BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0877 (PAB0877) DE:Hypothetical protein
(296 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75042 hypothetical protein PAB0877 - Pyrococcus abyssi (st... 584 e-166
pir||E71118 hypothetical protein PH0716 - Pyrococcus horikoshii ... 450 e-126
gb|AAK40790.1| Conserved hypothetical protein [Sulfolobus solfat... 136 4e-31
gb|AAK40404.1| Conserved hypothetical protein [Sulfolobus solfat... 104 2e-21
pir||A69215 conserved hypothetical protein MTH861 - Methanobacte... 97 3e-19
gb|AAG18844.1| (AE004988) Vng0247c [Halobacterium sp. NRC-1] 93 3e-18
sp|Q57688|Y236_METJA HYPOTHETICAL PROTEIN MJ0236 >gi|2128191|pir... 91 1e-17
pir||G72469 probable phosphomethylpyrimidine kinase APE2400 - Ae... 90 4e-17
pir||E71057 probable thiamin biosynthesis protein - Pyrococcus h... 89 5e-17
pir||C75087 hydroxymethylpyrimidine phosphate kinase (thid) PAB1... 87 2e-16
pir||G72333 conserved hypothetical protein - Thermotoga maritima... 84 2e-15
gb|AAK42540.1| Phosphomethylpyrimidine kinase (thiD-2) [Sulfolob... 78 9e-14
gb|AAF76451.1|AF077841_2 (AF077841) hydroxymethylpyrimidine-phos... 73 4e-12
>pir||H75042 hypothetical protein PAB0877 - Pyrococcus abyssi (strain Orsay)
>gi|5458750|emb|CAB50237.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 296
Score = 584 bits (1489), Expect = e-166
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MRTPTTFWAEIVLPAIRAKVARILSSEGFSQVRIAKELGITQAMVSKYLSKYKPPEILED 60
MRTPTTFWAEIVLPAIRAKVARILSSEGFSQVRIAKELGITQAMVSKYLSKYKPPEILED
Sbjct: 1 MRTPTTFWAEIVLPAIRAKVARILSSEGFSQVRIAKELGITQAMVSKYLSKYKPPEILED 60
Query: 61 IEGKIEAIAVSIAEMIKSDIEREEIIKTIERSFFKLLGDEKFCKAYEKYSGIPGKVCMEL 120
IEGKIEAIAVSIAEMIKSDIEREEIIKTIERSFFKLLGDEKFCKAYEKYSGIPGKVCMEL
Sbjct: 61 IEGKIEAIAVSIAEMIKSDIEREEIIKTIERSFFKLLGDEKFCKAYEKYSGIPGKVCMEL 120
Query: 121 AIESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNPRDTNDVAAIPGRITVI 180
AIESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNPRDTNDVAAIPGRITVI
Sbjct: 121 AIESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNPRDTNDVAAIPGRITVI 180
Query: 181 KGKPYAMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAYLPRE 240
KGKPYAMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAYLPRE
Sbjct: 181 KGKPYAMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAYLPRE 240
Query: 241 LSSIEEIEDRIAEMFNGNEFDVVIDPGRHGVEPCVYIFGRNPMDVIVKLKKIEENL 296
LSSIEEIEDRIAEMFNGNEFDVVIDPGRHGVEPCVYIFGRNPMDVIVKLKKIEENL
Sbjct: 241 LSSIEEIEDRIAEMFNGNEFDVVIDPGRHGVEPCVYIFGRNPMDVIVKLKKIEENL 296
>pir||E71118 hypothetical protein PH0716 - Pyrococcus horikoshii
>gi|3257124|dbj|BAA29807.1| (AP000003) 296aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 296
Score = 450 bits (1146), Expect = e-126
Identities = 215/296 (72%), Positives = 258/296 (86%)
Query: 1 MRTPTTFWAEIVLPAIRAKVARILSSEGFSQVRIAKELGITQAMVSKYLSKYKPPEILED 60
M+TPTTFWAE++LPAIRAKVA+ILSSEGFSQ++IAKELG+TQAMVSKYLSKY PPEIL
Sbjct: 1 MKTPTTFWAEVILPAIRAKVAKILSSEGFSQMKIAKELGVTQAMVSKYLSKYNPPEILNQ 60
Query: 61 IEGKIEAIAVSIAEMIKSDIEREEIIKTIERSFFKLLGDEKFCKAYEKYSGIPGKVCMEL 120
I +I+ +AV +AEMIK+D ++EEIIKTIERSF K L DEKFC+AYE YSGI GKVC ++
Sbjct: 61 IMEEIDTLAVLVAEMIKNDTKKEEIIKTIERSFLKFLSDEKFCRAYEMYSGISGKVCKDI 120
Query: 121 AIESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNPRDTNDVAAIPGRITVI 180
S +KEVI++L++ALEI+L+DEKFA LIPEIRSNFAYS+ NPRD NDVAA+PGRITVI
Sbjct: 121 ITSSERKEVIDELTKALEILLKDEKFARLIPEIRSNFAYSISNPRDLNDVAAVPGRITVI 180
Query: 181 KGKPYAMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAYLPRE 240
K KPYAMPPEFG SKHTA+LL+K+S++N IRSV+NIRFGKDVE+A+KKAGLRV YLPR
Sbjct: 181 KDKPYAMPPEFGASKHTAKLLIKISRYNPKIRSVINIRFGKDVEEAVKKAGLRVIYLPRN 240
Query: 241 LSSIEEIEDRIAEMFNGNEFDVVIDPGRHGVEPCVYIFGRNPMDVIVKLKKIEENL 296
L SIEE+E+ IA++F E D+VIDPGRHGVEPCVY+FG NP DVI KL+ +E+ L
Sbjct: 241 LKSIEEVENEIAKIFGMGEPDIVIDPGRHGVEPCVYVFGENPWDVIRKLRVVEKYL 296
>gb|AAK40790.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 314
Score = 136 bits (338), Expect = 4e-31
Identities = 99/299 (33%), Positives = 168/299 (56%), Gaps = 11/299 (3%)
Query: 1 MRTPTTFWAEIVLPAIRAKVARILSSEGFSQVRIAKELGITQAMVSKYLSKYKPPEI--L 58
+++P + + +I + +IR A+ L SQ RIA LG++Q V +YL + + I L
Sbjct: 10 LKSPLSIFDDIFITSIRVLEAKRLRELHMSQTRIANLLGVSQPAVKQYLDEDENSYIKRL 69
Query: 59 EDIEGKIEAIAVSIAEMIKSDI--EREEIIKTIERSFFKLLGDEKFCKAYEKYSGIPGKV 116
+++ E I + ++ + I + +++++ I F L KFCK ++ I ++
Sbjct: 70 QNLGLTREEIDDFLDKLTQLLINGDPKQVMQYISVFFLSNLSRLKFCKYHKM---IDSEI 126
Query: 117 CMELAI-ESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNPRDTNDVAAIPG 175
++ I +S KE E++ +L++E AELIPE+ SN A++ N + DV AIPG
Sbjct: 127 PVDCDICKSLYKENEEEMMELALSMLQNESVAELIPEVLSNLAFAKANAKREEDVLAIPG 186
Query: 176 RITVIKGKPY-AMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRV 234
RIT I+ P A P +G SKH A++L+ V K++ +RSV+NI++ + VE +K+ G +
Sbjct: 187 RITKIRNLPTPASKPMWGGSKHLAKVLLSVMKNHPAVRSVMNIKYDEKVEMILKEIGYKF 246
Query: 235 AYL-PRELSSIEEIEDRIAEMFNGNEFDVVIDPGRHGVEPCVYIFGRNPMDVIVKLKKI 292
+ P+ E I + IA +F+ DVVI G G+E Y+FGR+P+DV+ K+ I
Sbjct: 247 KKVGPQNDLGNERIAETIAAVFDEGT-DVVIHLGGTGIEANTYVFGRDPLDVVKKIINI 304
>gb|AAK40404.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 190
Score = 104 bits (256), Expect = 2e-21
Identities = 62/188 (32%), Positives = 110/188 (57%), Gaps = 16/188 (8%)
Query: 123 ESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNPRDTNDVAAIPGRI-TVIK 181
ES ++ V++ L A++I + +E+ LIPE+R+N Y++ N D NDVAAIPGR+ T K
Sbjct: 4 ESEREYVLKRLKEAVDIFVSNERAYLLIPEVRTNIGYAVSNAADANDVAAIPGRLTTAFK 63
Query: 182 GKPYAMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRV---AYLP 238
Y M P FG S H AR+++ V KH+++IRS +N+++ ++V + + L + + P
Sbjct: 64 KVIYCMLPAFGASDHVARVILTVMKHDRNIRSAINLKYYREVIEKLPSQDLCIFDRSSEP 123
Query: 239 RELSSIEE------IEDRIAEMFNGNEFDVVIDPGRHGVEPCVYIFGRNPMDVIVK---- 288
+E+ E ++ I ++ + ++D G +G EP ++I R+P+ V+ K
Sbjct: 124 KEVKYREHSTMNFMVDSCIRKLSKVPNY--IVDLGDYGKEPSLFILDRDPVTVVNKSLEL 181
Query: 289 LKKIEENL 296
LK I +++
Sbjct: 182 LKYISQDI 189
>pir||A69215 conserved hypothetical protein MTH861 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621953|gb|AAB85359.1| (AE000862) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 190
Score = 96.7 bits (237), Expect = 3e-19
Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 130 IEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNPRDTNDVAAIPGRITVIKGKPYA-MP 188
IE++ RALE+I E F LIPE+RSN + NP DV A+PGRIT +G+ +A
Sbjct: 6 IENVRRALEMISSAEDFGILIPEVRSNIVMARSNPCGPEDVVAVPGRITEFQGRAFACRD 65
Query: 189 PEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAYL--PRELSSIEE 246
PE+G S H AR ++ +++H RS LNI+F + + + GL V+ RE S+ +
Sbjct: 66 PEYGASSHMARFIIALNEHLPGRRSALNIKFDESIISICEDMGLVVSSYDRSREPDSVRD 125
Query: 247 IED-----RIAEMFNGNEF--DVVIDPGRHGVEPCVYIFGRNPMDV 285
E + E +E DV+ G G EP + + GR+ ++V
Sbjct: 126 TEGGSIPWGVEEALRNSESPPDVIYHRGAWGKEPMIVLTGRDAVEV 171
>gb|AAG18844.1| (AE004988) Vng0247c [Halobacterium sp. NRC-1]
Length = 302
Score = 93.2 bits (228), Expect = 3e-18
Identities = 75/288 (26%), Positives = 123/288 (42%), Gaps = 13/288 (4%)
Query: 10 EIVLPAIRAKVARILSSEGFSQVRIAKELGITQAMVSKYL--SKYKPPEILED------I 61
E LP R+ +A L G +Q +A+ LG++Q+ VSKY EI D +
Sbjct: 10 EEFLPTFRSLLAADLRERGLTQHEVAELLGVSQSAVSKYAHGDVTTDDEIAADDRVQELV 69
Query: 62 EGKIEAIAVSIAEMIKSDIEREEIIKTIERSFFKLLGDEKFCKAYEKYSGIPGKVCMELA 121
E +A +++ +E E +++ + S L E+ A + G + A
Sbjct: 70 ERTGSGLATGNVSQVQALVEAEVLVRELSTSSDILA--ERHEAANPALADYDGDFTVHDA 127
Query: 122 IESGK--KEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNPRDTNDVAAIPGRITV 179
+ + V+ + R + ++ R FA IP + +N P DVA +PGR+
Sbjct: 128 DSEVRVREHVLSSVRRGVRMLERTSGFATQIPAVGANLVECTPEADTVEDVAGVPGRVLD 187
Query: 180 IKGKP-YAMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAYLP 238
+ G+ PEFGVS + A +L+ D + LNI + D A+ AG V
Sbjct: 188 VMGRTEIPAEPEFGVSAYVATVLLDARAAGVDAHAALNIAYSADTVAALADAGYAVVEFE 247
Query: 239 RELSSIEEIEDRIAEMFNGNEFDVVIDPGRHGVEPCVYIFGRNPMDVI 286
E S + + + + DV+ G +GVEP VY+ N D +
Sbjct: 248 PEGESTTDDHHIRDAVRDADAVDVLYQTGGYGVEPIVYVLAENAPDAV 295
>sp|Q57688|Y236_METJA HYPOTHETICAL PROTEIN MJ0236 >gi|2128191|pir||E64329 hypothetical
protein MJ0236 - Methanococcus jannaschii
>gi|1590970|gb|AAB98222.1| (U67479) conserved
hypothetical [Methanococcus jannaschii]
Length = 421
Score = 91.3 bits (223), Expect = 1e-17
Identities = 75/254 (29%), Positives = 129/254 (50%), Gaps = 19/254 (7%)
Query: 47 KYLSKYKPPEILEDIEGKIEAIAVSIAEMIKSDIEREEIIKTIERSFFKLLGDEKFCKAY 106
K + +K + +++ G + +I + + EE IK +R + K K+
Sbjct: 175 KPIKTFKGFRVDKEVHGTGCVYSTAITAFLSKGYDLEEAIKEAKRFVLSSVIYAK--KSK 232
Query: 107 EKYSGIPGKVCMELAIESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNPRD 166
Y+ P + K++VI++LS A+ +L+ F LIPE+ SN A SLP P+D
Sbjct: 233 FGYNSNPTYI--------NKEKVIKNLSYAI-YLLKKMNFT-LIPEVGSNIAESLPFPKD 282
Query: 167 TNDVAAIPGRITVIK-GKPYAMPP-EFGVSKHTARLLVKVSKHNKDIRSVLNIRFG---- 220
DVAA+ GRI K G Y + EFG S+H A++++ SK N +IR+ +NI++
Sbjct: 283 FKDVAALTGRIIKNKLGGFYIVGDIEFGASEHIAKIILSASKFNPEIRACMNIKYDGGLI 342
Query: 221 KDVEDAIKKAGLRVAYLPRELSSIEEIEDRIAEMFNGNEFDVVIDPGRHGVEPCVYIFGR 280
K ++D + P +S++E E F G D++ D G G EP + + GR
Sbjct: 343 KLLKDKFAVSSFDRKEEPPNVSTMEWGTKIACEKFGGVP-DIIYDRGGEGKEPMIRVLGR 401
Query: 281 NPMDVIVKLKKIEE 294
+ ++V+ K++ I++
Sbjct: 402 DAIEVVKKVEVIQK 415
>pir||G72469 probable phosphomethylpyrimidine kinase APE2400 - Aeropyrum pernix
(strain K1) >gi|5106104|dbj|BAA81415.1| (AP000064) 464aa
long hypothetical phosphomethylpyrimidine kinase
[Aeropyrum pernix]
Length = 464
Score = 89.7 bits (219), Expect = 4e-17
Identities = 66/179 (36%), Positives = 93/179 (51%), Gaps = 15/179 (8%)
Query: 121 AIESGKKEVIEDLSRALEIILRDEKFAE-LIPEIRSNFAYSLPNP--RDTNDVAAIPGRI 177
AI +G+ EV+E+L +A E + + E L+PE+ N A ++P P R DVAA PGRI
Sbjct: 273 AIPAGRWEVLENLEKAGETLRQAEDVVHTLVPEVLMNIAMAIPYPYARTPLDVAAFPGRI 332
Query: 178 TVIKGK-PYAMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAY 236
V G+ + PEFG S+H ARL++ N DIR+ NI++ KDV A + GL + Y
Sbjct: 333 GVHMGRLVFKGKPEFGASRHMARLVLAAMSVNPDIRAAGNIKYSKDVVRAAEDLGL-LTY 391
Query: 237 LPRELSSIEEIED----------RIAEMFNGNEFDVVIDPGRHGVEPCVYIFGRNPMDV 285
+ +++ R A G DV+ D G G EP V I GR +DV
Sbjct: 392 RGDRRAEPPDVKAREGGTLPWMLRSAYESLGRLPDVIYDEGEVGKEPMVRILGRTAVDV 450
>pir||E71057 probable thiamin biosynthesis protein - Pyrococcus horikoshii
>gi|3257572|dbj|BAA30255.1| (AP000005) 446aa long
hypothetical thiamine biosynthesis protein [Pyrococcus
horikoshii]
Length = 446
Score = 89.3 bits (218), Expect = 5e-17
Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 120 LAIESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNP--RDTNDVAAIPGRI 177
+ I + K + E+L+RA+ R +LIPE+ +NF Y+LP P R DVA + GRI
Sbjct: 262 IEIPAEKWRIYEELTRAVREFERINPI-KLIPEVGTNFVYALPFPYARTKEDVAGVKGRI 320
Query: 178 TVIKGKPYAMPP-EFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAY 236
+ + A+ EFG S H AR ++ + RS +N+R+ +++ + K+ G V++
Sbjct: 321 VRVGNEVRAVGSVEFGASDHLARAILTFMRFYPKYRSAINVRYSEEIVELAKEQGFTVSF 380
Query: 237 LPRELSSIEEIEDRIAEMFNGNEF---------DVVIDPGRHGVEPCVYIFGRNPMDVIV 287
R IE E A + G E DV+ G G EP + IFGRNP +V+
Sbjct: 381 YDRREEPIEVKEKEGATIPWGIEVAVKRINKRPDVIYHLGDIGKEPMILIFGRNPREVLD 440
Query: 288 KLK 290
KL+
Sbjct: 441 KLR 443
>pir||C75087 hydroxymethylpyrimidine phosphate kinase (thid) PAB1646 -
Pyrococcus abyssi (strain Orsay)
>gi|5458512|emb|CAB50000.1| (AJ248286)
hydroxymethylpyrimidine phosphate kinase (thiD)
[Pyrococcus abyssi]
Length = 446
Score = 87.0 bits (212), Expect = 2e-16
Identities = 64/184 (34%), Positives = 98/184 (52%), Gaps = 15/184 (8%)
Query: 120 LAIESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNP--RDTNDVAAIPGRI 177
+ I + K + E+L+RA+ + + IPE+ +NF YSLP P R +DVA + GRI
Sbjct: 262 IEIPAEKWRIYEELTRAVREF-EEMNPVKFIPEVGTNFVYSLPLPYARTRDDVAGVKGRI 320
Query: 178 TVIKGKPYAMPP-EFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAY 236
+ + A+ P EFG S H AR ++ K + RS +NIR+ ++ ++ GL V++
Sbjct: 321 VRVGNEVRAVGPVEFGASDHLARAVLTFMKFYPEYRSAINIRYSEETVRLAEEQGLVVSF 380
Query: 237 LPRELSSIEEIEDRI-AEMFNGNEF---------DVVIDPGRHGVEPCVYIFGRNPMDVI 286
R EEI++R A + G E DV+ G G EP + IFGRNP +V+
Sbjct: 381 YDRR-EEPEEIKEREGATIPWGIESAIKRVKQRPDVIYHLGDVGKEPMILIFGRNPREVL 439
Query: 287 VKLK 290
KL+
Sbjct: 440 DKLR 443
>pir||G72333 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981319|gb|AAD35872.1|AE001747_15 (AE001747)
conserved hypothetical protein [Thermotoga maritima]
Length = 398
Score = 83.9 bits (204), Expect = 2e-15
Identities = 64/220 (29%), Positives = 108/220 (49%), Gaps = 41/220 (18%)
Query: 110 SGIPGKVCMELAIESGKKEVIEDLSRALEI---------ILRD--------------EKF 146
S + G + M +E + +E L + LE +LRD +F
Sbjct: 176 SAVSGFLAMSYPVEEAIRSAMELLKKILERSSGVVETEKLLRDWYRYDTLNTLDEILPEF 235
Query: 147 AEL----IPEIRSNFAYSLPNPRDTNDVAAIPGRITVIKGKPYAMP-PEFGVSKHTARLL 201
E+ +PE+ N +Y+LP ++ +V PGRI + +GK A+ F HTAR+
Sbjct: 236 LEIGHLTVPEVGQNVSYALPWAKNEFEVGKFPGRIRLKEGKAVAVSCASFKDRSHTARMA 295
Query: 202 VKVSKHNKDIRSVLNIRFGKDVEDAIKKAGLRVAYL-----PREL------SSIEEIEDR 250
V + +++ +R V+N+R+ ++ + KK GL+V + P+E+ S + IE
Sbjct: 296 VTMMRYHPHMRCVVNVRYEREYVERAKKRGLKVFHYDRSKEPKEVQEKEGQSMVWMIEQA 355
Query: 251 IAEMFNGNEFDVVIDPGRHGVEPCVYIFGRNPMDVIVKLK 290
IAE+ + DV+ D G G E + +FGRNP +V+ K+K
Sbjct: 356 IAEL--KSPPDVIYDEGWWGKEAMIRVFGRNPKEVLEKIK 393
>gb|AAK42540.1| Phosphomethylpyrimidine kinase (thiD-2) [Sulfolobus solfataricus]
Length = 456
Score = 78.4 bits (190), Expect = 9e-14
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 113 PGKVCMELAIESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNP--RDTNDV 170
P V +E+ +S K E +E++ R + +++F LIPE++SN A+S+ RD ND+
Sbjct: 263 PVNVSVEIMKKSMKYEAVEEMRRFADFAENNDRFWILIPEVQSNLAHSIKPEYVRDLNDI 322
Query: 171 AAIPGRIT------VIKGKPYAMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVE 224
A GRI VI G P FG HTAR+L+ + KD ++NIR+ +
Sbjct: 323 ATFRGRIIRRWDKKVIVGHPVV----FGNPTHTARMLLSLILKGKDSTCLMNIRYDDKIV 378
Query: 225 DAIKKAGLRVAYLPREL-------SSIEEIEDRIAEMFNGNEFDVVIDPGRHGVEPCVYI 277
++ K+ G + REL +++ I + ++ + G +V+ D G G E +
Sbjct: 379 ESFKRIGYETIEINRELEPAHGEGKTMQWIIEYVSSEYGGIP-NVIYDKGTKGKEAMIRF 437
Query: 278 FGRNPMDVIVKLKKI 292
+ +N ++I L +
Sbjct: 438 WTKNMEEMIEALDNL 452
>gb|AAF76451.1|AF077841_2 (AF077841) hydroxymethylpyrimidine-phosphate kinase [Sulfolobus
solfataricus]
Length = 399
Score = 73.0 bits (176), Expect = 4e-12
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 113 PGKVCMELAIESGKKEVIEDLSRALEIILRDEKFAELIPEIRSNFAYSLPNP--RDTNDV 170
P V +E+ +S K E +E++ R + +++F LIPE++SN A+S+ RD ND+
Sbjct: 251 PVNVSVEIMKKSMKYEAVEEMRRFADFAENNDRFWILIPEVQSNLAHSIKPEYVRDLNDI 310
Query: 171 AAIPGRIT------VIKGKPYAMPPEFGVSKHTARLLVKVSKHNKDIRSVLNIRFGKDVE 224
A GRI VI G P FG HTAR+L+ + KD ++NIR+ +
Sbjct: 311 ATFRGRIIRRWDKKVIVGHPVV----FGNPTHTARMLLSLILKGKDSTCLMNIRYDDKIV 366
Query: 225 DAIKKAGLRVAYLPRELS 242
++ K+ G + REL+
Sbjct: 367 ESFKRIGYETIEINRELN 384
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106584674
Number of Sequences: 2977
Number of extensions: 4323586
Number of successful extensions: 13129
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 13097
Number of HSP's gapped (non-prelim): 13
length of query: 296
length of database: 189,106,746
effective HSP length: 58
effective length of query: 238
effective length of database: 154,394,500
effective search space: 36745891000
effective search space used: 36745891000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)