BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0899 (PAB0899) DE:Hypothetical protein
(128 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75046 hypothetical protein PAB0899 - Pyrococcus abyssi (st... 254 3e-67
pir||C71115 hypothetical protein PH0690 - Pyrococcus horikoshii ... 243 4e-64
gb|AAK42660.1| Conserved hypothetical protein [Sulfolobus solfat... 102 1e-21
gb|AAK41855.1| Conserved hypothetical protein [Sulfolobus solfat... 100 1e-20
gb|AAK41884.1| Conserved hypothetical protein [Sulfolobus solfat... 95 3e-19
pir||A72667 hypothetical protein APE0760 - Aeropyrum pernix (str... 80 7e-15
>pir||B75046 hypothetical protein PAB0899 - Pyrococcus abyssi (strain Orsay)
>gi|5458776|emb|CAB50263.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 128
Score = 254 bits (642), Expect = 3e-67
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MREEARLLWEQALEDLKTAEILIKVKRYYASVFFSQQAAEKALKALYIEIKREFPPKTHS 60
MREEARLLWEQALEDLKTAEILIKVKRYYASVFFSQQAAEKALKALYIEIKREFPPKTHS
Sbjct: 1 MREEARLLWEQALEDLKTAEILIKVKRYYASVFFSQQAAEKALKALYIEIKREFPPKTHS 60
Query: 61 LLRLSSELGIRDEEIIDAVLDLNPEYVVTRYPDAANEVPAKIYNERMAIEHFEKAKKVIE 120
LLRLSSELGIRDEEIIDAVLDLNPEYVVTRYPDAANEVPAKIYNERMAIEHFEKAKKVIE
Sbjct: 61 LLRLSSELGIRDEEIIDAVLDLNPEYVVTRYPDAANEVPAKIYNERMAIEHFEKAKKVIE 120
Query: 121 FCRQRLGL 128
FCRQRLGL
Sbjct: 121 FCRQRLGL 128
>pir||C71115 hypothetical protein PH0690 - Pyrococcus horikoshii
>gi|3257098|dbj|BAA29781.1| (AP000003) 128aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 128
Score = 243 bits (615), Expect = 4e-64
Identities = 118/128 (92%), Positives = 127/128 (99%)
Query: 1 MREEARLLWEQALEDLKTAEILIKVKRYYASVFFSQQAAEKALKALYIEIKREFPPKTHS 60
MREEARLLWEQALEDLKTAE+LI+VKRYYASVFFSQQAAEKALKALYIE+KREFPPKTHS
Sbjct: 1 MREEARLLWEQALEDLKTAEVLIEVKRYYASVFFSQQAAEKALKALYIEVKREFPPKTHS 60
Query: 61 LLRLSSELGIRDEEIIDAVLDLNPEYVVTRYPDAANEVPAKIYNERMAIEHFEKAKKVIE 120
LLRLS+ELGI+DEEIIDAVLDLNPEY+VTRYPDAANEVPAKIYNER+A+EH EKAKKVIE
Sbjct: 61 LLRLSNELGIKDEEIIDAVLDLNPEYIVTRYPDAANEVPAKIYNERIAVEHLEKAKKVIE 120
Query: 121 FCRQRLGL 128
FCRQ+LGL
Sbjct: 121 FCRQKLGL 128
>gb|AAK42660.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 130
Score = 102 bits (252), Expect = 1e-21
Identities = 62/130 (47%), Positives = 82/130 (62%), Gaps = 6/130 (4%)
Query: 1 MREEARLLWEQALEDLKTAEILIKVKRYYASVFFSQQAAEKALKALYIEIKREFPPKTHS 60
MREEA+ + QALEDL TA+ I YYAS F+++QAAEKALKAL IE + +TH
Sbjct: 2 MREEAQKWFRQALEDLATAKDTITTGHYYASAFWAEQAAEKALKALLIENGK--IERTHD 59
Query: 61 LLRL----SSELGIRDEEIIDAVLDLNPEYVVTRYPDAANEVPAKIYNERMAIEHFEKAK 116
L +L E+G+ EEI V L Y ++RYPDAAN +P +Y + A E +KA+
Sbjct: 60 LNQLLYVIKEEIGLPVEEIRSEVNKLTLHYTISRYPDAANTIPYSLYTKEDAEELVKKAE 119
Query: 117 KVIEFCRQRL 126
KVIE+ R+ L
Sbjct: 120 KVIEWVRRNL 129
>gb|AAK41855.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 129
Score = 99.8 bits (245), Expect = 1e-20
Identities = 62/133 (46%), Positives = 82/133 (61%), Gaps = 12/133 (9%)
Query: 1 MREEARLLWEQALEDLKTAEILIKVKRYYASVFFSQQAAEKALKALYI---EIKREFPPK 57
MREEA QALEDL TA+ I YYAS F+++QAAEKALKAL I +I+R
Sbjct: 1 MREEAEKWLRQALEDLATAKDTITTGHYYASAFWAEQAAEKALKALLIAGGKIER----- 55
Query: 58 THSLLRL----SSELGIRDEEIIDAVLDLNPEYVVTRYPDAANEVPAKIYNERMAIEHFE 113
TH L L E+G+ EEI V+ L Y ++RYPDAAN +P +Y++ A E +
Sbjct: 56 THDLNELLEIIKEEIGLSVEEIRSEVIKLTLHYTISRYPDAANTIPYSLYSKEDAEELVK 115
Query: 114 KAKKVIEFCRQRL 126
KA+KVIE+ ++ L
Sbjct: 116 KAEKVIEWVKRNL 128
>gb|AAK41884.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 128
Score = 94.8 bits (232), Expect = 3e-19
Identities = 49/120 (40%), Positives = 83/120 (68%), Gaps = 5/120 (4%)
Query: 11 QALEDLKTAEILIKVKRYYASVFFSQQAAEKALKALYIEIKREFPPKTHSLLRLSSEL-- 68
QA EDL A +L++ +Y+A F+SQQA EKALK+L I + ++ P KTHSL L+S +
Sbjct: 9 QAEEDLDVARVLLEAGKYFAVTFYSQQAVEKALKSLLIHLGKD-PGKTHSLTELASMIEN 67
Query: 69 -GIR-DEEIIDAVLDLNPEYVVTRYPDAANEVPAKIYNERMAIEHFEKAKKVIEFCRQRL 126
G++ + I++ ++ ++P ++++RYPDAAN VPA+ Y + MA + + +AK+V+ + + L
Sbjct: 68 EGLKIPQNIMEDLMVISPHFIISRYPDAANGVPARQYTKNMAEDLYRRAKEVLGWVKGNL 127
>pir||A72667 hypothetical protein APE0760 - Aeropyrum pernix (strain K1)
>gi|5104422|dbj|BAA79737.1| (AP000060) 140aa long
hypothetical protein [Aeropyrum pernix]
Length = 140
Score = 80.4 bits (195), Expect = 7e-15
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 1 MREEARLLWEQALEDLKTAEILIKVKRYYASVFFSQQAAEKALKALYIEIKREFPPKTHS 60
+RE+A L A DL AE +KV A+ F+SQQAAEKALK L + K ++ PKTHS
Sbjct: 6 VREKAWLWLRAARRDLGRAEYSLKVGDRAAATFWSQQAAEKALKGLLLAFKGDY-PKTHS 64
Query: 61 LLRLSSELGI---RDEEIIDAVLDLNPEYVVTRYPDAANEVPAKIYNERMAIEHFEKAKK 117
+ RL +LG+ E ++ +L Y ++RYPD E+P ++ R A A++
Sbjct: 65 IRRLLEDLGLDLGLSEGELEDAFELTQYYYLSRYPDVVEELPDEVIGRRSAERAVNAARR 124
Query: 118 VIEFCRQRL 126
++E + L
Sbjct: 125 IVEAAERAL 133
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.136 0.376
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42816987
Number of Sequences: 2977
Number of extensions: 1455002
Number of successful extensions: 4394
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4387
Number of HSP's gapped (non-prelim): 6
length of query: 128
length of database: 189,106,746
effective HSP length: 56
effective length of query: 72
effective length of database: 155,591,474
effective search space: 11202586128
effective search space used: 11202586128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)