BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0896 (PAB0896) DE:Hypothetical protein
         (284 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75045 hypothetical protein PAB0896 - Pyrococcus abyssi (st...   581  e-165
pir||C71136 hypothetical protein PH0855 - Pyrococcus horikoshii ...   154  9e-37

>pir||G75045 hypothetical protein PAB0896 - Pyrococcus abyssi (strain Orsay)
           >gi|5458773|emb|CAB50260.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 284
           
 Score =  581 bits (1481), Expect = e-165
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MNMKIREATLNDAQGITEVHISDVKIPRYEELSVEERYRYGGPWMSVETCAIHINNLLLH 60
           MNMKIREATLNDAQGITEVHISDVKIPRYEELSVEERYRYGGPWMSVETCAIHINNLLLH
Sbjct: 1   MNMKIREATLNDAQGITEVHISDVKIPRYEELSVEERYRYGGPWMSVETCAIHINNLLLH 60

Query: 61  NHPVLVAEENGRILGELEMLISEEMFLGKIRKICHVNVLMVHKDYRGKGIGRALMIEAER 120
           NHPVLVAEENGRILGELEMLISEEMFLGKIRKICHVNVLMVHKDYRGKGIGRALMIEAER
Sbjct: 61  NHPVLVAEENGRILGELEMLISEEMFLGKIRKICHVNVLMVHKDYRGKGIGRALMIEAER 120

Query: 121 VARERGCELITVTPEDRAVGFYKKLGYETLIKEKIFEVKTTKGNANVTKKKFSWEDVRRL 180
           VARERGCELITVTPEDRAVGFYKKLGYETLIKEKIFEVKTTKGNANVTKKKFSWEDVRRL
Sbjct: 121 VARERGCELITVTPEDRAVGFYKKLGYETLIKEKIFEVKTTKGNANVTKKKFSWEDVRRL 180

Query: 181 DIVAGRFQSSYYHWFSNFVDVIHGIDTDRIIETGIVGKSYYILRRLPNGKGAVYVWGRYE 240
           DIVAGRFQSSYYHWFSNFVDVIHGIDTDRIIETGIVGKSYYILRRLPNGKGAVYVWGRYE
Sbjct: 181 DIVAGRFQSSYYHWFSNFVDVIHGIDTDRIIETGIVGKSYYILRRLPNGKGAVYVWGRYE 240

Query: 241 DIPVILKRAGNYFQEIVTCSNIKLGRIIGENVILGKALCSGVAL 284
           DIPVILKRAGNYFQEIVTCSNIKLGRIIGENVILGKALCSGVAL
Sbjct: 241 DIPVILKRAGNYFQEIVTCSNIKLGRIIGENVILGKALCSGVAL 284


>pir||C71136 hypothetical protein PH0855 - Pyrococcus horikoshii
           >gi|3257266|dbj|BAA29949.1| (AP000003) 312aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 312
           
 Score =  154 bits (386), Expect = 9e-37
 Identities = 101/292 (34%), Positives = 162/292 (54%), Gaps = 24/292 (8%)

Query: 1   MNMKIREATLNDAQGITEVHISDVKI-----------PRYEELSVEERYRYGGPWMSVET 49
           M++K+R A+L+D +GI EV+ S V              +Y++L+V ER+ +GGPWMS+ET
Sbjct: 1   MSIKVRIASLDDVKGIVEVYCSSVSKWVKYINGKEVEAKYDDLTVAERWSHGGPWMSIET 60

Query: 50  CAIHINNLLLHNHPVLVAEENGRILGELEMLISEEMFLGKIRKICHVNVLMVHKDYRGKG 109
           CAI+I NLL+++   LVAE NG+I+GELE+ I EE  L  + K  +++VL VHKDYR +G
Sbjct: 61  CAINITNLLINDQYPLVAELNGKIVGELELYIGEEKSL--LGKCGYIDVLEVHKDYRKRG 118

Query: 110 IGRALMIEAERVARERGCELITVTPEDRAVGFYKKLGYETLIKEKI-FEVKTTKGNANV- 167
           +G+AL+ +A  +A+E  C+ + V P   AVGFY+K G   +    +  E+   + +A V 
Sbjct: 119 VGKALVNKAVEIAKEHECDTVAVWPVKEAVGFYRKCGISEIAYRIVHVEINLNEISAKVQ 178

Query: 168 -----TKKKFSWEDVRRLDIVAGRFQSSYYHWFSNFVDVIHGIDTDRIIETGIVGK--SY 220
                T    +++ ++ +  V  R  SS+  W  +     + I+ +R    G + +  + 
Sbjct: 179 EQYSTTSFPNNYDIIKDMTFVTPRIYSSFAAWIKSRWG--YAIEKNRTSIEGCIPELNTC 236

Query: 221 YILRRLPNGKGAVYVWGRYEDIPVILKRAGNYFQEIVTCSNIKLGRIIGENV 272
           YI++ L N K A  ++   EDI  I +     F         +L  +I ENV
Sbjct: 237 YIIKGLWNNKSAAKLFLWVEDIASINQVLNEIFGIAKKKGITRLHLLIDENV 288


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.141    0.420 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107580720
Number of Sequences: 2977
Number of extensions: 4682881
Number of successful extensions: 9908
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9904
Number of HSP's gapped (non-prelim): 2
length of query: 284
length of database: 189,106,746
effective HSP length: 53
effective length of query: 231
effective length of database: 157,386,935
effective search space: 36356381985
effective search space used: 36356381985
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)