BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0887 (PAB0887) DE:Hypothetical protein
         (144 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75044 hypothetical protein PAB0887 - Pyrococcus abyssi (st...   300  4e-81
pir||C75188 hypothetical protein PAB0019 - Pyrococcus abyssi (st...    92  4e-18

>pir||F75044 hypothetical protein PAB0887 - Pyrococcus abyssi (strain Orsay)
           >gi|5458764|emb|CAB50251.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 144
           
 Score =  300 bits (761), Expect = 4e-81
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MSLCFLFAASTLWEVFRMDMGGMKKVLNELENGRSWVAVTVKTREGPTKVLETFEKYLKD 60
           MSLCFLFAASTLWEVFRMDMGGMKKVLNELENGRSWVAVTVKTREGPTKVLETFEKYLKD
Sbjct: 1   MSLCFLFAASTLWEVFRMDMGGMKKVLNELENGRSWVAVTVKTREGPTKVLETFEKYLKD 60

Query: 61  NGWKPQFKANWWSSNAFGVAMFEAEKGKEHRVVLVKWVVTEKEEVMNVESKDDREGRTEF 120
           NGWKPQFKANWWSSNAFGVAMFEAEKGKEHRVVLVKWVVTEKEEVMNVESKDDREGRTEF
Sbjct: 61  NGWKPQFKANWWSSNAFGVAMFEAEKGKEHRVVLVKWVVTEKEEVMNVESKDDREGRTEF 120

Query: 121 YALVDMISDDLIFDSVLRHMMSRY 144
           YALVDMISDDLIFDSVLRHMMSRY
Sbjct: 121 YALVDMISDDLIFDSVLRHMMSRY 144


>pir||C75188 hypothetical protein PAB0019 - Pyrococcus abyssi (strain Orsay)
           >gi|5457463|emb|CAB48954.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 126
           
 Score = 91.7 bits (224), Expect = 4e-18
 Identities = 40/110 (36%), Positives = 68/110 (61%), Gaps = 1/110 (0%)

Query: 36  WVAVTVKTREGPTKVLETFEKYLKDNGWKPQFKANWWSSNA-FGVAMFEAEKGKEHRVVL 94
           W+ +T KT  GP   +E  E+ +K+ GW+  FKANWW+++  +G+   +A K    +++L
Sbjct: 17  WLILTFKTPYGPLDTMEIIERAVKEAGWEVTFKANWWTADIPYGLVRIDARKNGREKIIL 76

Query: 95  VKWVVTEKEEVMNVESKDDREGRTEFYALVDMISDDLIFDSVLRHMMSRY 144
            +W++ +  EV+ VE+ D  +G+ EF+  VD I+  LI D V+R M  +Y
Sbjct: 77  GRWILGKNLEVIKVENLDLEKGKEEFFRTVDSITSTLIHDPVIRTMREQY 126


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53407314
Number of Sequences: 2977
Number of extensions: 2031586
Number of successful extensions: 5187
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5185
Number of HSP's gapped (non-prelim): 2
length of query: 144
length of database: 189,106,746
effective HSP length: 52
effective length of query: 92
effective length of database: 157,985,422
effective search space: 14534658824
effective search space used: 14534658824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)