BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0875 (PAB0875) DE:Hypothetical protein
         (454 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75042 hypothetical protein PAB0875 - Pyrococcus abyssi (st...   936  0.0

>pir||F75042 hypothetical protein PAB0875 - Pyrococcus abyssi (strain Orsay)
           >gi|5458748|emb|CAB50235.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 454
           
 Score =  936 bits (2392), Expect = 0.0
 Identities = 454/454 (100%), Positives = 454/454 (100%)

Query: 1   MFMVSNRLLIIVLSLIILSWGIISVLNCIVIMSENSITRILSYDVYRIEGSGDYIIYYPL 60
           MFMVSNRLLIIVLSLIILSWGIISVLNCIVIMSENSITRILSYDVYRIEGSGDYIIYYPL
Sbjct: 1   MFMVSNRLLIIVLSLIILSWGIISVLNCIVIMSENSITRILSYDVYRIEGSGDYIIYYPL 60

Query: 61  PNGSIKVLKKGKANSFFPVFVKVPREEWTRIPGKALYAPPTPLILYVTRDGKLGVKSITS 120
           PNGSIKVLKKGKANSFFPVFVKVPREEWTRIPGKALYAPPTPLILYVTRDGKLGVKSITS
Sbjct: 61  PNGSIKVLKKGKANSFFPVFVKVPREEWTRIPGKALYAPPTPLILYVTRDGKLGVKSITS 120

Query: 121 SRIKFDDGLDLKGNQIQIKSACPKGWIDFGGRYCLSPKWSLQFNAEAKVLDEWVSIMGMK 180
           SRIKFDDGLDLKGNQIQIKSACPKGWIDFGGRYCLSPKWSLQFNAEAKVLDEWVSIMGMK
Sbjct: 121 SRIKFDDGLDLKGNQIQIKSACPKGWIDFGGRYCLSPKWSLQFNAEAKVLDEWVSIMGMK 180

Query: 181 IENKTIERMDFDWDLVLSRSAYSYWMIGIDVGPFTIPFVSRKHLEGWVLSISYEPIGPLS 240
           IENKTIERMDFDWDLVLSRSAYSYWMIGIDVGPFTIPFVSRKHLEGWVLSISYEPIGPLS
Sbjct: 181 IENKTIERMDFDWDLVLSRSAYSYWMIGIDVGPFTIPFVSRKHLEGWVLSISYEPIGPLS 240

Query: 241 INNTWERYLSVRVEYLVIHSRVPAYDKLVGKRIWIEITQTYPIKIHSTGDYTIWESPARG 300
           INNTWERYLSVRVEYLVIHSRVPAYDKLVGKRIWIEITQTYPIKIHSTGDYTIWESPARG
Sbjct: 241 INNTWERYLSVRVEYLVIHSRVPAYDKLVGKRIWIEITQTYPIKIHSTGDYTIWESPARG 300

Query: 301 IYFTESKGDNPPRITTTPNIWSISKEVKWKRKLINSTGHWVGAILVKKHPANSFSLGSSL 360
           IYFTESKGDNPPRITTTPNIWSISKEVKWKRKLINSTGHWVGAILVKKHPANSFSLGSSL
Sbjct: 301 IYFTESKGDNPPRITTTPNIWSISKEVKWKRKLINSTGHWVGAILVKKHPANSFSLGSSL 360

Query: 361 SIPIDYGGFPSSLSLTAEFRKYMNAVSIILYSVDVKPRKSCYAMYSVLDVKVGESEPRVA 420
           SIPIDYGGFPSSLSLTAEFRKYMNAVSIILYSVDVKPRKSCYAMYSVLDVKVGESEPRVA
Sbjct: 361 SIPIDYGGFPSSLSLTAEFRKYMNAVSIILYSVDVKPRKSCYAMYSVLDVKVGESEPRVA 420

Query: 421 VPLVFSVITDDETLTPPCNSKTGLCITTTNPEQS 454
           VPLVFSVITDDETLTPPCNSKTGLCITTTNPEQS
Sbjct: 421 VPLVFSVITDDETLTPPCNSKTGLCITTTNPEQS 454


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.138    0.428 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184439139
Number of Sequences: 2977
Number of extensions: 8137359
Number of successful extensions: 22912
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22911
Number of HSP's gapped (non-prelim): 1
length of query: 454
length of database: 189,106,746
effective HSP length: 53
effective length of query: 401
effective length of database: 157,386,935
effective search space: 63112160935
effective search space used: 63112160935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)