IVLLLVKDKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWKAEELGYSVF 249
+LL+V KG + K++G+ K L + LG + T + Y V
Sbjct: 173 -ILLMVAIKGEPI--KVEGVK-FKIPRGVFLLSLANFLGLGAFFAMLTFL----VSYLVS 224
Query: 250 QGLG------FYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLAS-LIFAYANNL 302
+G+G +++ +++ L + G+ D +G K+ + + + + L + L+ + L
Sbjct: 225 RGVGMEKASLMFSMLSLVGILGSIIAGFLYDHLG-KVSVLLAYALNSLLTFLVIVIPSPL 283
Query: 303 PTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTV--FGVFVFPASIIVGY 360
+ L VLY + I AY ++ A G V+G + V FG + P IVG+
Sbjct: 284 FLIPLGLVLYSV-----GGIMTAYTSEKASRENLGVVMGFVNMVGFFGATIGP--YIVGF 336
Query: 361 LWQTYSLTVGFLYSAVMNVIAMIMMALLIKES 392
L ++ L + +++ +++ L ++++
Sbjct: 337 LIDRLGYSLALLSVPLAYLVSAVIIGLDLRKT 368
>gb|AAK41391.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 383
Score = 83.1 bits (202), Expect = 5e-15
Identities = 81/382 (21%), Positives = 169/382 (44%), Gaps = 17/382 (4%)
Query: 13 VFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISD 72
V + +F D+ + + P I K G L + ++ G D
Sbjct: 8 VLKISFSAFFADLGYQAVVASFPIIFVLIFKAPIPLYGFAEALNYGIGTVMAYAGGLAGD 67
Query: 73 KFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAESSEK 132
+F +++ + LI S + ++ + LI ++ + R+ PR A++AE +
Sbjct: 68 RFGRKRIAILGNVLILFTS--LIGLSRDYIQALIFFMIGWWFRNFRSPPRRAMMAEVTSP 125
Query: 133 GKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVL 192
+ ++FG +D +AG L+A+ L +L ++ ++ L +++P ++ +++
Sbjct: 126 EERSEAFGILHSLD----IAGALIAIIYLTVLLYL--RVSIFFVLLFTSIPLLMSTIVLT 179
Query: 193 LLVKDKGSEVKKKIKGISALKSSNLRIFLVIV---AIAALGRYSYAFTLWKAEELGYSVF 249
++ K SE K+ + S K + R+F ++ +YS+ F + E+ +
Sbjct: 180 MVNAGKKSEKAKRKEAES--KITQKRVFWTLILSTMFFGFSQYSFGFPILTTTEITGKEY 237
Query: 250 QGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYANNLPTLLL-- 307
G+ Y +F +L Y G K + + +G+ I L SL FAY ++ L
Sbjct: 238 LGVLSYGIFLGASSLFGYLFGRIRMKEFESLAF-LGYLIGALGSLGFAYLSSFGVFSLYP 296
Query: 308 AFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGYLWQTYSL 367
L G +A +T ++ + KE T +G + +F ++I+G+L+Q S
Sbjct: 297 LSFLMGTSVASTETFEPTIISKITKEEAFSTSMGYLSAGRSIGIFLGNVIMGFLYQ-ISY 355
Query: 368 TVGFLYSAVMNVIAMIMMALLI 389
T +L++A+ ++I+ ++ LI
Sbjct: 356 TYAYLFAAITSLISFALILNLI 377
>gi|11498923 multidrug resistance protein [Archaeoglobus fulgidus]
>gi|7483887|pir||D69415 multidrug resistance protein
homolog - Archaeoglobus fulgidus
>gi|2649251|gb|AAB89920.1| (AE001012) multidrug
resistance protein [Archaeoglobus fulgidus]
Length = 371
Score = 81.1 bits (197), Expect = 2e-14
Identities = 88/366 (24%), Positives = 159/366 (43%), Gaps = 25/366 (6%)
Query: 18 LVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLFKVLFGYISDKFRKR 77
L F S + PI+PSY + L S G+ ++ FG +S+ + +R
Sbjct: 6 LSGFFAYASLSCVIPIIPSYASS-LGASVFLSAFAAGVFALFPAIAMTPFGMLSEVYGRR 64
Query: 78 KAFVALGYLISTISKGALAVTHSWWDFLIL-RILDRIGKGIRTAPRDALIAESSEKGKSG 136
+ VA ++++ L + S + L+ R L +G + +AL+A+ SE+ + G
Sbjct: 65 RFLVAGA--VTSLLASLLYLQSSTAELLVFSRTLHGLGSALYIPSINALVADISEESRRG 122
Query: 137 KSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVLLLVK 196
++ G + LG AGPL A G ++ +F +A+ V+GV +
Sbjct: 123 EAMGKLQTALMLGFFAGPL-AGGFVSDFFGVKAVFLLALVFSAAALVPVVGV-----RER 176
Query: 197 DKGSEVKKKIKGISALKSSNLRIFLVIVAIAALGRYSYAFTLWKAEELGYSVFQGLGFYA 256
KG E+ K+ L +F+ + ++L ++ F A EL S Q A
Sbjct: 177 SKGGEIGKQFIFPRKLAPLFAVMFVGMATGSSLALFAIPF---YAPELNISQQQAGLLVA 233
Query: 257 LFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYANNLPTLLLAFVLYGLYM 316
+ + A+ P G +D+ G+ + +G + GL L A+ + P L LA +L G
Sbjct: 234 VLFLFSAIIRVPAGILADRAGRNVTALLGMVVTGL-GLFSAFKPDFPFLFLASLLCGAGN 292
Query: 317 AIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGYLWQTYSLTVGFL-YSA 375
I +T A +D +G +G +TV +F + + G++ GFL + +
Sbjct: 293 GIVNTAVFAAASDYE---NRGYAMGVANTVLNAGIFAGTTLAGFM-------AGFLSFQS 342
Query: 376 VMNVIA 381
+M ++A
Sbjct: 343 MMLILA 348
>gb|AAK41264.1| Transport conserved hypothetical protein [Sulfolobus solfataricus]
Length = 396
Score = 78.8 bits (191), Expect = 1e-13
Identities = 105/393 (26%), Positives = 163/393 (40%), Gaps = 32/393 (8%)
Query: 15 LLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMG-LIESLSSLFKVLFGYISDK 73
L L F+ND +S + P+ +L L I K G + G +S+L L I+DK
Sbjct: 8 LTSLSHFINDGNS-WVLPVTFIFLITYLGISKFLIGILSGAFFFGISALASPLVSKIADK 66
Query: 74 FRKRKAFVALGYL---ISTISKGALAVTHSWWDFLILRILDRIGKGIRTA---PRDALIA 127
F + + +G L I IS G H FL L + G +A P A +
Sbjct: 67 FTNYSSIMGIGILLWGIGLISFGYSIQLH----FLPLVFISVAIAGFASAFYHPIGAAVL 122
Query: 128 ESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIG 187
+ KG +G + G + M +LG P + + L A+L N L I +IS + +
Sbjct: 123 SITYKGNAGIALGINGSMGSLGRAIYPTLTLSLFAIL-NKDMTLDMLIIGIISIIAALPS 181
Query: 188 VLIVLLLVKDKGSEVKKKIKGISALKSSNLRIFLVIVA----IAALGRYSYAFTLWKAEE 243
+ + + + K++ + S + + I L I+A I G + TL E
Sbjct: 182 IFLKISITKEEDHKTPSSSNTTSTRGTLFVVILLTIIALLRSIFGQGISQFLPTLL-VEN 240
Query: 244 LGYSVFQGLGFYALFNVIYALSAYPI-GYYSDKVGKKIIITIGFGIAGLASLIFAYANNL 302
GYS LG + A+ PI G+ SD+VG+++I I A L L+F N+
Sbjct: 241 YGYSYNVNLGEAITIALAAAIVGQPILGFLSDRVGRRLIYAISTFGAALTLLLFLKIPNI 300
Query: 303 PTLLL----AFVLYGLYMAI-EDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASII 357
L L F + L ++I D +PR + F V G T GV I+
Sbjct: 301 ALLSLFGFFNFSAFPLMLSIVGDFVPRN-----SASFANSLVWGLGVTGGGVI---GPIV 352
Query: 358 VGYLWQTYSLTVGFLYSAVMNVIAMIMMALLIK 390
VG + Q +L +M +A + AL+ K
Sbjct: 353 VGAVSQVSNLVFASEIVTIMAFVAGALTALIPK 385
>gb|AAB31949.1| (S74031) NorA {ISP794, quinolone resistance} [Staphylococcus
aureus, NCTC 8325, Peptide Insertion, 388 aa]
Length = 388
Score = 77.3 bits (187), Expect = 3e-13
Identities = 86/405 (21%), Positives = 187/405 (45%), Gaps = 46/405 (11%)
Query: 4 RKVFGISWNVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLF 63
+++F + +N+FL+ L ++ P++P YL D+ +GS +GL+ + +L
Sbjct: 3 KQIFVLYFNIFLIFL-------GIGLVIPVLPVYLKDLG-----LTGSDLGLLVAAFALS 50
Query: 64 KVLF----GYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRT 119
+++ G ++DK K K + +G ++ ++S+ AV H++ ++ R++ + G+
Sbjct: 51 QMIISPFGGTLADKLGK-KLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGGMSAGMVM 109
Query: 120 APRDALIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLI 179
LIA+ S + K+FG+ + G + GP + G +A E+++R F
Sbjct: 110 PGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIG-GFMA-------EVSHRMPFYF 161
Query: 180 SAVPGVIGVLIVLLLVKDKGSEVKKKIKGI--SALKSSNLRIF-----LVIVAIAALGRY 232
+ G++ ++ ++L+ D + + L N ++F L +V L +
Sbjct: 162 AGALGILAFIMSIVLIHDPKKSTTSGFQKLEPQLLTKINWKVFITPVILTLVLSFGLSAF 221
Query: 233 SYAFTLWKAEELGYS------VFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGF 286
++L+ A+++ YS G G + IY + + Y+S+ I ++ +
Sbjct: 222 ETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKF-MKYFSELT--FIAWSLLY 278
Query: 287 GIAGLASLIFAYANNLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTV 346
+ L L+FA + +L++FV++ + I I Y +++A E +G G T
Sbjct: 279 SVVVLILLVFA-NDYWSIMLISFVVFIGFDMIRPAITN-YFSNIAGE-RQGFAGGLNSTF 335
Query: 347 FGVFVFPASIIVGYLWQTYSLTVGFLYSAVMNVIAMIMMALLIKE 391
+ F +I G L+ + +Y A+ +A +++ L+ K+
Sbjct: 336 TSMGNFIGPLIAGALFDVH--IEAPIYMAIGVSLAGVVIVLIEKQ 378
>sp|P21191|NORA_STAAU QUINOLONE RESISTANCE NORA PROTEIN >gi|97835|pir||A37838 norA
protein - Staphylococcus aureus
>gi|216975|dbj|BAA14147.1| (D90119) ORF for norA
[Staphylococcus aureus]
Length = 388
Score = 76.9 bits (186), Expect = 4e-13
Identities = 86/405 (21%), Positives = 186/405 (45%), Gaps = 46/405 (11%)
Query: 4 RKVFGISWNVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLF 63
+++F + +N+FL+ L ++ P++P YL D+ +GS +GL+ + +L
Sbjct: 3 KQIFVLYFNIFLIFL-------GIGLVIPVLPVYLKDLG-----LTGSDLGLLVAAFALS 50
Query: 64 KVLF----GYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRT 119
+++ G ++DK K K + +G ++ ++S+ AV H++ ++ R++ + G+
Sbjct: 51 QMIISPFGGTLADKLGK-KLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGGMSAGMVM 109
Query: 120 APRDALIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLI 179
LIA+ S + K+FG+ + G + GP + G +A E+++R F
Sbjct: 110 PGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIG-GFMA-------EVSHRMPFYF 161
Query: 180 SAVPGVIGVLIVLLLVKDKGSEVKKKIKGI--SALKSSNLRIF-----LVIVAIAALGRY 232
+ G++ ++ ++L+ D + + L N ++F L +V L +
Sbjct: 162 AGALGILAFIMSIVLIHDPKKSTTSGFQKLEPQLLTKINWKVFITPVILTLVLSFGLSAF 221
Query: 233 SYAFTLWKAEELGYS------VFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGF 286
++L+ A+++ YS G G + IY + + Y+S+ I ++ +
Sbjct: 222 ETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKF-MKYFSELT--FIAWSLLY 278
Query: 287 GIAGLASLIFAYANNLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTV 346
+ L L+FA +L++FV++ + I I Y +++A E +G G T
Sbjct: 279 SVVVLILLVFA-NGYWSIMLISFVVFIGFDMIRPAITN-YFSNIAGE-RQGFAGGLNSTF 335
Query: 347 FGVFVFPASIIVGYLWQTYSLTVGFLYSAVMNVIAMIMMALLIKE 391
+ F +I G L+ + +Y A+ +A +++ L+ K+
Sbjct: 336 TSMGNFIGPLIAGALFDVH--IEAPIYMAIGVSLAGVVIVLIEKQ 378
>pir||D71112 hypothetical protein PH0667 - Pyrococcus horikoshii
>gi|3257075|dbj|BAA29758.1| (AP000003) 413aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 413
Score = 75.3 bits (182), Expect = 1e-12
Identities = 93/377 (24%), Positives = 168/377 (43%), Gaps = 44/377 (11%)
Query: 37 YLTDILKI--GKLASGSIMGLIESLSS-LFKVLFGYISDKFRKRKAFVALGYLISTISKG 93
YLT +KI G + ++ +I +L+S +F+ FGY+SDK KRK F+ LG L S +
Sbjct: 51 YLTVYMKIIGGTMFLVGLLSVIYNLTSAIFQYPFGYLSDKIGKRKPFIILGVLFSGTT-- 108
Query: 94 ALAVTHSWWDFLILRILDRIGK-GIRTAP-RDALIAESSEKGKSGKSFGFHRMMDTLGAV 151
+ V L+L + G G AP ALI+E S + G FGF ++ +G +
Sbjct: 109 YVLVIFISTPILLLSLRGTQGALGASFAPAHSALISELST--RVGSMFGFFNFVENMGFM 166
Query: 152 AGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIGVLIVLLLVKDKGSEVKKKIKGI-- 209
G + ++ K++ + FL ++ ++ ++ +L L + K E KKK G
Sbjct: 167 VGNFLGGYIV-------KKVGIKSAFLATS---IVSLVSILFLTQVKERERKKKNIGSFL 216
Query: 210 ----------SALKSSNLRIFL----------VIVAIAALGRYSYAFTLWKAEELGYSVF 249
+KSS ++ + V++A+ A G ++ E+ G F
Sbjct: 217 PIREGRESEKVEMKSSAFKMLMKGELGAFYLSVLLAMIASGEVYATVPVYFQEKFG-EEF 275
Query: 250 QGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGFGIAGLASLIFAYANNLPTLLLAF 309
G + ++ AL + IG DK G+K+ + L + +A+A + + L
Sbjct: 276 VGF-LLGIDSLAAALGSLLIGRLIDKYGEKVFYKLAILGYILTFIGYAWATTIIIMALVS 334
Query: 310 VLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTVFGVFVFPASIIVGYLWQTYSLTV 369
+L G+ A+ + Y+A E+G +G +T+ + +I G + + +V
Sbjct: 335 LLSGVKWAMITSSASTYVARRVPHRERGQGMGLLNTMMTLGWVIGPLIGGLIADNFGFSV 394
Query: 370 GFLYSAVMNVIAMIMMA 386
LYS + +I ++A
Sbjct: 395 -MLYSTTLPLIVSFLLA 410
>emb|CAC11594.1| (AL445064) sugar transport protein related protein [Thermoplasma
acidophilum]
Length = 486
Score = 73.4 bits (177), Expect = 4e-12
Identities = 80/371 (21%), Positives = 169/371 (44%), Gaps = 57/371 (15%)
Query: 68 GYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIA 127
G++SD+ +++ + I+++ A++ S+++F I +L IG G ++ A
Sbjct: 121 GHLSDRIGRKRMYT-YDLAITSVFLVLTALSTSFYEFFIFELLAGIGIGADYPLSSSIEA 179
Query: 128 ESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPGVIG 187
E S + G+ F+ M T+G++ ++++ L+ + ++R+++ + A+ V+
Sbjct: 180 EFSPRRSRGRFLVFNIFMWTIGSIVFYVISIPLIFRFGSE----SWRWMYGVGAIVPVVV 235
Query: 188 VLI--------VLLLVKDKGSEVKKKI------------------KGISALKSSNLRIFL 221
+L L+ K SE K KG S+ +S +L
Sbjct: 236 ILARRALPESPYWLVKAGKDSEAKTVADSMGREAGYTDVDLPNVEKGSSSFRSVFSGSYL 295
Query: 222 VIVAIAALGRYSYAFTLWKAEELGYSVFQGLGFYALFNVIYALSA---YPIGYYS----- 273
++ A+L +SY + + S+F +G A+ +++ L +G+
Sbjct: 296 PLIIFASLAWFSYDVSSYGVWNYTPSIFVSVGVSAVSSILSTLLEDLPVIVGFIICLLLI 355
Query: 274 DKVGKKIIITIGFGIAGLASLIFA-YANN--LPTLLL--AFVLYGLYMAIEDT-IPRAYM 327
++VG+KI+ ++GFG+AG++ L FA YA++ LP ++L AF + L+ I T + Y
Sbjct: 356 ERVGRKILQSVGFGLAGVSLLSFALYADHRTLPFIMLFTAFAMMHLFHNIGPTNLTYVYP 415
Query: 328 ADLAKEFEKGTVIG------AYHTVFGVFVFPASIIVGYLWQTYSLTVGFLYSAVMNVIA 381
++ +GT +G + GVF FP + + ++ ++ A+ +
Sbjct: 416 VEIFPTRIRGTAMGIATAASRIGAILGVFAFP------LITASMGMSASLMFFAIFEFVG 469
Query: 382 MIMMALLIKES 392
I+ +L E+
Sbjct: 470 FIVTVVLAPET 480
>sp|P54559|YQJV_BACSU HYPOTHETICAL 44.7 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
>gi|7475632|pir||F69965 multidrug resistance protein
homolog yqjV - Bacillus subtilis
>gi|1303973|dbj|BAA12628.1| (D84432) YqjV [Bacillus
subtilis] >gi|2634808|emb|CAB14305.1| (Z99116) similar
to multidrug resistance protein [Bacillus subtilis]
Length = 410
Score = 71.0 bits (171), Expect = 2e-11
Identities = 72/355 (20%), Positives = 150/355 (41%), Gaps = 28/355 (7%)
Query: 2 KERKVFGISWNVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSS 61
K + + ISW + ++G + M++ M P + YLT + +G ++ S+
Sbjct: 3 KWKDIHPISWTI-IIGTI--FGRMATSMSIPFLAIYLTAVQGASASYAGLVIAASSSVGI 59
Query: 62 LFKVLFGYISDKF-RKRKAFVAL-GYLISTISKGALAVTHSWWDFLILRILDRIGKGIRT 119
L GYISDKF RK V++ G+++ A + W F ++ L+ + K +
Sbjct: 60 LASFYGGYISDKFGRKNMMLVSIFGWMLVF---AGFAAASNLWVFFVVNALNGLCKSLFE 116
Query: 120 APRDALIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLI 179
AL+++ +E+ F +G V GP++ + + + P FL+
Sbjct: 117 PASKALLSDMTEEKTRLLVFNLRYAAINIGVVFGPVLGLYFGSSQSTTP--------FLV 168
Query: 180 SAV-PGVIGVLIVLLLVKDKGSEVKKKIKGIS-------ALKSSNLRIFLVIVAIAALGR 231
AV G+ G+++ L K + + +S K I LV + + G
Sbjct: 169 PAVIYGLYGIVLALQFKKHPSLSAPAQSRNMSVREAFMVTQKDYLFTIALVGITLCTFGY 228
Query: 232 YSYAFTLWKAEELGYSVFQGLGFYALFNVIYAL----SAYPIGYYSDKVGKKIIITIGFG 287
++ T + + G Y L + A+ + +PI +++ + + +G
Sbjct: 229 SQFSSTFPQYMAQNPLIGNGTKLYGLMLTLNAIVVLATQFPIVHFAKRFSPLCSLMLGNV 288
Query: 288 IAGLASLIFAYANNLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGA 342
+ ++ IF ++ +P++++ + + + + ++ Y+ +AK KGT GA
Sbjct: 289 MVSISMAIFTVSHGVPSIVMIVITFTIGEVLLFSMMDLYVDQIAKPGLKGTYFGA 343
>pir||D71144 hypothetical protein PH0367 - Pyrococcus horikoshii
>gi|3256758|dbj|BAA29441.1| (AP000002) 457aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 457
Score = 70.2 bits (169), Expect = 4e-11
Identities = 90/418 (21%), Positives = 184/418 (43%), Gaps = 58/418 (13%)
Query: 13 VFLLGLVSFLNDMSSEMIAPIVPSYLTDILK---IGKLASGSIMGLIESLSSLFKVLFGY 69
+ L+ + +FL M+ + + P P+Y I+K IG+ G + + + S+L +++G
Sbjct: 24 ILLVLMATFL--MADQNLLP--PNY-QQIMKEFGIGETQMGFVSSIFVATSALITIIWGM 78
Query: 70 ISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRTAPRDALIAES 129
++D ++RK + +G L+ I A HS+W L +R L IG G +LIA+
Sbjct: 79 LAD-IKQRKKLLVIGVLLGEIPCFLTAYVHSYWQLLTMRFLTGIGIGSIIPIGYSLIADM 137
Query: 130 SEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLISAVPG-VIGV 188
E+ K G+ + + G + G ++A G++ ++R F+I+AVP ++
Sbjct: 138 FEEEKRGRGYSYIETAFGFGTLFGMIIA-GVIT---------SWRTPFIIAAVPNFILAP 187
Query: 189 LIVLLLVKDKGSEVKKKIK-------------GISALKSS-----NLRIFLV-IVAIAAL 229
L ++ + + E +++I+ + A+K S N+ IFL I+
Sbjct: 188 LFYIIAEEPRRGEGEREIRVLIEKGYEYAYKLSLEAVKKSLKTRTNILIFLQGIIGTVPW 247
Query: 230 GRYSYAFTLWKAEELGYSVFQGLGFYALFNVIYALSAYPIGYYSD-----KVGKKIIIT- 283
G Y + G + + L + G+ D K G + +IT
Sbjct: 248 GILMYWLISFLQVTRGMDKQTATFMLLIIGIASVLGSLFGGFVGDYFETRKRGGRAVITG 307
Query: 284 --IGFG-IAGLASLIFAYANNLPT-----LLLAFVLYGLYMAIEDTIPRAYMADLAKEFE 335
I G IA + +++ + L T L + +L+ +++ RA ++ + +
Sbjct: 308 IAIFLGMIAAIGLILYPLPSKLNTIHWLGLTVYSILFIQFVSYAGPNVRAIVSQVNLPED 367
Query: 336 KGTVIGAYHTVFGVFVFPASIIVGYLWQT-----YSLTVGFLYSAVMNVIAMIMMALL 388
+GTV G ++ + V ++ G+L +T Y+ + + Y+ ++ + + AL+
Sbjct: 368 RGTVFGLFNILDNVGKAIGPVLGGFLIETLVQMGYTKPLAYQYTLLIGTLFWVPCALV 425
>dbj|BAA36484.1| (AB019536) NorA [Staphylococcus aureus]
Length = 388
Score = 69.5 bits (167), Expect = 6e-11
Identities = 82/405 (20%), Positives = 184/405 (45%), Gaps = 46/405 (11%)
Query: 4 RKVFGISWNVFLLGLVSFLNDMSSEMIAPIVPSYLTDILKIGKLASGSIMGLIESLSSLF 63
+++F + +N+FL+ L ++ P++P YL D+ +GS +GL+ + +L
Sbjct: 3 KQIFVLYFNIFLIFL-------GIGLVIPVLPVYLKDLG-----LTGSDLGLLVAAFALS 50
Query: 64 KVLF----GYISDKFRKRKAFVALGYLISTISKGALAVTHSWWDFLILRILDRIGKGIRT 119
+++ G ++DK K K + +G ++ ++S+ AV H++ ++ R++ + G+
Sbjct: 51 QMIISPFGGTLADKLGK-KLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGGMSAGMVM 109
Query: 120 APRDALIAESSEKGKSGKSFGFHRMMDTLGAVAGPLVAMGLLALLANYPKELAYRYIFLI 179
LIA+ S + K+FG+ + G + GP + G +A E+++R F
Sbjct: 110 PGVTGLIADVSPSHQKAKNFGYMSAIINSGFILGPGIG-GFMA-------EVSHRMPFYF 161
Query: 180 SAVPGVIGVLIVLLLVKDKGSEVKKKIKGI--SALKSSNLRIF-----LVIVAIAALGRY 232
+ G++ ++ ++L+ D + + L N ++F L +V L +
Sbjct: 162 AGALGILAFIMSVVLIHDPKKSTTSGFQKLEPQLLTKINWKVFITPAILTLVLAFGLSAF 221
Query: 233 SYAFTLWKAEELGYS------VFQGLGFYALFNVIYALSAYPIGYYSDKVGKKIIITIGF 286
++L+ + ++ YS G G + IY + + Y+S+ I ++ +
Sbjct: 222 ETLYSLYTSYKVNYSPKDISIAITGGGIFGALFQIYFFDKF-MKYFSELT--FIAWSLIY 278
Query: 287 GIAGLASLIFAYANNLPTLLLAFVLYGLYMAIEDTIPRAYMADLAKEFEKGTVIGAYHTV 346
+ L L+ A ++++FV++ + I I Y +++A + +G G T
Sbjct: 279 SVIVLVLLVIA-DGYWTIMVISFVVFIGFDMIRPAITN-YFSNIAGD-RQGFAGGLNSTF 335
Query: 347 FGVFVFPASIIVGYLWQTYSLTVGFLYSAVMNVIAMIMMALLIKE 391
+ F +I G L+ + +Y A+ +A +++ L+ K+
Sbjct: 336 TSMGNFIGPLIAGALFDVH--IEAPIYMAIGVSLAGVVIVLIEKQ 378
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.143 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130182903
Number of Sequences: 2977
Number of extensions: 5290987
Number of successful extensions: 18700
Number of sequences better than 1.0e-10: 25
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 18617
Number of HSP's gapped (non-prelim): 33
length of query: 392
length of database: 189,106,746
effective HSP length: 55
effective length of query: 337
effective length of database: 156,189,961
effective search space: 52636016857
effective search space used: 52636016857
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)