BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0908 (acaC) DE:acaC protein
(134 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75047 acac protein PAB0908 - Pyrococcus abyssi (strain Ors... 289 1e-77
pir||D71113 hypothetical protein PH0675 - Pyrococcus horikoshii ... 272 2e-72
pir||T45080 hypothetical protein acaC [imported] - Pyrococcus fu... 268 2e-71
pir||G64493 hypothetical protein homolog MJ1552 - Methanococcus ... 133 1e-30
gb|AAB99572.1| (U67596) conserved hypothetical protein [Methanoc... 133 1e-30
pir||A69053 conserved hypothetical protein MTH1398 - Methanobact... 130 7e-30
emb|CAC12577.1| (AL445067) conserved hypothetical protein [Therm... 120 8e-27
pir||G72573 hypothetical protein APE1871 - Aeropyrum pernix (str... 97 1e-19
gb|AAK40852.1| Conserved hypothetical protein [Sulfolobus solfat... 94 7e-19
emb|CAB57767.1| (Y18930) hypothetical protein [Sulfolobus solfat... 94 7e-19
gi|11499993 conserved hypothetical protein [Archaeoglobus fulgid... 91 6e-18
gb|AAB48107.1| (U41818) PhlB [Pseudomonas fluorescens] 70 1e-11
gi|11497900 conserved hypothetical protein [Archaeoglobus fulgid... 69 2e-11
>pir||G75047 acac protein PAB0908 - Pyrococcus abyssi (strain Orsay)
>gi|5458789|emb|CAB50276.1| (AJ248287) acaC protein
[Pyrococcus abyssi]
Length = 134
Score = 289 bits (731), Expect = 1e-77
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MGRPMQVSRYWRHFREKYRLIGGKCENGHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITW 60
MGRPMQVSRYWRHFREKYRLIGGKCENGHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITW
Sbjct: 1 MGRPMQVSRYWRHFREKYRLIGGKCENGHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITW 60
Query: 61 TIVRNPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEED 120
TIVRNPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEED
Sbjct: 61 TIVRNPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEED 120
Query: 121 GIILYGYKFRPKLK 134
GIILYGYKFRPKLK
Sbjct: 121 GIILYGYKFRPKLK 134
>pir||D71113 hypothetical protein PH0675 - Pyrococcus horikoshii
>gi|3257083|dbj|BAA29766.1| (AP000003) 134aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 134
Score = 272 bits (687), Expect = 2e-72
Identities = 124/134 (92%), Positives = 130/134 (96%)
Query: 1 MGRPMQVSRYWRHFREKYRLIGGKCENGHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITW 60
MG+PMQVSRYWRHF+EKYRLIGGKCENGHVFFPKRPVCP+CGSRNVE+FEFSG+GKVITW
Sbjct: 1 MGKPMQVSRYWRHFKEKYRLIGGKCENGHVFFPKRPVCPICGSRNVEDFEFSGKGKVITW 60
Query: 61 TIVRNPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEED 120
TIVRNPPSGFEYYKPYPIALIQLEEGP+VLAQLTDVEPDEI EGMEVEMVTRKI EF ED
Sbjct: 61 TIVRNPPSGFEYYKPYPIALIQLEEGPIVLAQLTDVEPDEIKEGMEVEMVTRKIVEFNED 120
Query: 121 GIILYGYKFRPKLK 134
GIILYGYKFRP LK
Sbjct: 121 GIILYGYKFRPILK 134
>pir||T45080 hypothetical protein acaC [imported] - Pyrococcus furiosus
>gi|1197355|emb|CAA59497.1| (X85250) unknown protein in
aca operon [Pyrococcus furiosus]
Length = 136
Score = 268 bits (679), Expect = 2e-71
Identities = 118/134 (88%), Positives = 131/134 (97%)
Query: 1 MGRPMQVSRYWRHFREKYRLIGGKCENGHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITW 60
MG+PMQVSRYWRHFREKYRLIGGKCENGH+ FPKRP+CP+CGSRN+EEF+FSG+GKVITW
Sbjct: 1 MGKPMQVSRYWRHFREKYRLIGGKCENGHLLFPKRPICPICGSRNIEEFQFSGKGKVITW 60
Query: 61 TIVRNPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEED 120
TIVRNPPSGFEYYKPYP+AL+QLEEGPVVLAQLTDVEP+EI EGMEVEMVTRKIREF+ED
Sbjct: 61 TIVRNPPSGFEYYKPYPLALVQLEEGPVVLAQLTDVEPEEIKEGMEVEMVTRKIREFDED 120
Query: 121 GIILYGYKFRPKLK 134
G+ILYGYKFRP +K
Sbjct: 121 GLILYGYKFRPIIK 134
>pir||G64493 hypothetical protein homolog MJ1552 - Methanococcus jannaschii
Length = 142
Score = 133 bits (331), Expect = 1e-30
Identities = 62/131 (47%), Positives = 89/131 (67%), Gaps = 2/131 (1%)
Query: 3 RPMQVSRYWRHFREKYRLIGGKCEN-GHVFFPKRPVCPVCGSRN-VEEFEFSGRGKVITW 60
R V R WRH +E+Y LIG +C+N G V+FP R +CP C + EE + SG+GKV T+
Sbjct: 9 RDKMVVRSWRHIKERYCLIGVRCKNCGTVYFPSREICPKCRRKTEFEEIKLSGKGKVYTY 68
Query: 61 TIVRNPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEED 120
++V P FE PY IA+I+LEEG + Q+ D +P++++ GM+VE V R+I+E +D
Sbjct: 69 SVVHVAPKDFEKQAPYVIAIIELEEGARITGQIVDCKPEDVYIGMQVEAVFRRIKEDGDD 128
Query: 121 GIILYGYKFRP 131
G+I YGYKF+P
Sbjct: 129 GVITYGYKFKP 139
>gb|AAB99572.1| (U67596) conserved hypothetical protein [Methanococcus jannaschii]
Length = 141
Score = 133 bits (331), Expect = 1e-30
Identities = 62/131 (47%), Positives = 89/131 (67%), Gaps = 2/131 (1%)
Query: 3 RPMQVSRYWRHFREKYRLIGGKCEN-GHVFFPKRPVCPVCGSRN-VEEFEFSGRGKVITW 60
R V R WRH +E+Y LIG +C+N G V+FP R +CP C + EE + SG+GKV T+
Sbjct: 8 RDKMVVRSWRHIKERYCLIGVRCKNCGTVYFPSREICPKCRRKTEFEEIKLSGKGKVYTY 67
Query: 61 TIVRNPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEED 120
++V P FE PY IA+I+LEEG + Q+ D +P++++ GM+VE V R+I+E +D
Sbjct: 68 SVVHVAPKDFEKQAPYVIAIIELEEGARITGQIVDCKPEDVYIGMQVEAVFRRIKEDGDD 127
Query: 121 GIILYGYKFRP 131
G+I YGYKF+P
Sbjct: 128 GVITYGYKFKP 138
>pir||A69053 conserved hypothetical protein MTH1398 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622509|gb|AAB85875.1| (AE000902) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 133
Score = 130 bits (324), Expect = 7e-30
Identities = 59/126 (46%), Positives = 87/126 (68%), Gaps = 2/126 (1%)
Query: 9 RYWRHFREKYRLIGGKC-ENGHVFFPKRPVCPVCGSRN-VEEFEFSGRGKVITWTIVRNP 66
R WRH ++Y L G KC + G+VFFP R +CP C + +EE +FSG+G++ +++++ P
Sbjct: 7 RTWRHIPQRYNLTGSKCLQCGNVFFPSRIICPECRRKGKLEELKFSGKGRIHSYSVINTP 66
Query: 67 PSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEEDGIILYG 126
F+ PY +A+++LEEG V +Q+ D +PD I G EVEMV RK+RE EDG+I YG
Sbjct: 67 TDEFKDIAPYVVAIVELEEGARVTSQIVDCDPDSIEIGDEVEMVFRKVREEGEDGVISYG 126
Query: 127 YKFRPK 132
+KF+PK
Sbjct: 127 FKFKPK 132
>emb|CAC12577.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 135
Score = 120 bits (298), Expect = 8e-27
Identities = 56/128 (43%), Positives = 81/128 (62%), Gaps = 4/128 (3%)
Query: 6 QVSRYWRHFREKYRLIGGKCEN-GHVFFPKRPVCPVCGSRNV---EEFEFSGRGKVITWT 61
Q+SR+WR +YRL+G +CEN G V+FP R VCP C ++ ++ E SG G + ++T
Sbjct: 5 QLSRFWRESEHRYRLMGTRCENCGRVYFPPREVCPTCHRESIGKMKDLELSGEGVIESFT 64
Query: 62 IVRNPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEEDG 121
IV P F KPY +ALI+ EEGP++ Q+ D +P E+ G V V R++ E + G
Sbjct: 65 IVHEAPPRFSRQKPYVLALIKTEEGPMITGQIVDCDPSEVEIGKRVHAVFRRMGEDGDTG 124
Query: 122 IILYGYKF 129
+I+YGYKF
Sbjct: 125 VIVYGYKF 132
>pir||G72573 hypothetical protein APE1871 - Aeropyrum pernix (strain K1)
>gi|5105563|dbj|BAA80876.1| (AP000062) 136aa long
hypothetical protein [Aeropyrum pernix]
Length = 136
Score = 96.7 bits (237), Expect = 1e-19
Identities = 51/126 (40%), Positives = 76/126 (59%), Gaps = 3/126 (2%)
Query: 9 RYWRHFREKYRLIGGKCEN-GHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITWTIVRNPP 67
R WR +YRL+GG+C + G F+P CP CGSRNV E E G++ +T++ +
Sbjct: 11 REWRTRVPRYRLLGGRCSDCGRSFYPPAKACPYCGSRNVAETELPRVGRLEAYTVLYSVE 70
Query: 68 SGFEYYKPYPIALIQLEEGPVVLAQLTDV-EPDEIHEGMEVEMVTRKIREFEEDGIILYG 126
SG P I L+ L VV +++ DV +P+ + G++VE V R+I E ++G+I+YG
Sbjct: 71 SGARDRSPVVIGLVDLGVAKVV-SEIVDVSDPESLERGVQVEAVFRRIYEDGDEGVIVYG 129
Query: 127 YKFRPK 132
KFRPK
Sbjct: 130 VKFRPK 135
>gb|AAK40852.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 133
Score = 94.0 bits (230), Expect = 7e-19
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 11 WRHFREKYRLIGGKCEN-GHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITWTIVRNPPSG 69
WR+ R Y+L +CE GH+ FP C CGS+NV++ E SG+G + ++T+ G
Sbjct: 9 WRNKRFMYKLTASRCERCGHISFPYSSYCTKCGSKNVKKIEISGKGVLESYTVSYQSRDG 68
Query: 70 FEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEEDGIILYGYKF 129
E P I L++L+EG ++A + D + D++ EG++VE R++ +G+I YG KF
Sbjct: 69 HEKGLPSVIGLVRLDEGVEIVAPIVDADLDKLKEGVKVEATLRRVYTDSYNGLIQYGIKF 128
Query: 130 R 130
R
Sbjct: 129 R 129
>emb|CAB57767.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 133
Score = 94.0 bits (230), Expect = 7e-19
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 11 WRHFREKYRLIGGKCEN-GHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITWTIVRNPPSG 69
WR+ R Y+L +CE GH+ FP C CGS+NV++ E SG+G + ++T+ G
Sbjct: 9 WRNKRFMYKLTASRCERCGHISFPYSSYCTKCGSKNVKKIEISGKGVLESYTVSYQSRDG 68
Query: 70 FEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEEDGIILYGYKF 129
E P I L++L+EG ++A + D + D++ EG++VE R++ +G+I YG KF
Sbjct: 69 HEKGLPSVIGLVRLDEGVEIVAPIVDADLDKLKEGVKVEATLRRVYTDSYNGLIQYGIKF 128
Query: 130 R 130
R
Sbjct: 129 R 129
>gi|11499993 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430220|pir||B69552 conserved hypothetical protein
AF2417 - Archaeoglobus fulgidus
>gi|2650672|gb|AAB91245.1| (AE001108) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 122
Score = 90.9 bits (222), Expect = 6e-18
Identities = 54/127 (42%), Positives = 71/127 (55%), Gaps = 10/127 (7%)
Query: 7 VSRYWRHFREKYRLIGGKCEN-GHVFFPKRPVCPVCGSRN-VEEFEFSGRGKVITWTIVR 64
V R WR R +Y + G CEN G +P R CP C R + E F GKV+++T+VR
Sbjct: 2 VPRSWRKIRYRYDVRGSYCENCGSYHYPPRNFCPTCRRRGKLVEVLFPDEGKVVSYTVVR 61
Query: 65 NPPSGFEYYKPYPIALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEEDGIIL 124
+PY +ALI+LE G +L+QL+ EPDE+ GM V R+ E E+GII
Sbjct: 62 EK-------EPYVVALIELENGARILSQLS-CEPDEVEIGMRVRRAFRRYGEDGEEGIIH 113
Query: 125 YGYKFRP 131
YG KF P
Sbjct: 114 YGTKFVP 120
>gb|AAB48107.1| (U41818) PhlB [Pseudomonas fluorescens]
Length = 146
Score = 69.9 bits (168), Expect = 1e-11
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 9 RYWRHFREKYRLIGGKCEN-GHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITWTIVRNP- 66
R WR KYRL G +C++ +FFP+R VC C S NVE + + G + NP
Sbjct: 18 REWREHGGKYRLEGSRCQDCEEIFFPRRTVCGACNSLNVEPYRCARTGTIQVSAHAENPI 77
Query: 67 --PSGFEYYKPYPIALIQLEEGPVVLAQLTD-VEPDEIHEGMEVEMVTRKIREFEEDGII 123
G+ P +A+++L++G V+ +++ D V+P ++ G V MV RK E +
Sbjct: 78 LAAMGYGETVPRFMAMVRLDDGLVIASEIVDVVDPRQVVTGAPVRMVIRK-HVRESNLAW 136
Query: 124 LYGYKF 129
Y YKF
Sbjct: 137 QYAYKF 142
>gi|11497900 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430224|pir||D69285 conserved hypothetical protein
AF0284 - Archaeoglobus fulgidus
>gi|2650352|gb|AAB90949.1| (AE001085) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 165
Score = 69.1 bits (166), Expect = 2e-11
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 19 RLIGGKCEN-GHVFFPKRPVCPVCGSRNVEEFEFSGRGKVITWTIVRNPPSGFEYYKPYP 77
+L+G KC+ G +FFP + CP C ++E E G + T T+V P F Y PYP
Sbjct: 58 KLLGTKCKKCGRLFFPPQKDCPSCFDSDIEWVELKNEGTLETMTVVFVRPPSFSAYDPYP 117
Query: 78 IALIQLEEGPVVLAQLTDVEPDEIHEGMEVEMVTRKIREFEEDGIILY 125
+A+ +L++GP +LA +P + GM V++ K +E G ++Y
Sbjct: 118 VAIAKLDDGPRILAWYKG-DPQQAKPGMRVKIQVGKRKE----GYLMY 160
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.145 0.459
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56930678
Number of Sequences: 2977
Number of extensions: 2394207
Number of successful extensions: 4453
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4427
Number of HSP's gapped (non-prelim): 13
length of query: 134
length of database: 189,106,746
effective HSP length: 46
effective length of query: 88
effective length of database: 161,576,344
effective search space: 14218718272
effective search space used: 14218718272
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)