BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0878 (PAB0878) DE:Hypothetical protein
(137 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75043 hypothetical protein PAB0878 - Pyrococcus abyssi (st... 273 8e-73
pir||B71118 hypothetical protein PH0713 - Pyrococcus horikoshii ... 231 2e-60
gb|AAK42662.1| Conserved hypothetical protein [Sulfolobus solfat... 138 2e-32
pir||A71173 hypothetical protein PH0581 - Pyrococcus horikoshii ... 136 1e-31
pir||G75053 hypothetical protein PAB0941 - Pyrococcus abyssi (st... 134 6e-31
gi|11498347 conserved hypothetical protein [Archaeoglobus fulgid... 119 2e-26
gi|11499632 conserved hypothetical protein [Archaeoglobus fulgid... 116 1e-25
sp|O26865|Y771_METTH HYPOTHETICAL PROTEIN MTH771 >gi|7444974|pir... 115 2e-25
pir||A72633 hypothetical protein APE1520 - Aeropyrum pernix (str... 100 7e-21
pir||H70472 conserved hypothetical protein aq_2013 - Aquifex aeo... 99 2e-20
pir||C72200 conserved hypothetical protein - Thermotoga maritima... 97 1e-19
pir||E70468 conserved hypothetical protein aq_1965 - Aquifex aeo... 86 2e-16
pir||A72342 conserved hypothetical protein - Thermotoga maritima... 84 6e-16
sp|Q58481|YA81_METJA HYPOTHETICAL PROTEIN MJ1081 >gi|2128043|pir... 82 4e-15
sp|O05243|YUGU_BACSU HYPOTHETICAL 16.3 KD PROTEIN IN TGL-PGI INT... 80 1e-14
sp|P74125|YI80_SYNY3 HYPOTHETICAL 16.4 KD PROTEIN SLL1880 >gi|74... 70 1e-11
gb|AAF67497.1|AF170880_4 (AF170880) NovD [Streptomyces spheroides] 69 2e-11
>pir||A75043 hypothetical protein PAB0878 - Pyrococcus abyssi (strain Orsay)
>gi|5458751|emb|CAB50238.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 137
Score = 273 bits (690), Expect = 8e-73
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MVVISKELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLL 60
MVVISKELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLL
Sbjct: 1 MVVISKELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLL 60
Query: 61 EDFKRFLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVE 120
EDFKRFLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVE
Sbjct: 61 EDFKRFLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVE 120
Query: 121 LDTRPRSRRVILQIVGE 137
LDTRPRSRRVILQIVGE
Sbjct: 121 LDTRPRSRRVILQIVGE 137
>pir||B71118 hypothetical protein PH0713 - Pyrococcus horikoshii
>gi|3257121|dbj|BAA29804.1| (AP000003) 157aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 157
Score = 231 bits (584), Expect = 2e-60
Identities = 107/137 (78%), Positives = 122/137 (88%)
Query: 1 MVVISKELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLL 60
M V+ KEL FSTKGEIDLVDITREVE FV ES + G VL+FVPGATGA+VAIEHEEGLL
Sbjct: 21 MKVVKKELHFSTKGEIDLVDITREVELFVAESGISKGQVLIFVPGATGAVVAIEHEEGLL 80
Query: 61 EDFKRFLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVE 120
EDFK+ L+E++P+E+ YLHNRFDDNAHSH+RATLLGPSL FPI+DG LVRGTWQQIFFVE
Sbjct: 81 EDFKKILKEIVPKEKPYLHNRFDDNAHSHIRATLLGPSLVFPIVDGELVRGTWQQIFFVE 140
Query: 121 LDTRPRSRRVILQIVGE 137
LDTRPR RR++LQ +GE
Sbjct: 141 LDTRPRKRRILLQAIGE 157
>gb|AAK42662.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 137
Score = 138 bits (345), Expect = 2e-32
Identities = 69/137 (50%), Positives = 91/137 (66%)
Query: 1 MVVISKELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLL 60
M V ++ ST + +LVDIT +VE+ VE+S +KNGI L+FV +T AIVA EHE GL+
Sbjct: 1 MKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLM 60
Query: 61 EDFKRFLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVE 120
ED ++E RS+ HN DDNAH+HL AT LG FP+ +G+LVRGTWQ IF VE
Sbjct: 61 EDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVE 120
Query: 121 LDTRPRSRRVILQIVGE 137
LD R + ++I+GE
Sbjct: 121 LDGPRSERHITVEILGE 137
>pir||A71173 hypothetical protein PH0581 - Pyrococcus horikoshii
>gi|3256987|dbj|BAA29670.1| (AP000002) 133aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 133
Score = 136 bits (338), Expect = 1e-31
Identities = 65/129 (50%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Query: 6 KELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLLEDFKR 65
K + T E +++DIT+EVE+ V ESNVK+GIV+VF T A+ E+E GL D +
Sbjct: 3 KSITIRTSREFEIIDITKEVERVVRESNVKSGIVVVFTRHTTTALTINENESGLKRDIEE 62
Query: 66 FLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTRP 125
L +++P+ +Y H+R D+NAHSHLR LLGPSL P+ DGRL+ GTWQ I FVELD P
Sbjct: 63 ILSKLVPKGMNYFHDRIDNNAHSHLRGILLGPSLTIPVEDGRLLLGTWQSILFVELD-GP 121
Query: 126 RSRRVILQI 134
R+R V +++
Sbjct: 122 RTREVYVKV 130
>pir||G75053 hypothetical protein PAB0941 - Pyrococcus abyssi (strain Orsay)
>gi|5458837|emb|CAB50324.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 133
Score = 134 bits (333), Expect = 6e-31
Identities = 63/129 (48%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Query: 6 KELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLLEDFKR 65
+ ++ T E ++VDIT EVEK V ESNVK+G+V+VF T A+ E+E GL D +
Sbjct: 3 RSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEE 62
Query: 66 FLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTRP 125
L +++P+ Y+H+R D+NAHSHLR L+GPSL P+ DGRL+ GTWQ I F+ELD P
Sbjct: 63 LLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELD-GP 121
Query: 126 RSRRVILQI 134
R+R V +++
Sbjct: 122 RTREVYVKV 130
>gi|11498347 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7444977|pir||E69342 conserved hypothetical protein
AF0741 - Archaeoglobus fulgidus
>gi|2649874|gb|AAB90501.1| (AE001054) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 123
Score = 119 bits (295), Expect = 2e-26
Identities = 57/120 (47%), Positives = 83/120 (68%), Gaps = 2/120 (1%)
Query: 18 LVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLLEDFKRFLREVIPRERSY 77
+ DIT EVEKFV+ES+V++G VLVF G+TGA+ IE+E GL +D R + ++ P SY
Sbjct: 1 MADITPEVEKFVKESSVESGAVLVFSVGSTGAVTTIEYEPGLKKDLPRIMEKIAPYGDSY 60
Query: 78 LHNRF--DDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTRPRSRRVILQIV 135
H++ DDN H++A+++GPS+ P + + + GTWQQ+ + DTR R RRVILQI+
Sbjct: 61 EHHKTWGDDNGSGHVKASIIGPSVLIPFHNSKPILGTWQQVVIINFDTRRRRRRVILQIL 120
>gi|11499632 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3123134|sp|O28229|YK50_ARCFU HYPOTHETICAL PROTEIN
AF2050 >gi|7444975|pir||A69506 conserved hypothetical
protein AF2050 - Archaeoglobus fulgidus
>gi|2648491|gb|AAB89204.1| (AE000961) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 126
Score = 116 bits (288), Expect = 1e-25
Identities = 58/127 (45%), Positives = 85/127 (66%), Gaps = 4/127 (3%)
Query: 7 ELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLLEDFKRF 66
EL T ++++DIT +VE+ VE ++G+VLV+ P T A+V E E GLLED F
Sbjct: 2 ELTLKTAKRVEIIDITDQVERCVES---RDGLVLVYTPHTTTALVINEGERGLLEDILEF 58
Query: 67 LREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTRPR 126
+ +++P + Y H+R D NA +HL+ATLLG S+ P+ G+L GTWQ+I F+E D PR
Sbjct: 59 MEKLVPYGKGYKHDRLDSNADAHLKATLLGNSVVVPVESGKLALGTWQRILFLEFD-GPR 117
Query: 127 SRRVILQ 133
+RRVI++
Sbjct: 118 TRRVIVK 124
>sp|O26865|Y771_METTH HYPOTHETICAL PROTEIN MTH771 >gi|7444974|pir||B69203 conserved
hypothetical protein MTH771 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621861|gb|AAB85274.1| (AE000855) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 143
Score = 115 bits (286), Expect = 2e-25
Identities = 61/137 (44%), Positives = 84/137 (60%), Gaps = 1/137 (0%)
Query: 1 MVVISKELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLL 60
M V ++EL T ++L+DIT V +E S ++NGI+ VF +T AI E+E LL
Sbjct: 7 MEVYTQELPLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINENESRLL 66
Query: 61 EDFKRFLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVE 120
D + L +P + SY HN D+NA SHLRA LLG S P+I+G + GTWQ IFF E
Sbjct: 67 SDIESMLEGTVPVDASYGHNAIDNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSIFFAE 126
Query: 121 LDTRPRSRRVILQIVGE 137
LD PR+RR+ + + G+
Sbjct: 127 LD-GPRNRRIRVSVAGK 142
>pir||A72633 hypothetical protein APE1520 - Aeropyrum pernix (strain K1)
>gi|5105205|dbj|BAA80519.1| (AP000061) 134aa long
hypothetical protein [Aeropyrum pernix]
Length = 134
Score = 100 bits (247), Expect = 7e-21
Identities = 51/126 (40%), Positives = 77/126 (60%), Gaps = 1/126 (0%)
Query: 12 TKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLLEDFKRFLREVI 71
T+ + ++D+T +VE+++ NG+++V+VP T A+ E E L+ED F+RE+
Sbjct: 10 TERRLQVLDVTGKVEEWLSTVGGVNGLLVVYVPHTTAAVAVNEAEPRLMEDIVEFIRELT 69
Query: 72 PRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTRPRSRRVI 131
+ HN D NAH+HL T++G S P++ GRL GTWQ+I FVE+D PR R V
Sbjct: 70 KPGGPWKHNLVDVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMD-GPRERTVN 128
Query: 132 LQIVGE 137
L +GE
Sbjct: 129 LLYLGE 134
>pir||H70472 conserved hypothetical protein aq_2013 - Aquifex aeolicus
>gi|2984260|gb|AAC07787.1| (AE000768) hypothetical
protein [Aquifex aeolicus]
Length = 137
Score = 99.5 bits (244), Expect = 2e-20
Identities = 55/138 (39%), Positives = 83/138 (59%), Gaps = 2/138 (1%)
Query: 1 MVVISKELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLL 60
M +K L F+TK +L+ IT EV+K VEES VK G+ LV T +++ + EEGL
Sbjct: 1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEESEVKEGLCLVSSMHLTSSVIIQDDEEGLH 60
Query: 61 EDFKRFLREVIPRERSYLHNRF-DDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFV 119
ED +L ++ P Y H+R +DN +HL+ L + PI +G+L G WQ+IF+
Sbjct: 61 EDIWEWLEKLAPYRPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYA 120
Query: 120 ELDTRPRSRRVILQIVGE 137
E D + R +RV+++I+GE
Sbjct: 121 EFDGQ-RPKRVVIKIIGE 137
>pir||C72200 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982458|gb|AAD36934.1|AE001824_3 (AE001824)
conserved hypothetical protein [Thermotoga maritima]
Length = 132
Score = 96.7 bits (237), Expect = 1e-19
Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 6 KELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEH-EEGLLEDFK 64
K L T VDIT E+ KF+EES V+NGI +VFVP T I E+ + + +D
Sbjct: 3 KRLTVRTSSRTQFVDITSEIVKFIEESKVRNGICVVFVPHTTAGITINENADPSVRQDIM 62
Query: 65 RFLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTR 124
L +++P Y H + NA SH++A+L+G S+ I +GR + GTWQ I+F E D
Sbjct: 63 NTLNKLVPPSAGYTH--LEGNADSHIKASLVGSSVTLIIENGRPLLGTWQGIYFCEFD-G 119
Query: 125 PRSRRVILQIV 135
PR+R V ++IV
Sbjct: 120 PRTRSVYVKIV 130
>pir||E70468 conserved hypothetical protein aq_1965 - Aquifex aeolicus
>gi|2984214|gb|AAC07744.1| (AE000765) hypothetical
protein [Aquifex aeolicus]
Length = 134
Score = 85.8 bits (209), Expect = 2e-16
Identities = 47/132 (35%), Positives = 78/132 (58%), Gaps = 5/132 (3%)
Query: 8 LRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEE-GLLEDFKRF 66
LR T +V+IT++V++ V++S V+ GI +V+ P T + E + ++ D
Sbjct: 5 LRVRTTKHTSIVNITQQVDQVVKKSGVREGICVVYTPHTTACVFVNEGADPDVVRDIVYS 64
Query: 67 LREVIP-RERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTRP 125
L ++IP + SY H + N+ +H+R+ ++G S PIIDG L GTW+ IF + D P
Sbjct: 65 LEKLIPWNDPSYAH--MEGNSAAHIRSAIIGNSRVIPIIDGELALGTWESIFLADFD-GP 121
Query: 126 RSRRVILQIVGE 137
R R+VI+ ++GE
Sbjct: 122 RERKVIVVVLGE 133
>pir||A72342 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981248|gb|AAD35805.1|AE001743_7 (AE001743)
conserved hypothetical protein [Thermotoga maritima]
Length = 139
Score = 84.3 bits (205), Expect = 6e-16
Identities = 47/135 (34%), Positives = 79/135 (57%), Gaps = 4/135 (2%)
Query: 6 KELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLLEDFKR 65
KEL F TK + ++IT +E+ V ES +K G++L T ++ + E GL DF+
Sbjct: 6 KELWFHTKRRREFINITPLLEECVRESGIKEGLLLCNAMHITASVFINDDEPGLHHDFEV 65
Query: 66 FLREVIPRE--RSYLHN-RFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELD 122
+L ++ P + Y HN +DNA +HL+ T++G + I D ++ G W+Q+F+ E D
Sbjct: 66 WLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFD 125
Query: 123 TRPRSRRVILQIVGE 137
R +RV+++I+GE
Sbjct: 126 GM-RPKRVLVKIIGE 139
>sp|Q58481|YA81_METJA HYPOTHETICAL PROTEIN MJ1081 >gi|2128043|pir||H64434 hypothetical
protein homolog MJ1081 - Methanococcus jannaschii
>gi|1591729|gb|AAB99083.1| (U67551) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 138
Score = 81.5 bits (198), Expect = 4e-15
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 6/140 (4%)
Query: 1 MVVISKELRFS--TKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEE- 57
M+VI ++ T +LVDIT + + ES VK+GI +++VP T I E+ +
Sbjct: 1 MLVIKMLFKYQIKTNKREELVDITPYIISAISESKVKDGIAVIYVPHTTAGITINENADP 60
Query: 58 GLLEDFKRFLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIF 117
+ D FL +IP+ ++ H + N+ +H++++L+G S I DG+ + GTWQ IF
Sbjct: 61 SVKHDIINFLSHLIPKNWNFTH--LEGNSDAHIKSSLVGCSQTIIIKDGKPLLGTWQGIF 118
Query: 118 FVELDTRPRSRRVILQIVGE 137
F E D PR R ++I+G+
Sbjct: 119 FAEFD-GPRRREFYVKIIGD 137
>sp|O05243|YUGU_BACSU HYPOTHETICAL 16.3 KD PROTEIN IN TGL-PGI INTERGENIC REGION
>gi|7444973|pir||A70012 conserved hypothetical protein
yugU - Bacillus subtilis >gi|1934798|emb|CAB07927.1|
(Z93935) unknown [Bacillus subtilis]
>gi|2635612|emb|CAB15106.1| (Z99119) similar to
hypothetical proteins [Bacillus subtilis]
>gi|2635624|emb|CAB15117.1| (Z99120) similar to
hypothetical proteins [Bacillus subtilis]
Length = 142
Score = 80.0 bits (194), Expect = 1e-14
Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Query: 6 KELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEH-EEGLLEDFK 64
K L+ T +++DITREVE F++E+ + +G L++ P T I E+ + + +D
Sbjct: 13 KTLQIKTTKRDEMIDITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDML 72
Query: 65 RFLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTR 124
R EV P E L + N +H++++ +G S + +GRL+ GTWQ I+F E D
Sbjct: 73 RRFDEVYPWEHE-LDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEFD-G 130
Query: 125 PRSRRVILQIVG 136
PR+R ++++G
Sbjct: 131 PRTRTCYIKMMG 142
>sp|P74125|YI80_SYNY3 HYPOTHETICAL 16.4 KD PROTEIN SLL1880 >gi|7429304|pir||S75650
hypothetical protein sll1880 - Synechocystis sp. (strain
PCC 6803) >gi|1653296|dbj|BAA18211.1| (D90912)
hypothetical protein [Synechocystis sp.]
Length = 147
Score = 69.9 bits (168), Expect = 1e-11
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Query: 8 LRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEE-GLLEDFKRF 66
L +T+G+ L + +++ V+ S VK G+ VFV + +++ E+ + +L D F
Sbjct: 15 LVIATQGK-SLHNFNSKIQAVVQHSGVKTGLCTVFVRHTSASLIIQENADPDVLTDLAIF 73
Query: 67 LREVIPRE-RSYLHNRFD-DNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTR 124
+++P + R Y H+ D+ +H+R+ L S PI++GRL GTWQ +F E R
Sbjct: 74 FAQLVPEDGRRYRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLGTWQGVFLWEHRQR 133
Query: 125 PRSRRVILQIVGE 137
P R VI+ + GE
Sbjct: 134 PHQREVIVHVSGE 146
>gb|AAF67497.1|AF170880_4 (AF170880) NovD [Streptomyces spheroides]
Length = 143
Score = 69.1 bits (166), Expect = 2e-11
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 18 LVDITREVEKFVEESNV-KNGIVLVFVPGATGAIVAIEHEEGLLEDFKRFLREVIPRERS 76
+ D+TR E+F+ ES ++G++ +FVP AT + IE G +D LR ++P +
Sbjct: 23 VTDLTRVCEQFLHESAAGRDGLLNIFVPHATAGVAVIETGAGSDDDLLAALRTLLPADNR 82
Query: 77 YLHNRFDD-NAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTRPRSRRVILQIV 135
+ H + H+ L+ P P+I GRL GTWQ + V+ +T R V L +
Sbjct: 83 WRHRHGSPGHGRDHVLPALVPPHATLPVIAGRLELGTWQSVCLVDTNTDNPDRYVRLSFL 142
Query: 136 G 136
G
Sbjct: 143 G 143
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.143 0.408
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48560274
Number of Sequences: 2977
Number of extensions: 1884406
Number of successful extensions: 4414
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4395
Number of HSP's gapped (non-prelim): 17
length of query: 137
length of database: 189,106,746
effective HSP length: 52
effective length of query: 85
effective length of database: 157,985,422
effective search space: 13428760870
effective search space used: 13428760870
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)