BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0880 (PAB0880) DE:Hypothetical protein
(369 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75043 hypothetical protein PAB0880 - Pyrococcus abyssi (st... 745 0.0
pir||H71117 hypothetical protein PH0711 - Pyrococcus horikoshii ... 607 e-173
pir||T43853 conserved hypothetical protein [imported] - Pyrococc... 517 e-146
gi|11497652 A. fulgidus predicted coding region AF0031 [Archaeog... 226 3e-58
pir||C72746 probable carbamoylphosphate synthetase APE0498 - Aer... 109 7e-23
gb|AAK41347.1| Conserved hypothetical protein [Sulfolobus solfat... 77 4e-13
>pir||C75043 hypothetical protein PAB0880 - Pyrococcus abyssi (strain Orsay)
>gi|5458753|emb|CAB50240.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 369
Score = 745 bits (1902), Expect = 0.0
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MRKPGEILKAILKEKGIERVGTLSRKWPYGRDIYQELAILLLEGDGAIVELEEPTAEAWD 60
MRKPGEILKAILKEKGIERVGTLSRKWPYGRDIYQELAILLLEGDGAIVELEEPTAEAWD
Sbjct: 1 MRKPGEILKAILKEKGIERVGTLSRKWPYGRDIYQELAILLLEGDGAIVELEEPTAEAWD 60
Query: 61 LEGRKVSGSRFAYVRPCMVNKFKPVVTGEDLKAKLPDYPYIIVDLMLWDKHIPKEKSKII 120
LEGRKVSGSRFAYVRPCMVNKFKPVVTGEDLKAKLPDYPYIIVDLMLWDKHIPKEKSKII
Sbjct: 61 LEGRKVSGSRFAYVRPCMVNKFKPVVTGEDLKAKLPDYPYIIVDLMLWDKHIPKEKSKII 120
Query: 121 LQLRETYGVMRRMMWPKMLAITWLNDEVKERLKIPLEKIKAYEGPTSELLKDNGIKRVVL 180
LQLRETYGVMRRMMWPKMLAITWLNDEVKERLKIPLEKIKAYEGPTSELLKDNGIKRVVL
Sbjct: 121 LQLRETYGVMRRMMWPKMLAITWLNDEVKERLKIPLEKIKAYEGPTSELLKDNGIKRVVL 180
Query: 181 LDPNADEVLSSNDLKEKAFIIGGIVDMKGDKKGTTAKIGEVLEREGIDVLRRKIVLRGDV 240
LDPNADEVLSSNDLKEKAFIIGGIVDMKGDKKGTTAKIGEVLEREGIDVLRRKIVLRGDV
Sbjct: 181 LDPNADEVLSSNDLKEKAFIIGGIVDMKGDKKGTTAKIGEVLEREGIDVLRRKIVLRGDV 240
Query: 241 VGVPNRINHITEILLRMLYGEPMEKAILAVQAPAHARWRLRKEIPKRKIRYLIDGKLYLV 300
VGVPNRINHITEILLRMLYGEPMEKAILAVQAPAHARWRLRKEIPKRKIRYLIDGKLYLV
Sbjct: 241 VGVPNRINHITEILLRMLYGEPMEKAILAVQAPAHARWRLRKEIPKRKIRYLIDGKLYLV 300
Query: 301 VEKELYDELREWLNIRWEDFVKVLRETGMVALERKRIHHLNKISMYRLDKSGGKRVILLK 360
VEKELYDELREWLNIRWEDFVKVLRETGMVALERKRIHHLNKISMYRLDKSGGKRVILLK
Sbjct: 301 VEKELYDELREWLNIRWEDFVKVLRETGMVALERKRIHHLNKISMYRLDKSGGKRVILLK 360
Query: 361 RAALLCYNC 369
RAALLCYNC
Sbjct: 361 RAALLCYNC 369
>pir||H71117 hypothetical protein PH0711 - Pyrococcus horikoshii
>gi|3257119|dbj|BAA29802.1| (AP000003) 419aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 419
Score = 607 bits (1548), Expect = e-173
Identities = 290/368 (78%), Positives = 334/368 (89%)
Query: 1 MRKPGEILKAILKEKGIERVGTLSRKWPYGRDIYQELAILLLEGDGAIVELEEPTAEAWD 60
M+KPG++L+ IL+EKGI VGTLSRKWP GRDIYQELA+LLLEGDGAIVELEE T+E+WD
Sbjct: 51 MKKPGDVLREILQEKGIISVGTLSRKWPSGRDIYQELALLLLEGDGAIVELEEETSESWD 110
Query: 61 LEGRKVSGSRFAYVRPCMVNKFKPVVTGEDLKAKLPDYPYIIVDLMLWDKHIPKEKSKII 120
L G+KV S++AYVRPC+V KFK VV G+++ +LPDYP+IIVDLMLWDKHIPKEK KI
Sbjct: 111 LNGKKVGPSKYAYVRPCLVEKFKVVVDGDEIARRLPDYPWIIVDLMLWDKHIPKEKDKIT 170
Query: 121 LQLRETYGVMRRMMWPKMLAITWLNDEVKERLKIPLEKIKAYEGPTSELLKDNGIKRVVL 180
LQ+RETY VMRRM +P+ AITW+N+E K++ K+PLEKI +YEG T+E LK+ GI RVVL
Sbjct: 171 LQVRETYAVMRRMYYPRKFAITWINEEYKKKNKLPLEKIVSYEGTTAEFLKERGINRVVL 230
Query: 181 LDPNADEVLSSNDLKEKAFIIGGIVDMKGDKKGTTAKIGEVLEREGIDVLRRKIVLRGDV 240
LDPNADE LS DL+EKAFIIGGIVDMKGDKKGTTAKIGEVL++EGI+VLRRKIVLRGDV
Sbjct: 231 LDPNADEALSEKDLEEKAFIIGGIVDMKGDKKGTTAKIGEVLKKEGIEVLRRKIVLRGDV 290
Query: 241 VGVPNRINHITEILLRMLYGEPMEKAILAVQAPAHARWRLRKEIPKRKIRYLIDGKLYLV 300
+GVP+RINHITEIL+RMLYGEPME+AILAVQAP HARWRLR+EIPKRKIRYLIDGKLYLV
Sbjct: 291 IGVPDRINHITEILIRMLYGEPMERAILAVQAPTHARWRLRREIPKRKIRYLIDGKLYLV 350
Query: 301 VEKELYDELREWLNIRWEDFVKVLRETGMVALERKRIHHLNKISMYRLDKSGGKRVILLK 360
VEKEL+DEL+ WLNIRWEDFVKVLRETG++ALER+RIH LNKIS YR D++GGKRVILLK
Sbjct: 351 VEKELFDELKGWLNIRWEDFVKVLRETGIIALERRRIHRLNKISTYRPDRNGGKRVILLK 410
Query: 361 RAALLCYN 368
RAALLCYN
Sbjct: 411 RAALLCYN 418
>pir||T43853 conserved hypothetical protein [imported] - Pyrococcus furiosus
(fragment) >gi|3374505|dbj|BAA32015.1| (AB016521)
hypothetical protein [Pyrococcus furiosus]
Length = 312
Score = 517 bits (1318), Expect = e-146
Identities = 244/312 (78%), Positives = 281/312 (89%)
Query: 58 AWDLEGRKVSGSRFAYVRPCMVNKFKPVVTGEDLKAKLPDYPYIIVDLMLWDKHIPKEKS 117
+WDL G+KV S++AYVRPC V KFK +V G ++ +LPDYP+IIVDL W++HIPKEK
Sbjct: 1 SWDLNGKKVGPSKYAYVRPCFVEKFKVIVDGSEIAKRLPDYPWIIVDLTFWNRHIPKEKD 60
Query: 118 KIILQLRETYGVMRRMMWPKMLAITWLNDEVKERLKIPLEKIKAYEGPTSELLKDNGIKR 177
K+ LQLRETY V+RRM +P+ AITW+N+E K++ K+PLEK+ +YEG T++ L++ GI R
Sbjct: 61 KVALQLRETYAVVRRMYYPRRFAITWVNEEFKKKNKVPLEKVVSYEGSTADFLREKGITR 120
Query: 178 VVLLDPNADEVLSSNDLKEKAFIIGGIVDMKGDKKGTTAKIGEVLEREGIDVLRRKIVLR 237
VVLLDPNA+EVLS DL+E+AFIIGGIVDMKGDKKGTTAKIGEVLE+EGIDVLRRKIVLR
Sbjct: 121 VVLLDPNAEEVLSREDLQERAFIIGGIVDMKGDKKGTTAKIGEVLEKEGIDVLRRKIVLR 180
Query: 238 GDVVGVPNRINHITEILLRMLYGEPMEKAILAVQAPAHARWRLRKEIPKRKIRYLIDGKL 297
GD+VGVP+RINHI EILLRMLYGE MEKAILAVQAP HARWRLRKEIPKRKIRYLIDGKL
Sbjct: 181 GDIVGVPDRINHIAEILLRMLYGEDMEKAILAVQAPTHARWRLRKEIPKRKIRYLIDGKL 240
Query: 298 YLVVEKELYDELREWLNIRWEDFVKVLRETGMVALERKRIHHLNKISMYRLDKSGGKRVI 357
YLVVEKELYDEL++WLNIRWEDFVKVLRETGMVALER+RIHHLNKIS++R DKSGGKRVI
Sbjct: 241 YLVVEKELYDELKQWLNIRWEDFVKVLRETGMVALERRRIHHLNKISVFRFDKSGGKRVI 300
Query: 358 LLKRAALLCYNC 369
LLKRAALLCYNC
Sbjct: 301 LLKRAALLCYNC 312
>gi|11497652 A. fulgidus predicted coding region AF0031 [Archaeoglobus fulgidus]
>gi|7483334|pir||G69253 hypothetical protein AF0031 -
Archaeoglobus fulgidus >gi|2650622|gb|AAB91199.1|
(AE001104) A. fulgidus predicted coding region AF0031
[Archaeoglobus fulgidus]
Length = 339
Score = 226 bits (571), Expect = 3e-58
Identities = 132/331 (39%), Positives = 190/331 (56%), Gaps = 19/331 (5%)
Query: 6 EILKAILKEKGIERVGTLSRKWPYGRDIYQELAILLLEGDGAIVELEEPTAEAWDLEGRK 65
++ + L +G+ RVGT +K D +A+ + G + + + ++ L+G+
Sbjct: 5 DVFVSELARRGVSRVGTRLKKVMSSPDPIARMALYVANGKADVCKSDGGLQHSFTLDGQF 64
Query: 66 VSGSRFAYVRPCMVNKFKPVVTGEDLKAKLPDYPYIIVDLMLWDKHIPKEKSKIILQLRE 125
V AYV C + ++ D K P +PY++VD +D+H KE+ KI LQ+++
Sbjct: 65 VDLPPNAYVGKCRSD----ILLTRDELTKHP-FPYVVVDCRFFDEHSEKERWKIELQVKQ 119
Query: 126 TYGVMRRMMWPKMLAITWLNDEVKERLKIPLEKIKAYEGPTSELLKDNGIKRVVLLDPNA 185
T G++R MW + L +T+ N + Y T E L++ GI+RVVLLDPN
Sbjct: 120 TLGIVREYMWDEKLVVTYRNVGFGK-----------YYPSTEEFLREKGIERVVLLDPNG 168
Query: 186 DEVLSSNDLKEKAFIIGGIVDMKGDKKGTTAKIGEVLEREGIDVLRRKIVLRGDVVGVPN 245
DE+ + FIIGGIVD G K+G T++IG LEREG++V R+I LRGD VGVP+
Sbjct: 169 DELYRRTGAE--CFIIGGIVDKSGTKRGYTSRIGRALEREGVEVDYRRIELRGDTVGVPD 226
Query: 246 RINHITEILLRM-LYGEPMEKAILAVQAPAHARWRLRKEIPKRKIRYLIDGKLYLVVEKE 304
RINHI EILLR+ L GE +E AI AVQ P A+WRLRKE+ ++ +R + ++ VVEK
Sbjct: 227 RINHIAEILLRVELDGEDVESAIKAVQPPLVAKWRLRKELHEKTVRVCVGERVVRVVEKG 286
Query: 305 LYDELREWLNIRWEDFVKVLRETGMVALERK 335
+DE REWLNI DF V RE + K
Sbjct: 287 AFDEFREWLNITMRDFYDVCREQKFFVVSEK 317
>pir||C72746 probable carbamoylphosphate synthetase APE0498 - Aeropyrum pernix
(strain K1) >gi|5104147|dbj|BAA79463.1| (AP000059) 357aa
long hypothetical carbamoylphosphate synthetase
[Aeropyrum pernix]
Length = 357
Score = 109 bits (269), Expect = 7e-23
Identities = 110/341 (32%), Positives = 160/341 (46%), Gaps = 35/341 (10%)
Query: 3 KPGEILKAILKEKGIERVGTLSRKW---PYGRDI-YQELAILLLEGDGAIVELEEPTA-- 56
+P E L +L GI RVG SR W P R++ +Q LA+ L + A+ E
Sbjct: 11 RPEEALLHLLDAAGIYRVG--SRVWLHKPRVRELGFQYLAVETLVREYALAAEREYRGSV 68
Query: 57 ---------EAWDLEGRKVSGSRFAYVRPCMVNKFKPVVTGEDLKAKLPD--YPYIIVDL 105
E L GR + + P V + + + L+ LP P +VDL
Sbjct: 69 VYSKVYGGREYKILLGRGEEVAEASLADPSTVQRL--LFSWRHLEELLPSPPLPAFVVDL 126
Query: 106 MLWDKHIPKEKSKIILQLRETYGVMRRMMWPKMLAITWLNDEVKERLKIPL--EKIKAYE 163
L H +E SK+ LQ+ +R+ +W L +T ++ + + L K+ +
Sbjct: 127 SLKFMHTEEELSKLRLQIAVALSEVRKYLWDPHLVLTNMDPQTSGWISEVLGDNKVTISQ 186
Query: 164 GPTSELLKDNGIKRVVLLDPNADEVLSSND-LKEKAFIIGGIVDMKGDKKGTTAKIGEVL 222
SE+L RVV+L P+A + LS ++ L AF+IGGIVD + ++I + L
Sbjct: 187 SKPSEILWSMDADRVVILRPDAPQPLSGSEVLAADAFLIGGIVDRI--PRPGVSRILDNL 244
Query: 223 EREGIDVLRRKIVLRGDVVGVPNRINHITEILLRMLYGEP--MEKAILAVQAPAHARWRL 280
G+ R+I LRG V GVP RIN I EILL+ Y P +EKAI+ R+
Sbjct: 245 VPWGVP---RRIELRGSVAGVPERINRIVEILLKARYKYPGNLEKAIITSMTKKDVLTRV 301
Query: 281 RKEIPKRKIRYLIDGKLYLVVEKELYDELREWLNIRWEDFV 321
EI KR R + LVVE LY++L WL + EDF+
Sbjct: 302 YSEIIKRGRRVGSE----LVVEWSLYEDLSSWLPLTPEDFM 338
>gb|AAK41347.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 308
Score = 76.9 bits (186), Expect = 4e-13
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 19/216 (8%)
Query: 95 LPDYPYIIVDLMLWDKHIPKEKSKIILQLRETYGVMRRMMWPKMLAITWLNDEVKERLKI 154
+P+ P I+DL D +EK + Q+ + +R ++ L + D K +
Sbjct: 92 IPENPQFIIDLGNMDLLQDEEKISLEQQILVSIKTIREYLFDYNLKLAHTPDSFKLEGRN 151
Query: 155 PLEKIKAYEGPTSELLKDNGIKRVVLLDPNADEVLSSNDLKE-KAFIIGGIVDMKGDKKG 213
+E + + + KDN I +L+P D + + ++ K FIIGGIVD K
Sbjct: 152 KIEIL-------NYIPKDNAI----VLNPYGDTIANEEIIRNTKFFIIGGIVDKGRRLKN 200
Query: 214 TTAKIGEVLEREGIDVLRR-KIVLRGDVVGVPNRINHITEILLRMLYGEPMEKAILAVQA 272
T E+ R G D L + KI LR VGVP+RIN I EILL+++ G +E+AI++ Q+
Sbjct: 201 ATY---ELSRRYGYDELPQVKISLRNSTVGVPDRINSIIEILLKVIVGYNLEEAIISTQS 257
Query: 273 PAHARWRLRKE---IPKRKIRYLIDGKLYLVVEKEL 305
A RL KE + K ++D K +L ++ L
Sbjct: 258 NADKVSRLIKELNTLDKFDYNTILDLKNWLKIDDRL 293
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.142 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140748483
Number of Sequences: 2977
Number of extensions: 6167207
Number of successful extensions: 16117
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16103
Number of HSP's gapped (non-prelim): 6
length of query: 369
length of database: 189,106,746
effective HSP length: 54
effective length of query: 315
effective length of database: 156,788,448
effective search space: 49388361120
effective search space used: 49388361120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)