BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0876 (PAB0876) DE:Hypothetical protein
         (389 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75042 hypothetical protein PAB0876 - Pyrococcus abyssi (st...   813  0.0
pir||F71118 hypothetical protein PH0717 - Pyrococcus horikoshii ...   506  e-142

>pir||G75042 hypothetical protein PAB0876 - Pyrococcus abyssi (strain Orsay)
           >gi|5458749|emb|CAB50236.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 389
           
 Score =  813 bits (2076), Expect = 0.0
 Identities = 389/389 (100%), Positives = 389/389 (100%)

Query: 1   MKKLGFTLLLLIIGLPIAKACFFPQDLYAVEVEIEGTYNLEPLLSAKNVLLEDGKIVYRS 60
           MKKLGFTLLLLIIGLPIAKACFFPQDLYAVEVEIEGTYNLEPLLSAKNVLLEDGKIVYRS
Sbjct: 1   MKKLGFTLLLLIIGLPIAKACFFPQDLYAVEVEIEGTYNLEPLLSAKNVLLEDGKIVYRS 60

Query: 61  HYDPRLIVMVWKDTTLHVRVQIPTSFGKRTIYTETFEGIIPIDDVFERAKERGWKVSGNS 120
           HYDPRLIVMVWKDTTLHVRVQIPTSFGKRTIYTETFEGIIPIDDVFERAKERGWKVSGNS
Sbjct: 61  HYDPRLIVMVWKDTTLHVRVQIPTSFGKRTIYTETFEGIIPIDDVFERAKERGWKVSGNS 120

Query: 121 IKKENIAIFITPKVGNECKADSDCKAQGCSGEACTPKNETVFSICIYREWYKCLNLTSCG 180
           IKKENIAIFITPKVGNECKADSDCKAQGCSGEACTPKNETVFSICIYREWYKCLNLTSCG
Sbjct: 121 IKKENIAIFITPKVGNECKADSDCKAQGCSGEACTPKNETVFSICIYREWYKCLNLTSCG 180

Query: 181 CYHGTCSWKPTEDFIRCLKKYNATLEDIIRARAIVTIEVYDELGDEIIKEINDTLGCNIP 240
           CYHGTCSWKPTEDFIRCLKKYNATLEDIIRARAIVTIEVYDELGDEIIKEINDTLGCNIP
Sbjct: 181 CYHGTCSWKPTEDFIRCLKKYNATLEDIIRARAIVTIEVYDELGDEIIKEINDTLGCNIP 240

Query: 241 TNFKKSESQGIIPDINPEDLNANLAIETELKWLRKIGVIDISEEDIKEISRIAKWGYAGH 300
           TNFKKSESQGIIPDINPEDLNANLAIETELKWLRKIGVIDISEEDIKEISRIAKWGYAGH
Sbjct: 241 TNFKKSESQGIIPDINPEDLNANLAIETELKWLRKIGVIDISEEDIKEISRIAKWGYAGH 300

Query: 301 NSRIGFYDGEWKPYFNYSNAELVRCVGSGFKDYKEELPMETPEVGKTCGPAILALLSLLA 360
           NSRIGFYDGEWKPYFNYSNAELVRCVGSGFKDYKEELPMETPEVGKTCGPAILALLSLLA
Sbjct: 301 NSRIGFYDGEWKPYFNYSNAELVRCVGSGFKDYKEELPMETPEVGKTCGPAILALLSLLA 360

Query: 361 LGGRKYEDSNDVLGGDSATSDKGKGGKNP 389
           LGGRKYEDSNDVLGGDSATSDKGKGGKNP
Sbjct: 361 LGGRKYEDSNDVLGGDSATSDKGKGGKNP 389


>pir||F71118 hypothetical protein PH0717 - Pyrococcus horikoshii
           >gi|3257125|dbj|BAA29808.1| (AP000003) 395aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 395
           
 Score =  506 bits (1288), Expect = e-142
 Identities = 231/390 (59%), Positives = 299/390 (76%), Gaps = 4/390 (1%)

Query: 1   MKKLGFTLLLLIIGLPIAKACFFPQDLYAVEVEIEGTYNLEPLLSAKNVLLEDGKIVYRS 60
           +KK    ++LL + +P A+ACFFPQDLYAVEVE++  YNL PLL A+N+++ED KI+YRS
Sbjct: 5   LKKAAILIILLFL-IPFARACFFPQDLYAVEVELKD-YNLNPLLKARNIVIEDHKIIYRS 62

Query: 61  HYDPRLIVMVWKDTTLHVRVQIPTSFGKRTIYTETFEGIIPIDDVFERAKERGWKVSGNS 120
           HYDPRLIVM+W D+ LHVRVQIPT   +  I+TE F G+IP   + ERAKE GW V    
Sbjct: 63  HYDPRLIVMIWNDSKLHVRVQIPTKSVEEKIFTEEFTGVIPAQTIVERAKESGWDVKEYY 122

Query: 121 IKKENIAIFITPKVGNECKADSDCKAQGCSGEACTPKNETVFSICIYREWYKCLNLTSCG 180
           +KK+NI I++TPKVG ECK+DSDCK  GCSGE C  KNET FS CIYREWY+CL LT CG
Sbjct: 123 LKKDNITIYLTPKVGKECKSDSDCKTGGCSGELCLKKNETAFSTCIYREWYECLKLTKCG 182

Query: 181 CYHGTCSWKPTEDFIRCLKKYNATLEDIIRARAIVTIEVYDELGDEIIKEINDTLGCNIP 240
           CY+G C+WKP   F+ CLKKYN ++E II+A+  + IE+  E+ D+II+EI   L C IP
Sbjct: 183 CYNGFCTWKPNPLFMECLKKYNVSIEKIIKAKTQIRIEIKGEINDKIIREIEYLLECKIP 242

Query: 241 TNFKKSESQGIIPDINPEDLNANLAIETELKWLRKIGVIDISEEDIKEISRIAKWGYAGH 300
            NF + +   I+P I+P  +NA  AIE+EL+WLR++GVI I +EDIK+IS IAKWGY+G+
Sbjct: 243 RNFNEIDKTSIVPTIDPRIVNAGTAIESELRWLREVGVIKIKDEDIKKISEIAKWGYSGY 302

Query: 301 NSRIGFYDGEWKPYFNYSNAELVRCVGSGFKDYKEELPMETPEVGK-TCGPAILALLSLL 359
           N+ IGFYDGEWKPYFN SNAEL+RCVG+GFKDY+EELP + P + + TCGPA++ LL+L+
Sbjct: 303 NAHIGFYDGEWKPYFNASNAELIRCVGNGFKDYQEELPKDPPTIERGTCGPAVMILLTLI 362

Query: 360 A-LGGRKYEDSNDVLGGDSATSDKGKGGKN 388
             LGG++ E+SNDVLG  + T +KGK  ++
Sbjct: 363 GILGGKRRENSNDVLGRGNLTRNKGKSSED 392


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.427 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160410980
Number of Sequences: 2977
Number of extensions: 7253079
Number of successful extensions: 16392
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16387
Number of HSP's gapped (non-prelim): 2
length of query: 389
length of database: 189,106,746
effective HSP length: 53
effective length of query: 336
effective length of database: 157,386,935
effective search space: 52882010160
effective search space used: 52882010160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)