BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0885 (PAB0885) DE:Hypothetical protein
(440 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75044 hypothetical protein PAB0885 - Pyrococcus abyssi (st... 857 0.0
pir||E71116 hypothetical protein PH0700 - Pyrococcus horikoshii ... 631 e-180
emb|CAC11303.1| (AL445063) conserved hypothetical protein [Therm... 124 2e-27
pir||D71112 hypothetical protein PH0667 - Pyrococcus horikoshii ... 88 2e-16
gb|AAK42856.1| Conserved hypothetical protein [Sulfolobus solfat... 85 1e-15
pir||E75048 multidrug resistance protein PAB0913 - Pyrococcus ab... 76 8e-13
dbj|BAB03956.1| (AP001507) multidrug-efflux transporter [Bacillu... 75 2e-12
pir||G64494 quinolone resistance protein norA homolog - Methanoc... 73 5e-12
>pir||B75044 hypothetical protein PAB0885 - Pyrococcus abyssi (strain Orsay)
>gi|5458760|emb|CAB50247.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 440
Score = 857 bits (2189), Expect = 0.0
Identities = 440/440 (100%), Positives = 440/440 (100%)
Query: 1 MRYLKRKNVIMLKSREKAKYSLKVKKRGKWFYSFILFKVFSGGMAPLVPILIVNEGGTPT 60
MRYLKRKNVIMLKSREKAKYSLKVKKRGKWFYSFILFKVFSGGMAPLVPILIVNEGGTPT
Sbjct: 1 MRYLKRKNVIMLKSREKAKYSLKVKKRGKWFYSFILFKVFSGGMAPLVPILIVNEGGTPT 60
Query: 61 EIGYTSGLGSLASMIGGVIWGRLSDKLGRRKIFMSLGIFGSTISVILMSVSLSIKSLIFL 120
EIGYTSGLGSLASMIGGVIWGRLSDKLGRRKIFMSLGIFGSTISVILMSVSLSIKSLIFL
Sbjct: 61 EIGYTSGLGSLASMIGGVIWGRLSDKLGRRKIFMSLGIFGSTISVILMSVSLSIKSLIFL 120
Query: 121 NILYMFFLAATIPLPISIISREFRKYEINEAIGKFNKLGGWGWVGGLILGFALINFANPR 180
NILYMFFLAATIPLPISIISREFRKYEINEAIGKFNKLGGWGWVGGLILGFALINFANPR
Sbjct: 121 NILYMFFLAATIPLPISIISREFRKYEINEAIGKFNKLGGWGWVGGLILGFALINFANPR 180
Query: 181 IAILGLGALGILSGILTIKRIKEVPIHPSRFRVNGIIPSLFTFHPRKITLSTPKLRDEIL 240
IAILGLGALGILSGILTIKRIKEVPIHPSRFRVNGIIPSLFTFHPRKITLSTPKLRDEIL
Sbjct: 181 IAILGLGALGILSGILTIKRIKEVPIHPSRFRVNGIIPSLFTFHPRKITLSTPKLRDEIL 240
Query: 241 RIVFISSFLFWIGSMLALTQFPVLAKEKGLDGETLYFVSISSSVTSALTYQRVANSIVGI 300
RIVFISSFLFWIGSMLALTQFPVLAKEKGLDGETLYFVSISSSVTSALTYQRVANSIVGI
Sbjct: 241 RIVFISSFLFWIGSMLALTQFPVLAKEKGLDGETLYFVSISSSVTSALTYQRVANSIVGI 300
Query: 301 GILNYVNGLILRSLGLAGLLFVVPLPSKTFLLASILVYSILGYSWAMISISTSSIISARS 360
GILNYVNGLILRSLGLAGLLFVVPLPSKTFLLASILVYSILGYSWAMISISTSSIISARS
Sbjct: 301 GILNYVNGLILRSLGLAGLLFVVPLPSKTFLLASILVYSILGYSWAMISISTSSIISARS 360
Query: 361 SENTRGRIFGSYNLVCSSGAIIGSLGSGYLANNIGMQGDLAIGLSLMIPAIYVNSKILKK 420
SENTRGRIFGSYNLVCSSGAIIGSLGSGYLANNIGMQGDLAIGLSLMIPAIYVNSKILKK
Sbjct: 361 SENTRGRIFGSYNLVCSSGAIIGSLGSGYLANNIGMQGDLAIGLSLMIPAIYVNSKILKK 420
Query: 421 EVQPLNFGLFERSRGKGLGL 440
EVQPLNFGLFERSRGKGLGL
Sbjct: 421 EVQPLNFGLFERSRGKGLGL 440
>pir||E71116 hypothetical protein PH0700 - Pyrococcus horikoshii
>gi|3257108|dbj|BAA29791.1| (AP000003) 439aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 439
Score = 631 bits (1610), Expect = e-180
Identities = 310/440 (70%), Positives = 368/440 (83%), Gaps = 1/440 (0%)
Query: 1 MRYLKRKNVIMLKSREKAKYSLKVKKRGKWFYSFILFKVFSGGMAPLVPILIVNEGGTPT 60
MR LK++ +I LKSREKAKYS +KKRG+WFY FILFKVFSGGMAPL+P LIVNEGG T
Sbjct: 1 MRRLKKQELIALKSREKAKYSSSIKKRGEWFYPFILFKVFSGGMAPLIPSLIVNEGGGST 60
Query: 61 EIGYTSGLGSLASMIGGVIWGRLSDKLGRRKIFMSLGIFGSTISVILMSVSLSIKSLIFL 120
E+GY SG GSLASM+GG+IWGRLSD+LGRRKI M LGIFGS+ISV+LM +SLSIK I L
Sbjct: 61 EVGYASGFGSLASMVGGMIWGRLSDRLGRRKILMILGIFGSSISVLLMGISLSIKWTIIL 120
Query: 121 NILYMFFLAATIPLPISIISREFRKYEINEAIGKFNKLGGWGWVGGLILGFALINFANPR 180
NI YMFFLAATIPLP+S+ISREFR+YEIN+AIG+FN+LGGWGWV GLILGF LI NPR
Sbjct: 121 NIFYMFFLAATIPLPLSLISREFRRYEINKAIGRFNELGGWGWVVGLILGFTLITLVNPR 180
Query: 181 IAILGLGALGILSGILTIKRIKEVPIHPSRFRVNGIIPSLFTFHPRKITLSTPKLRDEIL 240
I L LG LG+LS + +IKEVPIH ++NG PS+FTFHPR+++L+ P+++D +L
Sbjct: 181 ITTLTLGLLGVLSAVFMRSKIKEVPIHIKGIKING-TPSIFTFHPRRVSLTRPQVQDGML 239
Query: 241 RIVFISSFLFWIGSMLALTQFPVLAKEKGLDGETLYFVSISSSVTSALTYQRVANSIVGI 300
+ +F+SSFLFW+GSML LTQ+P++AK KG DG+ LY VSISSSVTSAL YQRVANSI+G
Sbjct: 240 KTMFVSSFLFWLGSMLVLTQYPIIAKSKGFDGKALYLVSISSSVTSALMYQRVANSIIGS 299
Query: 301 GILNYVNGLILRSLGLAGLLFVVPLPSKTFLLASILVYSILGYSWAMISISTSSIISARS 360
G+LNYV GLILR LGL GLLF LPS FL AS+L+YSILGYSWA++SISTSSIIS+R+
Sbjct: 300 GMLNYVEGLILRGLGLMGLLFSTLLPSNMFLPASMLMYSILGYSWAIVSISTSSIISSRT 359
Query: 361 SENTRGRIFGSYNLVCSSGAIIGSLGSGYLANNIGMQGDLAIGLSLMIPAIYVNSKILKK 420
EN RGRIFGSYN +CSSGAIIGSLGSGYL N +G+Q D IGL L++P IY++SKIL++
Sbjct: 360 PENKRGRIFGSYNFICSSGAIIGSLGSGYLINKMGIQVDFMIGLWLILPGIYMSSKILRR 419
Query: 421 EVQPLNFGLFERSRGKGLGL 440
E QPLNFGL R GKGLGL
Sbjct: 420 EGQPLNFGLLLRRSGKGLGL 439
>emb|CAC11303.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 427
Score = 124 bits (308), Expect = 2e-27
Identities = 102/418 (24%), Positives = 203/418 (48%), Gaps = 33/418 (7%)
Query: 29 KWFYSFILFKVFSGGMAPLVPI-LIVNEGGTPTEIGYTSGLGSLASMIGGVIWGRLSDKL 87
+WF S+++ + SG P++P+ ++V +G S + S AS+ ++WG LSD +
Sbjct: 5 RWFASYLMSSMASGITNPMIPLFVVVYLHSNVFFVGLASAVSSAASVPALILWGDLSDAV 64
Query: 88 GRRKIFMSLGIFGSTISVILMSVSLSIKSLIFLNILYMFFLAATIPLPISIISREFRKYE 147
+RKIF+ +G FG+ +S + + SI + + I + A++P+ ++ + +
Sbjct: 65 SKRKIFVLIGFFGAFVSFLPIVFVHSIYQYLAILITFQVLAMASVPVSTIMLLEQNDRSV 124
Query: 148 INEAIGKFNKLGGWGWVGGLILGFALINFAN-----PRIAILGLGALGILSGILTIKRIK 202
+ I KF+ + G G V GL LG ALI F P + I+ A+ +++GI+ ++ I
Sbjct: 125 WPQIISKFSMVSGIGSVLGLGLGTALITFYYSPSDLPYVYIVS-SAVYLIAGIMALRFIH 183
Query: 203 EVPIHPSR-FRVNGIIPSLFTF--HPRKITLST------------PKLRDEILRIVFISS 247
E P R N I + F PR ++ +L ++ + +++
Sbjct: 184 E----PRRILNRNAIQANTFRIIERPRYFPVAVIHYLRLNGKNNGHRLDRNLVLFIAMTA 239
Query: 248 FLFWIGSMLALTQFPVLAKEKGLDGETLYFVSISSSVTSALTY---QRVANSIVGIGILN 304
FL + G + +PV+ + G + ++ + + +S S +++ R+ N I G L
Sbjct: 240 FLMF-GFQIFFVPYPVMVIDFGANNTLIFLMYMFNSAFSTVSFIFSGRIVNRIGGKTSLF 298
Query: 305 YVNGLILRSLGLAGLLFVVPLPSKTF-LLASILVYSILGYSWAMISISTSSIISARSSEN 363
+ GL+ L + + S+ +++++ +YS LG W++IS+S ++ +S +++
Sbjct: 299 LAVTTRIMVFGLSSL--IPNISSRDLAIISAVSIYSFLGGIWSIISVSQTNYVSKNATQQ 356
Query: 364 TRGRIFGSYNLVCSSGAIIGSLGSGYLANNIGMQGDLAIGLSLMIPAIYVNSKILKKE 421
TRG+ G YN + G I G L SG + G D + +++ + + +I + E
Sbjct: 357 TRGKAIGLYNSLLGVGQIFGGLVSGEVTTLFGYSIDYIMAAAVITIGMVIILRIYRGE 414
>pir||D71112 hypothetical protein PH0667 - Pyrococcus horikoshii
>gi|3257075|dbj|BAA29758.1| (AP000003) 413aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 413
Score = 87.8 bits (214), Expect = 2e-16
Identities = 102/397 (25%), Positives = 177/397 (43%), Gaps = 19/397 (4%)
Query: 6 RKNVIMLKSREKA-KYSLKVKKRGKWFYSF-ILFKVFSGGMA-PLVPILIVNEGGTPTEI 62
RKN I+ RE+A K KR F++ + F + G+ P + + + GGT +
Sbjct: 7 RKNTILQGIRERAGKARRNTLKRNITFFAIGMFFANLAWGIGYPYLTVYMKIIGGTMFLV 66
Query: 63 GYTSGLGSLASMIGGVIWGRLSDKLGRRKIFMSLGI-FGSTISVILMSVSLSIKSLIFLN 121
G S + +L S I +G LSDK+G+RK F+ LG+ F T V+++ +S I L+ L
Sbjct: 67 GLLSVIYNLTSAIFQYPFGYLSDKIGKRKPFIILGVLFSGTTYVLVIFISTPIL-LLSLR 125
Query: 122 ILYMFFLAATIPLPISIISREFRKYEINEAIGKFNKLGGWGWVGGLILGFALINFANPRI 181
A+ P ++IS + + G FN + G++ G LG ++ +
Sbjct: 126 GTQGALGASFAPAHSALISELSTR--VGSMFGFFNFVENMGFMVGNFLGGYIVKKVGIKS 183
Query: 182 AILGLGALGILSGILTIKRIKEVPIHPSRFRVNGIIPSLFTFHPRKITLSTPKLRDEI-- 239
A L + ++S IL + ++KE + + +P K+ + + + +
Sbjct: 184 AFLATSIVSLVS-ILFLTQVKER--ERKKKNIGSFLPIREGRESEKVEMKSSAFKMLMKG 240
Query: 240 -LRIVFISSFLFWIGSMLALTQFPVLAKEKGLDGETLYFVSISSSVTSALTYQRVANSIV 298
L ++S L I S PV +EK E + F+ S+ +AL + ++
Sbjct: 241 ELGAFYLSVLLAMIASGEVYATVPVYFQEK-FGEEFVGFLLGIDSLAAAL-----GSLLI 294
Query: 299 GIGILNYVNGLILRSLGLAGLLFVVPLPSKTFLLASILVYSILGYSWAMISISTSSIISA 358
G I Y + + L +L + T ++ LV + G WAMI+ S S+ ++
Sbjct: 295 GRLIDKYGEKVFYKLAILGYILTFIGYAWATTIIIMALVSLLSGVKWAMITSSASTYVAR 354
Query: 359 RSSENTRGRIFGSYNLVCSSGAIIGSLGSGYLANNIG 395
R RG+ G N + + G +IG L G +A+N G
Sbjct: 355 RVPHRERGQGMGLLNTMMTLGWVIGPLIGGLIADNFG 391
>gb|AAK42856.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 423
Score = 85.4 bits (208), Expect = 1e-15
Identities = 93/395 (23%), Positives = 172/395 (43%), Gaps = 34/395 (8%)
Query: 26 KRGKWFYSFILFKVFSGGMAPLVPILIVNEGGTPTEIGYTSGLGSLASMIGGVIWGRLSD 85
K +W Y I + +G ++ LV + I++ GG + Y L + + ++WG ++D
Sbjct: 11 KDTRWMYLIIPYNASTGPLSTLVTLQILSLGGNAINVAYAISLSNAVLIPASILWGFMAD 70
Query: 86 KLGRRKIFMSLGIFGSTISVILMSVSLSIKSLIFLNILYMFFLAATIPLPISIISRE-FR 144
++ R+K + L + G +I ++ M SI SL+ LN + F++ P +++ E
Sbjct: 71 RMDRKKQIL-LSLAGVSIPLVFMPFMNSI-SLVTLNYALITFMSTASATPFNLLIMESVE 128
Query: 145 KYEINEAIGKFNKLGGWGWVGGLILG-FALINFANPRI-AILGLGALGIL--------SG 194
K +F+ G + GL++ F +I +I ILG L L
Sbjct: 129 KKHWGSLFSRFSLFSSIGVLLGLVISTFLVILLRIDQIEEILGFSVLATLIASIKILPKP 188
Query: 195 ILTIKRIKEVPIHPSRFRVNGIIPSLF----TFHPRKITLSTPKLRDEI--LRIVFISSF 248
I+T +R + S +P +F H K+ T R I + ++++
Sbjct: 189 IITFERTAIIHHKESFLTRMRHLPMMFLHLPNIHHFKMFSMTRLFRKPINYVPLLYLGIV 248
Query: 249 LFWIGSMLALTQFPVLAKEKGLD-GETLYFVSISS-------SVTSALTYQRVANSIVGI 300
LF+I S + T +P KGL+ E L +S+ ++S L + + I
Sbjct: 249 LFYISSGIFNTVYPAGLYVKGLNKSEVLAVISVGMVFQILGFRISSMLLESKDEKGLAHI 308
Query: 301 GILNYVNGLILRSLGLAGLLFV-VPLPSKTFLLASILVYSILGYSWAMISISTSSIISAR 359
++ + G+ LG+ LF+ +P+ F+ I G ++A+ S++++I
Sbjct: 309 SLI--LRGVSYVVLGIFAQLFLGIPI----FISGLIFYPLAAGIAYAIFYSSSTTLIFKI 362
Query: 360 SSENTRGRIFGSYNLVCSSGAIIGSLGSGYLANNI 394
E +G G Y+ V +GSL SGY+ + I
Sbjct: 363 VGERRQGTGLGVYSTVVGISLFLGSLLSGYITHYI 397
>pir||E75048 multidrug resistance protein PAB0913 - Pyrococcus abyssi (strain
Orsay) >gi|5458795|emb|CAB50282.1| (AJ248287) multidrug
resistance protein [Pyrococcus abyssi]
Length = 410
Score = 76.1 bits (184), Expect = 8e-13
Identities = 109/408 (26%), Positives = 179/408 (43%), Gaps = 43/408 (10%)
Query: 22 LKVKKRGKWFYSFILFKVFSGGMA-PLVPILIVNEGGTPTEIGYTSGLGSLASMIGGVIW 80
+ ++K F + F F+ G+ P + + + GGT +G S + +L S I +
Sbjct: 22 ITMRKNILMFAIGMFFADFAWGLGFPYLGVYMKLIGGTMFLVGLLSVVYNLTSTIFQYPF 81
Query: 81 GRLSDKLGRRKIFMSLGIFGSTISVILMSVSLSIKSLIFLNILYMFFLAATIPLPISIIS 140
G LSDK G+RK F+ LGI S + L+++ S L+ L A+ P ++IS
Sbjct: 82 GYLSDKTGKRKPFIILGILASGTTYGLVALITSPILLLGLRAFQGALGASLAPAHSALIS 141
Query: 141 REFRKYEINEAIGKFNKLGGWGWVGGLILGFALINFANPRIA-ILGLGALGILS------ 193
E++ IG G +G+V L GF NFA I LG+ + I++
Sbjct: 142 ------ELSPRIGSM--FGFFGFVENL--GFMAGNFAGGYIVKTLGMKMMFIITSLVSLI 191
Query: 194 GILTIKRIKEVPIHPSRFRVNG-----IIPSLFTFHPRKITLSTPKLRDEILRIVFISSF 248
GIL + +IKE R + G + + ++ KL L I +++
Sbjct: 192 GILFLLKIKE----RGRAKAGGDRLIIVKEGRESDRVELKEIAFKKLMKGRLGIFYVAVL 247
Query: 249 LFWIGSMLALTQFPVLAKEKGLDGETLYFVSISSSVTSALTYQRVANSIVGIGILNYVNG 308
L I S V +EK + Y I S +++AL+ I+G I Y
Sbjct: 248 LAMIASGAVYATVSVYFEEKFGEEFVGYLFGIDS-LSAALSAL-----IIGRLIDKYGEK 301
Query: 309 LILRSLGLAGLLFVV---PLPSKTFLLASILVYSILGYSWAMISISTSSIISARSSENTR 365
L R L L G + L + ++A I + S G W M++ S+S+ ++ R + R
Sbjct: 302 LFFR-LSLVGYIITFMGYALANSVIIMALISILS--GLKWTMLTNSSSTYVARRVPTSER 358
Query: 366 GRIFGSYNLVCSSGAIIGSLGSGYLANNIGMQGDLAIGLSLMIPAIYV 413
G+ G N + + G +IG L G LA+N G A+ L +P +++
Sbjct: 359 GQGMGLLNTMMTLGWVIGPLIGGILADNFG----FAVMLYSTVPILFL 402
>dbj|BAB03956.1| (AP001507) multidrug-efflux transporter [Bacillus halodurans]
Length = 387
Score = 74.5 bits (180), Expect = 2e-12
Identities = 79/368 (21%), Positives = 157/368 (42%), Gaps = 24/368 (6%)
Query: 46 PLVPILIVNEGGTPTEIGYTSGLGSLASMIGGVIWGRLSDKLGRRKIFMSLGIFGSTISV 105
P++ ++ G + T +G + SLA+M+G +I G D+ GR+++ + +G+ +
Sbjct: 21 PIITPYALSLGASETLVGGIVAIYSLANMVGNIIGGHWVDRFGRKRM-LYMGMLAVGGVL 79
Query: 106 ILMSVSLSIKSLIFLNILYMFFLAATIPLPISIISREFRKYEINEAIGKFNKLGGWGWVG 165
+L ++ + L F +L+ IP ++I + + + + + G +
Sbjct: 80 LLYPLAQTGGQLFFARLLHGLAGGVLIPAAFALIGDQAKARQSRKPMAFAGASIGIAAIT 139
Query: 166 GLILGFALINFANPRIAILGLGALGILSGILTIKRIKEVPIHPSRFRVN-GIIPSLFTFH 224
G +G L + + + L LS LTIK + E SR RV+ G +
Sbjct: 140 GPAIGGILAAQSRTEYVFILVAILFFLSVGLTIKFVPESMKATSRQRVSWGHV------- 192
Query: 225 PRKITLSTPKLRDEILRIVFISSFLFWIGSMLALTQFPVLAKEKGLDGETLYFVSISSSV 284
P L++ L +++F + + P+L + GL + +
Sbjct: 193 -------GPLLKNVSLMQACLAAFALMVSNGTLAFALPLLVTQLGLTSAATGMLLSIYGI 245
Query: 285 TSALTYQRVANSIVGIGILNYVNGLILRSLGLAGLLFVVPLPSKTFLLASILVYSILGYS 344
T+ + N + Y L++ LGL G+ ++ T LA +L+ + G
Sbjct: 246 TALFIFITPLNKVYE---RLYPGRLVVLGLGLIGVSLMLLSFIHTLSLAVVLMVT-YGIG 301
Query: 345 WAMISISTSSIISARSSENTRGRIFGSYNLVCSSGAIIGSLGSGYLANNIG----MQGDL 400
+A + S + ++S S + RG+ +G + V S G + GS SG + +G + G L
Sbjct: 302 FAFVFPSMNQMVSTASQDEDRGKAYGIFYAVFSLGVVAGSFISGVVTELLGVPFIVSGCL 361
Query: 401 AIGLSLMI 408
+G S+++
Sbjct: 362 MLGCSVLL 369
>pir||G64494 quinolone resistance protein norA homolog - Methanococcus
jannaschii >gi|1592184|gb|AAB99579.1| (U67596)
multidrug-efflux transporter (bmr1) [Methanococcus
jannaschii]
Length = 386
Score = 73.4 bits (177), Expect = 5e-12
Identities = 75/360 (20%), Positives = 156/360 (42%), Gaps = 25/360 (6%)
Query: 42 GGMAPLVPILIVNEGGTPTEIGYTSGLGSLASMIGGVIWGRLSDKLGRRKIFMSLGIFGS 101
G +AP++ I G T EIG G +LA + + G LSD G+ K F+ G F
Sbjct: 23 GFIAPIMAIYAQTLGATNLEIGLIFGSFALARTVAQIPVGVLSDIYGK-KFFIVCGTFFY 81
Query: 102 TISVILMSVSLSIKSLIFLNILYMFFLAATIPLPISIISREFRKYEINEAIGKFNKLGGW 161
+S ++ + ++ + + I F A P+ S I+ K + E +G FN
Sbjct: 82 GVSTLMYNFVSTVLGFLIVRIFTGIFSAFVTPVAGSYIAAIAPKTRLGEYMGIFNSAITL 141
Query: 162 GWVGGLILGFALINFANPRIAILGLGALGILSGILTIKRIKEVPIHPSRFRVN-GIIPSL 220
G+ G +G L + ++ G LGIL+ I++ +++++ + ++ +++ I +L
Sbjct: 142 GFGIGPFIGGILADMYGIKMPFYFCGFLGILAAIISYMKLEDIVFNKNKEKIDVKKISTL 201
Query: 221 FTFHPRKITLSTPKLRDEILRIVFISSFLFWIGSML----ALTQFPVLAKEKGLDGETLY 276
F+F + + F SSF+ + +++ + A + +
Sbjct: 202 FSF-------------EFLKNRNFSSSFIINVSNVMINAGIYAYLALYAINYNITISQVG 248
Query: 277 FVSISSSVTSALTYQRVANSIVGIGILNYVNGLILRSLGLAGLLFVVPLPSKTFLLASIL 336
F+ +++ AL + +G + + G+ + S G+ L + T L +
Sbjct: 249 FMIALTNILMALLQRSFGKLYDKLGNIMIIIGIFIISFGM------YLLSTSTTFLTILA 302
Query: 337 VYSILGYSWAMISISTSSIISARSSENTRGRIFGSYNLVCSSGAIIGSLGSGYLANNIGM 396
+I+ ++ S +T+S+ + +G G + + G IG++ G+LA+ +G+
Sbjct: 303 SLTIIAVGSSISSTATTSLAVKDIPTHRKGEAMGLFTTSINIGMFIGAVSFGFLADILGI 362
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.144 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153695240
Number of Sequences: 2977
Number of extensions: 6472322
Number of successful extensions: 23618
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 23599
Number of HSP's gapped (non-prelim): 11
length of query: 440
length of database: 189,106,746
effective HSP length: 55
effective length of query: 385
effective length of database: 156,189,961
effective search space: 60133134985
effective search space used: 60133134985
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 166 (69.1 bits)