BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0882 (PAB0882) DE:Hypothetical protein
(161 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UZ20|Y882_PYRAB HYPOTHETICAL PROTEIN PAB0882 >gi|7450902|pi... 319 1e-86
sp|O58440|Y709_PYRHO HYPOTHETICAL PROTEIN PH0709 >gi|7450903|pir... 254 4e-67
sp|O27890|YI62_METTH HYPOTHETICAL PROTEIN MTH1862 >gi|7450901|pi... 110 1e-23
gb|AAK42387.1| Conserved hypothetical protein [Sulfolobus solfat... 104 4e-22
sp|Q58869|YE74_METJA HYPOTHETICAL PROTEIN MJ1474 >gi|2129261|pir... 100 1e-20
gi|11497997 conserved hypothetical protein [Archaeoglobus fulgid... 89 2e-17
sp|P57674|Y041_THEAC HYPOTHETICAL PROTEIN TA0041 >gi|10639188|em... 85 5e-16
sp|Q9YD10|YB02_AERPE HYPOTHETICAL PROTEIN APE1102 >gi|7516258|pi... 79 2e-14
gb|AAG20166.1| (AE005094) Vng1994c [Halobacterium sp. NRC-1] 77 9e-14
>sp|Q9UZ20|Y882_PYRAB HYPOTHETICAL PROTEIN PAB0882 >gi|7450902|pir||E75043 conserved
hypothetical protein PAB0882 - Pyrococcus abyssi
(strain Orsay) >gi|5458755|emb|CAB50242.1| (AJ248287)
hypothetical protein [Pyrococcus abyssi]
Length = 161
Score = 319 bits (808), Expect = 1e-86
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MLLKLKLVLDSSVFIQGLDIEGYTTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEAL 60
MLLKLKLVLDSSVFIQGLDIEGYTTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEAL
Sbjct: 1 MLLKLKLVLDSSVFIQGLDIEGYTTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEAL 60
Query: 61 RAVKNAALKTGEIEELSEADLEVLALAYELKAEVFSDDYNVQNVARILGLKFRTLKRGIK 120
RAVKNAALKTGEIEELSEADLEVLALAYELKAEVFSDDYNVQNVARILGLKFRTLKRGIK
Sbjct: 61 RAVKNAALKTGEIEELSEADLEVLALAYELKAEVFSDDYNVQNVARILGLKFRTLKRGIK 120
Query: 121 KVIKWQYVCIGCGRKFKEMPPGGICPDCGSPVKLIPRRQRS 161
KVIKWQYVCIGCGRKFKEMPPGGICPDCGSPVKLIPRRQRS
Sbjct: 121 KVIKWQYVCIGCGRKFKEMPPGGICPDCGSPVKLIPRRQRS 161
>sp|O58440|Y709_PYRHO HYPOTHETICAL PROTEIN PH0709 >gi|7450903|pir||F71117 conserved
hypothetical protein PH0709 - Pyrococcus horikoshii
>gi|3257117|dbj|BAA29800.1| (AP000003) 161aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 161
Score = 254 bits (642), Expect = 4e-67
Identities = 118/157 (75%), Positives = 140/157 (89%)
Query: 3 LKLKLVLDSSVFIQGLDIEGYTTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEALRA 62
LK LVLDSSVFIQG+DIEGYTTP VV+E+KDRES+I LESLIS+GKVK+ EPSKE++
Sbjct: 5 LKKTLVLDSSVFIQGIDIEGYTTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESIDR 64
Query: 63 VKNAALKTGEIEELSEADLEVLALAYELKAEVFSDDYNVQNVARILGLKFRTLKRGIKKV 122
+ A +TGE+ ELS+AD+EVLALAYELK E+FSDDYNVQN+A +LGL+FRTLKRGIKKV
Sbjct: 65 IIQVAKETGEVNELSKADIEVLALAYELKGEIFSDDYNVQNIASLLGLRFRTLKRGIKKV 124
Query: 123 IKWQYVCIGCGRKFKEMPPGGICPDCGSPVKLIPRRQ 159
IKW+YVCIGCGRKF +PPGG+CPDCGS VKLIPR++
Sbjct: 125 IKWRYVCIGCGRKFSTLPPGGVCPDCGSKVKLIPRKR 161
>sp|O27890|YI62_METTH HYPOTHETICAL PROTEIN MTH1862 >gi|7450901|pir||B69116 conserved
hypothetical protein MTH1862 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622999|gb|AAB86328.1| (AE000939) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 171
Score = 110 bits (272), Expect = 1e-23
Identities = 61/165 (36%), Positives = 97/165 (57%), Gaps = 10/165 (6%)
Query: 5 LKLVLDSSVFIQGLDIEG---YTTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEALR 61
+K VLD+S FI G EG YT V +E++D S ++LE + G++K+ EP E+++
Sbjct: 9 MKKVLDASAFINGYVPEGRENYTVRSVTEEIRDFRSMMILEDALREGRLKITEPDPESMK 68
Query: 62 AVKNAALKTGEIEELSEADLEVLALAYELKAE----VFSDDYNVQNVARILGLKFRT-LK 116
V++A ++G+I LS D+EV+ LA L+ + V +DDY +QN +ILG+ FR+ L
Sbjct: 69 VVEDAISESGDIMRLSPTDMEVIGLAVSLRGKDDVTVITDDYTIQNTLKILGIGFRSVLT 128
Query: 117 RGIKKVIKWQYVCIGCGRKFKEMPPGGICPDCGSPVKLIPRRQRS 161
GI+ W+ VC GC R + C CGS +++ +R R+
Sbjct: 129 SGIRDTYSWRRVCTGCRRVYPLDYEFEECEICGS--RIVRKRHRN 171
>gb|AAK42387.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 158
Score = 104 bits (258), Expect = 4e-22
Identities = 62/160 (38%), Positives = 100/160 (61%), Gaps = 11/160 (6%)
Query: 5 LKLVLDSSVFIQGLDIE---GYTTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEALR 61
+ ++ D+S F+ GL + YTT +V++E+KD+ SR LE ISSGKV +++PS ++
Sbjct: 1 MHIIFDTSGFLSGLQLSLDRVYTTQEVINEIKDKYSRFNLEIAISSGKVIIMKPSTRSVE 60
Query: 62 AVKNAALKTGEIEELSEADLEVLALAYELKAE-VFSDDYNVQNVARILGLKFRTLK--RG 118
V T E +LS D+ V+ALA +L+ VF+DD +VQN+ + LG++F ++K +
Sbjct: 61 KVTKVLNLTKE-RKLSNTDISVIALALDLQPSIVFTDDLSVQNILKQLGIQFSSVKINKK 119
Query: 119 IKKVIKWQYVCIGCGRKFKEMPPGGICPDCGSPVKLIPRR 158
++K K++YVC+ C R+F G CP CG K++ RR
Sbjct: 120 VEKSFKFKYVCVNCKREFN--IDHGECPYCGG--KVVKRR 155
>sp|Q58869|YE74_METJA HYPOTHETICAL PROTEIN MJ1474 >gi|2129261|pir||A64484 conserved
hypothetical protein MJ1474 [imported] - Methanococcus
jannaschii >gi|1592113|gb|AAB99480.1| (U67588) ribosomal
protein S15A isolog [Methanococcus jannaschii]
Length = 197
Score = 99.8 bits (245), Expect = 1e-20
Identities = 57/158 (36%), Positives = 96/158 (60%), Gaps = 11/158 (6%)
Query: 2 LLKLKLVLDSSVFIQGLDI-----EGYTTPKVVDEVKDRESRILLESLISSGKVKVVEPS 56
++K+K VLD+S I G + E YTTP+V++E++ + +I++E + GK+K++ P+
Sbjct: 30 IMKVK-VLDASAIIHGYNPIIEEGEHYTTPEVLEEIESK--KIIVEQALDFGKLKIMSPN 86
Query: 57 KEALRAVKNAALKTGEIEELSEADLEVLALAYELKAEVFSDDYNVQNVARILGLKFRTLK 116
+E ++ V+ KTG+ LS+ D+ VLALA L A +++DDY +QNVA+ L ++ R +
Sbjct: 87 REYIKKVEEVVKKTGD--NLSQQDIGVLALALNLNAILYTDDYGIQNVAKKLNIEVRGIA 144
Query: 117 -RGIKKVIKWQYVCIGCGRKFKEMPPGGICPDCGSPVK 153
K W+ +C GC + + IC CGSP+K
Sbjct: 145 FEPTNKDFIWRKICEGCKKLYPVDYEEDICEICGSPLK 182
>gi|11497997 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|11387249|sp|O29862|Y385_ARCFU HYPOTHETICAL PROTEIN
AF0385 >gi|7450904|pir||A69298 conserved hypothetical
protein AF0385 - Archaeoglobus fulgidus
>gi|2650249|gb|AAB90852.1| (AE001078) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 166
Score = 89.3 bits (218), Expect = 2e-17
Identities = 62/151 (41%), Positives = 83/151 (54%), Gaps = 16/151 (10%)
Query: 8 VLDSSVFIQGLDI--EGYTTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEALRAVKN 65
V+DSS Q + T P+VV E+ D S + S +V E S E++ VK
Sbjct: 8 VIDSSAIFQRKAVYRNMVTVPEVVAEILDEASALYF----SVKNFRVEEASPESVEEVKE 63
Query: 66 AALKTGEIEELSEADLEVLALAY-ELK----AEVFSDDYNVQNVARILGLKF-RTLKRGI 119
AA KTG+I +LS+ D++VLA A E+K + +DDY +QNVA LG++F L R I
Sbjct: 64 AARKTGDIHKLSDTDIKVLAKALDEIKKGNEVVLVTDDYAIQNVAMSLGIRFDGILHRQI 123
Query: 120 KKVIKWQYVCIGCGRKFKEMPPGGICPDCGS 150
K KW VC GCGR+ + ICP CGS
Sbjct: 124 SKEFKWVKVCRGCGRRIE----SEICPVCGS 150
>sp|P57674|Y041_THEAC HYPOTHETICAL PROTEIN TA0041 >gi|10639188|emb|CAC11190.1| (AL445063)
conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 194
Score = 84.7 bits (206), Expect = 5e-16
Identities = 50/128 (39%), Positives = 73/128 (56%), Gaps = 7/128 (5%)
Query: 28 VVDEVKDRESRILLESLISSGKVKVVEPSKEALRAVKNAALKTGEIEELSEADLEVLALA 87
V+ E+K + R +++ L+ ++V P E L+ V+ A KTG++ LS+ D +VLALA
Sbjct: 59 VIGEIKKGKLRYMIDVLLPM--IRVASPDHEYLKIVEETAAKTGDLMNLSQTDKDVLALA 116
Query: 88 YELKAEVFSDDYNVQNVARILGLKF--RTLKRGIKKVIKWQYVCIGCGRKFKEMPPGGIC 145
+ A + +DDY++QNVA L L F +KR I K I W Y C GC + F P +C
Sbjct: 117 LQYDATIVTDDYSIQNVASYLNLGFLNANIKR-IDKQIAWIYRCTGCKKVFP--GPVKVC 173
Query: 146 PDCGSPVK 153
CG VK
Sbjct: 174 DICGHEVK 181
>sp|Q9YD10|YB02_AERPE HYPOTHETICAL PROTEIN APE1102 >gi|7516258|pir||G72710 hypothetical
protein APE1102 - Aeropyrum pernix (strain K1)
>gi|5104772|dbj|BAA80087.1| (AP000060) 139aa long
hypothetical protein [Aeropyrum pernix]
Length = 139
Score = 79.2 bits (192), Expect = 2e-14
Identities = 50/113 (44%), Positives = 69/113 (60%), Gaps = 9/113 (7%)
Query: 7 LVLDSSVFIQG----LDIEGYTTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEALRA 62
+VLD+ FI G L T P+V++EV+DR SR LLE L S+G+++V+ PS AL
Sbjct: 16 IVLDTGAFIAGKAAALPGRLATPPRVLEEVRDRGSRSLLELLQSTGRLEVLAPSTRALER 75
Query: 63 VKNAALKTGEIEELSEADLEVLALAYEL-----KAEVFSDDYNVQNVARILGL 110
+ A + G + LS ADLEVLALA +L + V +DDY +Q +A LGL
Sbjct: 76 AREEARRAGVLGRLSGADLEVLALALDLAWQGCRVAVATDDYTLQRLAARLGL 128
>gb|AAG20166.1| (AE005094) Vng1994c [Halobacterium sp. NRC-1]
Length = 109
Score = 77.3 bits (187), Expect = 9e-14
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 50 VKVVEPSKEALRAVKNAALKTGEIEELSEADLEVLALAYELKAEVFSDDYNVQNVARILG 109
++V P+++A AV+ AA TG+ + LSE D +LA A+EL + SDDY +QNVA L
Sbjct: 1 MRVHVPAQDAREAVRQAAATTGDADVLSETDRRLLATAHELDGTLVSDDYAMQNVAAELA 60
Query: 110 LKFRTLKR-GIKKVIKWQYVCIGCGRKFKEMPPGGICPDCGSPVK 153
+ ++ + GI + W+ C GCGR+F + CP CGSP++
Sbjct: 61 VTVESISQDGITERRDWRLQCQGCGREFDDTDHDR-CPVCGSPLE 104
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56448435
Number of Sequences: 2977
Number of extensions: 2104457
Number of successful extensions: 6788
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6773
Number of HSP's gapped (non-prelim): 9
length of query: 161
length of database: 189,106,746
effective HSP length: 55
effective length of query: 106
effective length of database: 156,189,961
effective search space: 16556135866
effective search space used: 16556135866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)