BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0901 1316546 1316962 139 !not a gene!
(139 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (str... 155 1e-37
pir||A71115 hypothetical protein PH0688 - Pyrococcus horikoshii ... 134 3e-31
pir||H72613 hypothetical protein APE1371 - Aeropyrum pernix (str... 122 2e-27
pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (str... 106 9e-23
pir||C71196 hypothetical protein PH1841 - Pyrococcus horikoshii ... 85 4e-16
>pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (strain K1)
>gi|5106180|dbj|BAA81491.1| (AP000064) 353aa long
hypothetical protein [Aeropyrum pernix]
Length = 353
Score = 155 bits (389), Expect = 1e-37
Identities = 85/113 (75%), Positives = 90/113 (79%)
Query: 27 AGSKISGLLVAAITTTPLFSTSPSISVSSWLIILSVTFSPSAVPLAGAIASISSMNIIAG 86
AGS +SGLLVAAITTT S +PSISVSSWL ILSVT P++VPL GA+ASISS N AG
Sbjct: 3 AGSTMSGLLVAAITTTSWRSETPSISVSSWLTILSVTLVPTSVPLTGAMASISSKNTTAG 62
Query: 87 EACLAFLKISLILFSLSPTHLLRTSGPLMAMKFAWLSVATALASKVLPVPGGP 139
CLAF ISLI SLSPTHLL SGPL AMKFA LSVATALAS VLPVPGGP
Sbjct: 63 ACCLAFANISLIALSLSPTHLLSISGPLTAMKFAPLSVATALASSVLPVPGGP 115
Score = 78.4 bits (190), Expect = 3e-14
Identities = 54/103 (52%), Positives = 63/103 (60%), Gaps = 1/103 (0%)
Query: 2 NISNLAFSSGAGTRISLSKRPGLNNAGSKISGLLVAAITTTPLFSTSPSISVSSWLIILS 61
+IS+L SG GT ISLS PGL AGS GLLVAA+T T ++SPS+ S L
Sbjct: 252 SISSLPCLSGKGTSISLSNLPGLLRAGSMALGLLVAAMTITLPLASSPSMRARSCATTLL 311
Query: 62 VTFSPSAVPLAGAIASISSMNIIAGEACLAFLKISLILFSLSP 104
T SP+ L GA+ASISSM I+ G LA KISL SLSP
Sbjct: 312 ST-SPTTSSLFGAMASISSMKIMLGAFFLASSKISLSRCSLSP 353
>pir||A71115 hypothetical protein PH0688 - Pyrococcus horikoshii
>gi|3257096|dbj|BAA29779.1| (AP000003) 146aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 146
Score = 134 bits (335), Expect = 3e-31
Identities = 71/82 (86%), Positives = 74/82 (89%)
Query: 58 IILSVTFSPSAVPLAGAIASISSMNIIAGEACLAFLKISLILFSLSPTHLLRTSGPLMAM 117
+ILSVTFSPS VPLAGAIASISS+ IIAG ACLAFLKISLILFSLSPTHLL TSGPL AM
Sbjct: 1 MILSVTFSPSEVPLAGAIASISSIKIIAGAACLAFLKISLILFSLSPTHLLNTSGPLTAM 60
Query: 118 KFAWLSVATALASKVLPVPGGP 139
K A LSVATALA +VLPVPGGP
Sbjct: 61 KLASLSVATALAKRVLPVPGGP 82
>pir||H72613 hypothetical protein APE1371 - Aeropyrum pernix (strain K1)
>gi|5105052|dbj|BAA80366.1| (AP000061) 159aa long
hypothetical protein [Aeropyrum pernix]
Length = 159
Score = 122 bits (303), Expect = 2e-27
Identities = 72/110 (65%), Positives = 76/110 (68%), Gaps = 1/110 (0%)
Query: 31 ISGLLVAAITTTPLFSTSPSISVSSWLIILSVT-FSPSAVPLAGAIASISSMNIIAGEAC 89
+SGL VA +TTT PSIS S W ILSVT + PLAGA+ASISS N AG AC
Sbjct: 1 MSGLFVAPMTTTFESGCIPSISASIWFTILSVTPLVSNLAPLAGAMASISSKNTTAGAAC 60
Query: 90 LAFLKISLILFSLSPTHLLRTSGPLMAMKFAWLSVATALASKVLPVPGGP 139
LA KI I SLSPTHLL SGPL AMKFA LSVATALA VLPVPGGP
Sbjct: 61 LALSKIFRIALSLSPTHLLSISGPLTAMKFAPLSVATALARSVLPVPGGP 110
>pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (strain K1)
>gi|5105712|dbj|BAA81024.1| (AP000063) 280aa long
hypothetical protein [Aeropyrum pernix]
Length = 280
Score = 106 bits (263), Expect = 9e-23
Identities = 70/141 (49%), Positives = 85/141 (59%), Gaps = 4/141 (2%)
Query: 2 NISNLAFSSGAGTRISLSKRPGLNNAGSKISGLLVAAITTTPLFSTSPSISVSSWLIILS 61
+IS+L G GT I LS PGL AGS S LLVAA+T T + PS S SW ++L
Sbjct: 23 SISSLPRRLGRGTSIILSNLPGLRTAGSMRSSLLVAAMTFTLSRGSKPSSSARSWSMVLC 82
Query: 62 VTFSPSAVPLA---GAIASISSMNIIAGEACLAFLKISLILFSLSPTHLLRTSGPLMAMK 118
+ SP VP++ A+ASISSMN I G LA L ISL + SP +LL +S P M
Sbjct: 83 TSLSP-LVPMSTLLDAMASISSMNSIEGAFSLASLNISLTSLAPSPMNLLTSSLPTTLMN 141
Query: 119 FAWLSVATALASKVLPVPGGP 139
A +S ATALA +V PVPGGP
Sbjct: 142 VASVSPATALARRVFPVPGGP 162
>pir||C71196 hypothetical protein PH1841 - Pyrococcus horikoshii
>gi|3258279|dbj|BAA30962.1| (AP000007) 141aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 141
Score = 84.7 bits (206), Expect = 4e-16
Identities = 59/103 (57%), Positives = 61/103 (58%), Gaps = 1/103 (0%)
Query: 2 NISNLAFSSGAGTRISLSKRPGLNNAGSKISGLLVAAITTTPLFSTSPSISVSSWLIILS 61
+IS L SG T ISLSKRPGL AGSK SGLLVA IT T PSI SSW L
Sbjct: 40 SISFLPCLSGTPTSISLSKRPGLLKAGSKASGLLVAPITITLPLPFKPSIKASSWATTLF 99
Query: 62 VTFSPSAVPLAGAIASISSMNIIAGEACLAFLKISLILFSLSP 104
T SP L GAIASISS+ II G A L SL L SLSP
Sbjct: 100 ST-SPVTSLLFGAIASISSIKIIDGAFSSASLNTSLNLSSLSP 141
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.131 0.367
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47897819
Number of Sequences: 2977
Number of extensions: 1683228
Number of successful extensions: 4481
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4473
Number of HSP's gapped (non-prelim): 6
length of query: 139
length of database: 189,106,746
effective HSP length: 57
effective length of query: 82
effective length of database: 154,992,987
effective search space: 12709424934
effective search space used: 12709424934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)