BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0910 (PAB0910) DE:Hypothetical protein
(196 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75048 hypothetical protein PAB0910 - Pyrococcus abyssi (st... 380 e-105
pir||B71113 hypothetical protein PH0673 - Pyrococcus horikoshii ... 301 5e-81
dbj|BAA35588.1| (D90724) Hypothetical protein HI1452 [Escherichi... 118 6e-26
sp|P75826|YBJE_ECOLI HYPOTHETICAL 34.4 KD PROTEIN IN POXB-AQPZ I... 118 6e-26
pir||E72627 hypothetical protein APE1477 - Aeropyrum pernix (str... 115 4e-25
sp|P44201|YBJE_HAEIN HYPOTHETICAL PROTEIN HI1452 >gi|1074785|pir... 104 1e-21
gb|AAK42350.1| Conserved hypothetical protein [Sulfolobus solfat... 100 2e-20
pir||B82235 conserved hypothetical protein VC1151 [imported] - V... 98 1e-19
pir||G81069 conserved hypothetical protein NMB1562 [imported] - ... 87 1e-16
pir||F81799 hypothetical integral membrane protein NMA1750 [impo... 86 3e-16
>pir||B75048 hypothetical protein PAB0910 - Pyrococcus abyssi (strain Orsay)
>gi|5458792|emb|CAB50279.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 196
Score = 380 bits (966), Expect = e-105
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MKFTVIILLALSLGFILGKLGFDPGNSYELALYALIFVIGLDLGANAKAEEVKKAISHKT 60
MKFTVIILLALSLGFILGKLGFDPGNSYELALYALIFVIGLDLGANAKAEEVKKAISHKT
Sbjct: 1 MKFTVIILLALSLGFILGKLGFDPGNSYELALYALIFVIGLDLGANAKAEEVKKAISHKT 60
Query: 61 LALPIATLLGSIIGGIVSSFIVGLPLKWALTISAGVGWYSLTGAILTQYSPVYGVIGFLA 120
LALPIATLLGSIIGGIVSSFIVGLPLKWALTISAGVGWYSLTGAILTQYSPVYGVIGFLA
Sbjct: 61 LALPIATLLGSIIGGIVSSFIVGLPLKWALTISAGVGWYSLTGAILTQYSPVYGVIGFLA 120
Query: 121 NFIREVITVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLS 180
NFIREVITVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLS
Sbjct: 121 NFIREVITVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLS 180
Query: 181 LLVPILVPTLASMGGD 196
LLVPILVPTLASMGGD
Sbjct: 181 LLVPILVPTLASMGGD 196
>pir||B71113 hypothetical protein PH0673 - Pyrococcus horikoshii
>gi|3257081|dbj|BAA29764.1| (AP000003) 199aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 199
Score = 301 bits (762), Expect = 5e-81
Identities = 139/192 (72%), Positives = 172/192 (89%)
Query: 1 MKFTVIILLALSLGFILGKLGFDPGNSYELALYALIFVIGLDLGANAKAEEVKKAISHKT 60
+KFT+++L++LS+GFILGKLG +PGNSYE++LY LIF+IGLDLG N K ++ KK +SHKT
Sbjct: 6 VKFTILVLISLSIGFILGKLGINPGNSYEVSLYILIFIIGLDLGLNTKIKDFKKVLSHKT 65
Query: 61 LALPIATLLGSIIGGIVSSFIVGLPLKWALTISAGVGWYSLTGAILTQYSPVYGVIGFLA 120
+ALP +TL+GSIIGG ++S ++ +PLKW+L ISAGVGWYSLTGAIL QYSP+YGVIGFL
Sbjct: 66 IALPFSTLIGSIIGGALASLVIDIPLKWSLAISAGVGWYSLTGAILAQYSPIYGVIGFLT 125
Query: 121 NFIREVITVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLS 180
NFIREV TV +YP+LA+I GKE +ISIGGATTMD+TLP+IVKFGGK+AG+IAFIHGFLLS
Sbjct: 126 NFIREVFTVLSYPMLAKIFGKEPSISIGGATTMDSTLPIIVKFGGKEAGVIAFIHGFLLS 185
Query: 181 LLVPILVPTLAS 192
LLVPI+VP L S
Sbjct: 186 LLVPIIVPALTS 197
>dbj|BAA35588.1| (D90724) Hypothetical protein HI1452 [Escherichia coli]
>gi|4062457|dbj|BAA35592.1| (D90725) Hypothetical
protein HI1452 [Escherichia coli]
Length = 299
Score = 118 bits (292), Expect = 6e-26
Identities = 64/180 (35%), Positives = 108/180 (59%), Gaps = 7/180 (3%)
Query: 13 LGFILGKLGF----DPGNSYELALYALIFVIGLDLGANAKAEEVKKAISHKTLALPIATL 68
+GF +G G + E L L+F++G+ L N + + ++ + + + + +
Sbjct: 117 IGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLK-QIVLNRRGMIVAVVVV 175
Query: 69 LGSIIGGIVSSFIVGLPLKWALTISAGVGWYSLTGAILTQ-YSPVYGVIGFLANFIREVI 127
+ S+IGG++++FI+ LP+ AL +++G GWYSL+G +LT+ + PV G F + RE+I
Sbjct: 176 VSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELI 235
Query: 128 TVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLSLLVPILV 187
+ P L R + A+ + GAT+MD TLP++ + GG D A +HGF+LSLLVPIL+
Sbjct: 236 AIMLIPGLIR-RSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILI 294
>sp|P75826|YBJE_ECOLI HYPOTHETICAL 34.4 KD PROTEIN IN POXB-AQPZ INTERGENIC REGION
>gi|7466799|pir||B64826 probable membrane protein ybjE -
Escherichia coli >gi|1787100|gb|AAC73961.1| (AE000189)
putative surface protein [Escherichia coli K12]
Length = 315
Score = 118 bits (292), Expect = 6e-26
Identities = 64/180 (35%), Positives = 108/180 (59%), Gaps = 7/180 (3%)
Query: 13 LGFILGKLGF----DPGNSYELALYALIFVIGLDLGANAKAEEVKKAISHKTLALPIATL 68
+GF +G G + E L L+F++G+ L N + + ++ + + + + +
Sbjct: 133 IGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLK-QIVLNRRGMIVAVVVV 191
Query: 69 LGSIIGGIVSSFIVGLPLKWALTISAGVGWYSLTGAILTQ-YSPVYGVIGFLANFIREVI 127
+ S+IGG++++FI+ LP+ AL +++G GWYSL+G +LT+ + PV G F + RE+I
Sbjct: 192 VSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELI 251
Query: 128 TVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLSLLVPILV 187
+ P L R + A+ + GAT+MD TLP++ + GG D A +HGF+LSLLVPIL+
Sbjct: 252 AIMLIPGLIR-RSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILI 310
>pir||E72627 hypothetical protein APE1477 - Aeropyrum pernix (strain K1)
>gi|5105161|dbj|BAA80475.1| (AP000061) 308aa long
hypothetical protein [Aeropyrum pernix]
Length = 308
Score = 115 bits (285), Expect = 4e-25
Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 9/190 (4%)
Query: 10 ALSLGFILGKL--GFDPGNSYE-----LALYALIFVIGLDLGANAKAEEVKKAISHKTLA 62
A+ L F L L G+ G+S+ L LY L+F G +G A + + L
Sbjct: 115 AVILAFFLAGLASGWLTGSSFPDVVSTLLLYILLFQAGYLVGGAAGLRGMLRG-GRLGLL 173
Query: 63 LPIATLLGSIIGGIVSSFIVGLPLKWALTISAGVGWYSLTGAILTQYSPVYGVIGFLANF 122
L ++ L+G +IGG ++F++G L+ + + GWYSL G +L P YG + + N
Sbjct: 174 LALSCLVGGVIGGAAAAFVLGWSLEAGVAMGVSSGWYSLAGPLLYTIDPYYGAVALVGNM 233
Query: 123 IREVITVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLSLL 182
+RE + YP+LAR + + A++ GGATTMDT LP+I+ G+ A + AF+ G LL+LL
Sbjct: 234 LREAFHIVVYPLLARRIPIQ-AVAFGGATTMDTGLPVILASSGERAALPAFVQGALLTLL 292
Query: 183 VPILVPTLAS 192
+ +L+P S
Sbjct: 293 LSLLLPLYVS 302
>sp|P44201|YBJE_HAEIN HYPOTHETICAL PROTEIN HI1452 >gi|1074785|pir||D64030 hypothetical
protein HI1452 - Haemophilus influenzae (strain Rd KW20)
>gi|1574290|gb|AAC23105.1| (U32823) H. influenzae
predicted coding region HI1452 [Haemophilus influenzae
Rd]
Length = 195
Score = 104 bits (256), Expect = 1e-21
Identities = 66/192 (34%), Positives = 106/192 (54%), Gaps = 9/192 (4%)
Query: 7 ILLALSLGFILGKLGFD----PGNSYELALYALIFVIGLDLGANAKAEEVKKAISHKT-L 61
+L A+ +G +LG L D P S L LIF +G+ L N + +K+ + +K L
Sbjct: 4 LLSAVIIGIVLGWLCKDWLHFPNGSNLYVLITLIFFVGIQLRNNGIS--LKEVLLNKQGL 61
Query: 62 ALPIATLLGSIIGGIVSSFIVGLPLKWALTISAGVGWYSLTGAILTQ-YSPVYGVIGFLA 120
+ L S+IGG++S+F + +P+ L S+G GWYSL+ +LT + P+ G I F
Sbjct: 62 MMGAIFTLSSLIGGVISAFFLSMPITQGLAFSSGFGWYSLSSVVLTNAWGPMQGSIAFFN 121
Query: 121 NFIREVITVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLS 180
+ RE++++ P+ + + AI I GAT +D TLP+I K GG + IA G + +
Sbjct: 122 DLSREILSLFLIPLFMQHY-RSTAIEITGATALDCTLPIIQKSGGIEVTPIAISFGMVTN 180
Query: 181 LLVPILVPTLAS 192
LL P+L+ +S
Sbjct: 181 LLPPLLLVFFSS 192
>gb|AAK42350.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 299
Score = 99.8 bits (245), Expect = 2e-20
Identities = 59/167 (35%), Positives = 92/167 (54%), Gaps = 3/167 (1%)
Query: 26 NSYELALYALIFVIGLDLGANAKAEEVKKAISHKTLALPIATLLGSIIGGIVSSFIVGLP 85
N + LYAL V+G +G + + + + ++L I T+LG II +V +
Sbjct: 133 NLVDYELYALASVLGYTMGKDVNRKVILNSSKDSLISLFI-TILGDIILALVIYMLHIAN 191
Query: 86 LKWALTISAGVGWYSLTGAILTQYS-PVYGVIGFLANFIREVITVTAYPILARI-LGKEV 143
L + I+ GWYS G ++ S P G + FL NF+RE +T P L R+
Sbjct: 192 LTISFAIALASGWYSYVGPLVAVSSNPYLGTLAFLINFLREQLTYVLVPFLLRVKFEPRS 251
Query: 144 AISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLSLLVPILVPTL 190
A+++GGAT MDTTLPL V+ GK+ + A I G +L+L++PI++P +
Sbjct: 252 AVAVGGATAMDTTLPLYVEVLGKEYALSAMITGVILTLIIPIILPLI 298
>pir||B82235 conserved hypothetical protein VC1151 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655625|gb|AAF94310.1|
(AE004195) conserved hypothetical protein [Vibrio
cholerae]
Length = 301
Score = 97.5 bits (239), Expect = 1e-19
Identities = 60/192 (31%), Positives = 104/192 (53%), Gaps = 7/192 (3%)
Query: 7 ILLALSLGFILGKLGFDPGNSYELA----LYALIFVIGLDLGANAKAEEVKKAISHKTLA 62
++L + G + G L + E A L+ L+F IG+ L N+ + ++ +
Sbjct: 110 LILVVGAGLVAGVLLNQDLHWVESASGWILFLLLFFIGIQL-RNSGLSLKQILLNKHGMV 168
Query: 63 LPIATLLGSIIGGIVSSFIVGLPLKWALTISAGVGWYSLTGAILTQ-YSPVYGVIGFLAN 121
+ +L S +GG+++++++ +P+ AL +++G GWYSL G ++ + PV G F+
Sbjct: 169 IAAVIILTSWLGGVIAAWLLDMPIYQALAMASGFGWYSLAGILVGDAFGPVLGGASFMIE 228
Query: 122 FIREVITVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLSL 181
+RE++ + P+L R AI GAT MD TLP+I GG +A + GF+LSL
Sbjct: 229 LLRELVALVLIPMLIR-RKPCTAIGYAGATAMDFTLPVIQTTGGVKCVPVAIVSGFILSL 287
Query: 182 LVPILVPTLASM 193
LVP+L+ S+
Sbjct: 288 LVPVLILFFVSL 299
>pir||G81069 conserved hypothetical protein NMB1562 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226809|gb|AAF41916.1| (AE002506) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 300
Score = 87.4 bits (213), Expect = 1e-16
Identities = 57/188 (30%), Positives = 105/188 (55%), Gaps = 8/188 (4%)
Query: 13 LGFILGKLGFD---PGNSYEL-ALYALIFVIGLDLGANAKAEEVKKAISHKTLALPIATL 68
LGF GKL D P S + L L+F+IG+ L ++ + + ++ + + L + +
Sbjct: 115 LGFAFGKLMRDIWMPSESAGMYCLMLLVFLIGVQLKSSGVSLR-QVLVNRRGIRLSVWFM 173
Query: 69 LGSIIGGIV-SSFIVGLPLKWALTISAGVGWYSLTGAILTQ-YSPVYGVIGFLANFIREV 126
L S+ GG++ ++ G+ L +++G GWYSL+G ++T+ Y V+G I L + RE+
Sbjct: 174 LSSLSGGLLFAASTDGVSWTKGLAMASGFGWYSLSGLVMTEAYGAVWGSIMLLNDLAREL 233
Query: 127 ITVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLSLLVPIL 186
+ P+L + + A+ +GGAT+MD TLP+I GG + +A G ++++ P L
Sbjct: 234 FALAFIPLLMKRF-PDAAVGVGGATSMDFTLPVIQGAGGLEVVPVAVSFGVVVNIAAPFL 292
Query: 187 VPTLASMG 194
+ +++G
Sbjct: 293 MVVFSALG 300
>pir||F81799 hypothetical integral membrane protein NMA1750 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7380392|emb|CAB84978.1| (AL162757) hypothetical
integral membrane protein [Neisseria meningitidis Z2491]
Length = 300
Score = 86.2 bits (210), Expect = 3e-16
Identities = 56/188 (29%), Positives = 104/188 (54%), Gaps = 8/188 (4%)
Query: 13 LGFILGKLGFD----PGNSYELALYALIFVIGLDLGANAKAEEVKKAISHKTLALPIATL 68
LGF GKL D N+ L L+ +IG+ L ++ + + ++ + + L + +
Sbjct: 115 LGFASGKLMRDIWMPSENAGMYCLMLLVLLIGVQLKSSGVSLR-QVLVNRRGIRLSVWFM 173
Query: 69 LGSIIGGIV-SSFIVGLPLKWALTISAGVGWYSLTGAILTQ-YSPVYGVIGFLANFIREV 126
L S+ GG++ ++ G+ L +++G GWYSL+G ++T+ Y V+G I L + RE+
Sbjct: 174 LSSLSGGLLFAASADGVSWVKGLAMASGFGWYSLSGLVMTEAYGAVWGSIALLNDLAREL 233
Query: 127 ITVTAYPILARILGKEVAISIGGATTMDTTLPLIVKFGGKDAGIIAFIHGFLLSLLVPIL 186
+ P+L + + A+ +GGAT+MD TLP+I GG +A +A G ++++ P L
Sbjct: 234 FALAFIPLLMKRF-PDAAVGVGGATSMDFTLPVIRGAGGLEAVPVAVSFGVVVNIAAPFL 292
Query: 187 VPTLASMG 194
+ +++G
Sbjct: 293 MVVFSALG 300
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.146 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69151409
Number of Sequences: 2977
Number of extensions: 2822718
Number of successful extensions: 11454
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11433
Number of HSP's gapped (non-prelim): 10
length of query: 196
length of database: 189,106,746
effective HSP length: 52
effective length of query: 144
effective length of database: 157,985,422
effective search space: 22749900768
effective search space used: 22749900768
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)