BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0897 (PAB0897) DE:Hypothetical protein
         (141 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75045 hypothetical protein PAB0897 - Pyrococcus abyssi (st...   279  1e-74
gi|11498201 conserved hypothetical protein [Archaeoglobus fulgid...    78  4e-14
gi|11499206 conserved hypothetical protein [Archaeoglobus fulgid...    76  2e-13

>pir||H75045 hypothetical protein PAB0897 - Pyrococcus abyssi (strain Orsay)
           >gi|5458774|emb|CAB50261.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 141
           
 Score =  279 bits (705), Expect = 1e-74
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MHYEEVEMLFHRSKDYMSLANVAFKEGKFDVAIFLAGQSLQLYLKATLVKYADLRLRTHS 60
           MHYEEVEMLFHRSKDYMSLANVAFKEGKFDVAIFLAGQSLQLYLKATLVKYADLRLRTHS
Sbjct: 1   MHYEEVEMLFHRSKDYMSLANVAFKEGKFDVAIFLAGQSLQLYLKATLVKYADLRLRTHS 60

Query: 61  IRELLINIGKVFEMEEKVVEFIRSNRLLLRELEDAYIDARYEPRKYSREDAEELIEFANK 120
           IRELLINIGKVFEMEEKVVEFIRSNRLLLRELEDAYIDARYEPRKYSREDAEELIEFANK
Sbjct: 61  IRELLINIGKVFEMEEKVVEFIRSNRLLLRELEDAYIDARYEPRKYSREDAEELIEFANK 120

Query: 121 VMAFVEGLVNEFERRTNRLDD 141
           VMAFVEGLVNEFERRTNRLDD
Sbjct: 121 VMAFVEGLVNEFERRTNRLDD 141


>gi|11498201 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7450150|pir||A69324 conserved hypothetical protein
           AF0593 - Archaeoglobus fulgidus
           >gi|2650031|gb|AAB90648.1| (AE001064) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 128
           
 Score = 78.0 bits (189), Expect = 4e-14
 Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 6/119 (5%)

Query: 7   EMLFHRSKDYMSLANVAFKEGKFDVAIFLAGQSLQLYLKATLVKYADLRLRTHSIRELLI 66
           E L  R+  +M  A    K G +D+  F+A Q++QLYLK+ +++ +    RTHSIR+LL 
Sbjct: 8   EKLRRRAMGFMDAAKERLKVGDYDLTCFMAEQAVQLYLKSVILELSGEVPRTHSIRQLLS 67

Query: 67  NIGKVFEMEEKVVEFIRSNRLLLRELEDAYIDARYEPRKYSREDAEELIEFANKVMAFV 125
            + K+ +      E    +R  L  LEDAYI ARY    Y REDAEE I+ A +V++ V
Sbjct: 68  ILSKLLD------EQFDFDRKQLVFLEDAYIKARYLGAGYEREDAEEAIKIAEEVISAV 120


>gi|11499206 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7450151|pir||E69451 conserved hypothetical protein
           AF1614 - Archaeoglobus fulgidus
           >gi|2648943|gb|AAB89633.1| (AE000991) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 128
           
 Score = 76.1 bits (184), Expect = 2e-13
 Identities = 44/128 (34%), Positives = 70/128 (54%)

Query: 1   MHYEEVEMLFHRSKDYMSLANVAFKEGKFDVAIFLAGQSLQLYLKATLVKYADLRLRTHS 60
           M  EE+E+L  R+  ++  A    + G +D+A F   Q ++LYLK  L K      +T S
Sbjct: 1   MGIEEMEILRERAFKFLKNAEQLIESGVYDIAAFNIQQFVELYLKYALFKKVGDYPKTPS 60

Query: 61  IRELLINIGKVFEMEEKVVEFIRSNRLLLRELEDAYIDARYEPRKYSREDAEELIEFANK 120
           I+ LL  IGK     + V EF+R N   +  +E+AYI +RY P ++ R + E +++ A K
Sbjct: 61  IKRLLREIGKASGKIDAVEEFMRENIDRISNVENAYITSRYIPSEFERIEVENMLKLARK 120

Query: 121 VMAFVEGL 128
           +   V+ L
Sbjct: 121 IRDLVDAL 128


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.139    0.376 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43622777
Number of Sequences: 2977
Number of extensions: 1564831
Number of successful extensions: 4810
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4807
Number of HSP's gapped (non-prelim): 3
length of query: 141
length of database: 189,106,746
effective HSP length: 56
effective length of query: 85
effective length of database: 155,591,474
effective search space: 13225275290
effective search space used: 13225275290
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)