BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0902 1317365 1317862 166 !not a gene!
         (166 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71196 hypothetical protein PH1841 - Pyrococcus horikoshii ...   189  1e-47
pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (str...   149  2e-35
pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (str...    90  1e-17

>pir||C71196 hypothetical protein PH1841 - Pyrococcus horikoshii
           >gi|3258279|dbj|BAA30962.1| (AP000007) 141aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 141
           
 Score =  189 bits (476), Expect = 1e-47
 Identities = 104/133 (78%), Positives = 109/133 (81%)

Query: 34  NLSSFSSSFKALITVSFSKSGSIGIPLVCIWRISFLPCLSGTPTSISLSNLPGLLKAGSS 93
           N  SF S  + L T SF KSGSIGIPLV I  ISFLPCLSGTPTSISLS  PGLLKAGS 
Sbjct: 9   NFPSFLSPSRILSTSSFLKSGSIGIPLVWICSISFLPCLSGTPTSISLSKRPGLLKAGSK 68

Query: 94  ASGLLVAAITITLPLLLRPSIRVNSWLTTLFSTSPTTSSLFGAIASISSMKIIAGAFSSA 153
           ASGLLVA ITITLPL  +PSI+ +SW TTLFSTSP TS LFGAIASISS+KII GAFSSA
Sbjct: 69  ASGLLVAPITITLPLPFKPSIKASSWATTLFSTSPVTSLLFGAIASISSIKIIDGAFSSA 128

Query: 154 SLNISLNLSSLSP 166
           SLN SLNLSSLSP
Sbjct: 129 SLNTSLNLSSLSP 141


>pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (strain K1)
           >gi|5106180|dbj|BAA81491.1| (AP000064) 353aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 353
           
 Score =  149 bits (372), Expect = 2e-35
 Identities = 89/142 (62%), Positives = 103/142 (71%), Gaps = 2/142 (1%)

Query: 27  FLIFSLSNLSSFSSSFKALITVSFSKSGSI--GIPLVCIWRISFLPCLSGTPTSISLSNL 84
           ++  SL+  +  +     +I+ SFS+S S   GI LVCI  IS LPCLSG  TSISLSNL
Sbjct: 212 YMAASLARAARSAPVKPLVISASFSRSMSSARGICLVCICSISSLPCLSGKGTSISLSNL 271

Query: 85  PGLLKAGSSASGLLVAAITITLPLLLRPSIRVNSWLTTLFSTSPTTSSLFGAIASISSMK 144
           PGLL+AGS A GLLVAA+TITLPL   PS+R  S  TTL STSPTTSSLFGA+ASISSMK
Sbjct: 272 PGLLRAGSMALGLLVAAMTITLPLASSPSMRARSCATTLLSTSPTTSSLFGAMASISSMK 331

Query: 145 IIAGAFSSASLNISLNLSSLSP 166
           I+ GAF  AS  ISL+  SLSP
Sbjct: 332 IMLGAFFLASSKISLSRCSLSP 353


>pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (strain K1)
           >gi|5105712|dbj|BAA81024.1| (AP000063) 280aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 280
           
 Score = 90.1 bits (220), Expect = 1e-17
 Identities = 65/126 (51%), Positives = 73/126 (57%), Gaps = 3/126 (2%)

Query: 44  ALITVSFSKSGSIGIPLVCIWRISFLPCLSGTPTSISLSNLPGLLKAGSSASGLLVAAIT 103
           +L   S S SG+I   LV +  IS LP   G  TSI LSNLPGL  AGS  S LLVAA+T
Sbjct: 2   SLAIASRSTSGAIFAFLVWMPSISSLPRRLGRGTSIILSNLPGLRTAGSMRSSLLVAAMT 61

Query: 104 ITLPLLLRPSIRVNSW---LTTLFSTSPTTSSLFGAIASISSMKIIAGAFSSASLNISLN 160
            TL    +PS    SW   L T  S     S+L  A+ASISSM  I GAFS ASLNISL 
Sbjct: 62  FTLSRGSKPSSSARSWSMVLCTSLSPLVPMSTLLDAMASISSMNSIEGAFSLASLNISLT 121

Query: 161 LSSLSP 166
             + SP
Sbjct: 122 SLAPSP 127


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.132    0.360 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51125699
Number of Sequences: 2977
Number of extensions: 1984496
Number of successful extensions: 10060
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10055
Number of HSP's gapped (non-prelim): 4
length of query: 166
length of database: 189,106,746
effective HSP length: 59
effective length of query: 107
effective length of database: 153,796,013
effective search space: 16456173391
effective search space used: 16456173391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)