BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0909 (vhtD) DE:F420-nonreducing hydrogenase (vhtD)
         (149 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75047 f420-nonreducing hydrogenase (vhtd) PAB0909 - Pyroco...   287  3e-77
pir||C71113 probable frxA protein - Pyrococcus horikoshii >gi|32...   208  3e-53
pir||T45079 hypothetical protein frxA [imported] - Pyrococcus fu...   192  2e-48

>pir||H75047 f420-nonreducing hydrogenase (vhtd) PAB0909 - Pyrococcus abyssi
           (strain Orsay) >gi|5458790|emb|CAB50277.1| (AJ248287)
           F420-nonreducing hydrogenase (vhtD) [Pyrococcus abyssi]
           Length = 149
           
 Score =  287 bits (728), Expect = 3e-77
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MTALIVALGNEVMGDDGAGIKVARILKNKGYRVEILGTDIFSLQQRYNGEDKVIIVDAVL 60
           MTALIVALGNEVMGDDGAGIKVARILKNKGYRVEILGTDIFSLQQRYNGEDKVIIVDAVL
Sbjct: 1   MTALIVALGNEVMGDDGAGIKVARILKNKGYRVEILGTDIFSLQQRYNGEDKVIIVDAVL 60

Query: 61  SNDAGKVIHLKDEEIFQKLKAEIRSAHFMGAIESLKLLMTLDERLKNAKFHFVGITIKRI 120
           SNDAGKVIHLKDEEIFQKLKAEIRSAHFMGAIESLKLLMTLDERLKNAKFHFVGITIKRI
Sbjct: 61  SNDAGKVIHLKDEEIFQKLKAEIRSAHFMGAIESLKLLMTLDERLKNAKFHFVGITIKRI 120

Query: 121 ELGLELSEEVERAIPRAIEIIESIVGDDE 149
           ELGLELSEEVERAIPRAIEIIESIVGDDE
Sbjct: 121 ELGLELSEEVERAIPRAIEIIESIVGDDE 149


>pir||C71113 probable frxA protein - Pyrococcus horikoshii
           >gi|3257082|dbj|BAA29765.1| (AP000003) 151aa long
           hypothetical frxA protein [Pyrococcus horikoshii]
           Length = 151
           
 Score =  208 bits (523), Expect = 3e-53
 Identities = 103/146 (70%), Positives = 125/146 (85%), Gaps = 2/146 (1%)

Query: 1   MTALIVALGNEVMGDDGAGIKVARILKNKGYRVEILGTDIFSLQQRYNGEDKVIIVDAVL 60
           M+ LIV LGNEVMGDDG GIKV +ILK +GYRVE LGTD+F LQ+RY GED+VIIVDA+L
Sbjct: 1   MSVLIVTLGNEVMGDDGVGIKVGKILKERGYRVEELGTDVFLLQRRYKGEDRVIIVDAIL 60

Query: 61  SNDAGKVIHLKDEEIFQKLKAEIRSAHFMGAIESLKLLMTLDERLKNAKFHFVGITIK-- 118
           S+++GKV+HLK EEIFQKLKAEIRSAHFMGAIE L+LL+ LDERL+ A+ HF+GITI+  
Sbjct: 61  SDESGKVVHLKGEEIFQKLKAEIRSAHFMGAIEGLRLLIELDERLRRAELHFIGITIREE 120

Query: 119 RIELGLELSEEVERAIPRAIEIIESI 144
            I+  LELSEE  +AIP+A+E+IE I
Sbjct: 121 NIKPNLELSEEARKAIPKALEVIERI 146


>pir||T45079 hypothetical protein frxA [imported] - Pyrococcus furiosus
           >gi|1197354|emb|CAA59496.1| (X85250) frxA [Pyrococcus
           furiosus]
           Length = 137
           
 Score =  192 bits (482), Expect = 2e-48
 Identities = 95/137 (69%), Positives = 116/137 (84%)

Query: 13  MGDDGAGIKVARILKNKGYRVEILGTDIFSLQQRYNGEDKVIIVDAVLSNDAGKVIHLKD 72
           MGDDG GIK+ R LK +GY+VE LGTDIFSL + YNGE+KVIIVDAVL    GKV++ K 
Sbjct: 1   MGDDGVGIKIGRELKRQGYKVEELGTDIFSLMRVYNGENKVIIVDAVLGEIPGKVVYFKG 60

Query: 73  EEIFQKLKAEIRSAHFMGAIESLKLLMTLDERLKNAKFHFVGITIKRIELGLELSEEVER 132
           E+IF+KL+AEIRSAHFMGA+E LKLL+ +DERLKNA+ HFVG+TIK  +LGLELSEEV+R
Sbjct: 61  EDIFKKLRAEIRSAHFMGAVEGLKLLLEVDERLKNAELHFVGVTIKEPKLGLELSEEVKR 120

Query: 133 AIPRAIEIIESIVGDDE 149
           AIPRA+E+I SI+ + E
Sbjct: 121 AIPRAMELILSIIREGE 137


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.372 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48918213
Number of Sequences: 2977
Number of extensions: 1834507
Number of successful extensions: 5252
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5248
Number of HSP's gapped (non-prelim): 3
length of query: 149
length of database: 189,106,746
effective HSP length: 57
effective length of query: 92
effective length of database: 154,992,987
effective search space: 14259354804
effective search space used: 14259354804
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)