BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0898 (PAB0898) DE:Hypothetical protein
         (122 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75046 hypothetical protein PAB0898 - Pyrococcus abyssi (st...   252  1e-66
pir||A71116 hypothetical protein PH0696 - Pyrococcus horikoshii ...   176  1e-43
gi|11498202 conserved hypothetical protein [Archaeoglobus fulgid...    75  2e-13
gi|11499205 conserved hypothetical protein [Archaeoglobus fulgid...    67  9e-11

>pir||A75046 hypothetical protein PAB0898 - Pyrococcus abyssi (strain Orsay)
           >gi|5458775|emb|CAB50262.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 122
           
 Score =  252 bits (637), Expect = 1e-66
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MNSKEELIDSMIERGRKRYLMIKNYHLYLPAIKEACESIFGNCEIYVFGSVLTGKYTAGS 60
           MNSKEELIDSMIERGRKRYLMIKNYHLYLPAIKEACESIFGNCEIYVFGSVLTGKYTAGS
Sbjct: 1   MNSKEELIDSMIERGRKRYLMIKNYHLYLPAIKEACESIFGNCEIYVFGSVLTGKYTAGS 60

Query: 61  DVDLLIKVPRAPKSLQERAKLKVKIEELAGLPDYHPFGFHIVDEEGFKWYMEKLKVNLKK 120
           DVDLLIKVPRAPKSLQERAKLKVKIEELAGLPDYHPFGFHIVDEEGFKWYMEKLKVNLKK
Sbjct: 61  DVDLLIKVPRAPKSLQERAKLKVKIEELAGLPDYHPFGFHIVDEEGFKWYMEKLKVNLKK 120

Query: 121 IK 122
           IK
Sbjct: 121 IK 122


>pir||A71116 hypothetical protein PH0696 - Pyrococcus horikoshii
           >gi|3257104|dbj|BAA29787.1| (AP000003) 112aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 112
           
 Score =  176 bits (441), Expect = 1e-43
 Identities = 81/109 (74%), Positives = 95/109 (86%)

Query: 7   LIDSMIERGRKRYLMIKNYHLYLPAIKEACESIFGNCEIYVFGSVLTGKYTAGSDVDLLI 66
           ++++ IERGRKR LMIK+YH YL +I+ ACE +F +CE+ VFGSVLTGK+T  SDVDLLI
Sbjct: 1   MLETAIERGRKRCLMIKSYHFYLLSIRRACEKVFDSCEVCVFGSVLTGKFTLESDVDLLI 60

Query: 67  KVPRAPKSLQERAKLKVKIEELAGLPDYHPFGFHIVDEEGFKWYMEKLK 115
           KVP  PKSLQERAK++ KIEELAGLPDYHPF FHIVDEEGFKWY+EKLK
Sbjct: 61  KVPNPPKSLQERAKVEAKIEELAGLPDYHPFKFHIVDEEGFKWYVEKLK 109


>gi|11498202 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7451390|pir||B69324 conserved hypothetical protein
           AF0594 - Archaeoglobus fulgidus
           >gi|2650030|gb|AAB90647.1| (AE001064) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 85
           
 Score = 75.3 bits (182), Expect = 2e-13
 Identities = 36/84 (42%), Positives = 54/84 (63%), Gaps = 1/84 (1%)

Query: 39  IFGNCEIYVFGSVLTGKYTAGSDVDLLIKVPRAP-KSLQERAKLKVKIEELAGLPDYHPF 97
           + G  E+Y+FGSV  GK    SD+D+L+   R   +  +ERA++  +IEE AGLP  HPF
Sbjct: 1   MLGEAEVYLFGSVAEGKAVLSSDIDILVVTTREEVRKARERARIIAEIEERAGLPFVHPF 60

Query: 98  GFHIVDEEGFKWYMEKLKVNLKKI 121
            FHI+DEE F+ ++E  +  + +I
Sbjct: 61  EFHIMDEEEFRVWLEVFRPKIVRI 84


>gi|11499205 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7451391|pir||D69451 conserved hypothetical protein
           AF1613 - Archaeoglobus fulgidus
           >gi|2648944|gb|AAB89634.1| (AE000991) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 113
           
 Score = 66.7 bits (160), Expect = 9e-11
 Identities = 36/107 (33%), Positives = 58/107 (53%), Gaps = 2/107 (1%)

Query: 9   DSMIERGRKRYLMIKNYHLYLPAIKEACESIFGNCEIYVFGSVLTGKYTAGSDVDLLIKV 68
           D  IE  R+     +NY  Y   IK+  + +  + E+YVFGSV+ G++T  +D+D+LI  
Sbjct: 4   DVFIETAREERKYFENYRHYAKIIKKLAKKMLEDAEVYVFGSVVEGRHTPANDIDILIVS 63

Query: 69  PRAPKSLQERAKLKVKIEELAGLPDYHPFGFHIVDEEGFKWYMEKLK 115
              PK  ++RAK+  +I  L  +  + PF  H+   E F+ Y +  K
Sbjct: 64  KHVPKRNEDRAKIVGQI--LKDIDVFAPFEIHLATPELFEIYRKFAK 108


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46500978
Number of Sequences: 2977
Number of extensions: 1803570
Number of successful extensions: 3839
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3836
Number of HSP's gapped (non-prelim): 4
length of query: 122
length of database: 189,106,746
effective HSP length: 51
effective length of query: 71
effective length of database: 158,583,909
effective search space: 11259457539
effective search space used: 11259457539
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)