BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0912 (racD-1) DE:aspartate racemase
(228 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75048 aspartate racemase PAB0912 - Pyrococcus abyssi (stra... 450 e-126
pir||G71112 probable aspartate racemase - Pyrococcus horikoshii ... 400 e-111
dbj|BAA35091.1| (AB015880) aspartate racemase [Thermococcus sp. ... 320 8e-87
pir||T08467 aspartate racemase (EC 5.1.1.13) - Desulfurococcus s... 318 4e-86
sp|P29079|RACD_STRTR ASPARTATE RACEMASE >gi|79944|pir||S16175 as... 141 7e-33
dbj|BAA76695.1| (AB022670) aspartate racemase [Pyrococcus sp. GB-D] 138 6e-32
pir||H71181 probable aspartate racemase - Pyrococcus horikoshii ... 127 1e-28
pir||S60208 fomE protein - Streptomyces wedmorensis >gi|1061000|... 125 6e-28
pir||B75157 aspartate racemase PAB2073 - Pyrococcus abyssi (stra... 122 3e-27
dbj|BAA76693.1| (AB022668) aspartate racemase [Thermococcus sp. ... 120 1e-26
pir||E81424 probable amino acid recemase Cj0085c [imported] - Ca... 114 8e-25
sp|P32960|RACX_BACSU PROBABLE AMINO ACID RACEMASE >gi|541393|pir... 112 3e-24
emb|CAB08017.1| (Z94043) amino acid racemase [Bacillus subtilis]... 112 3e-24
gi|11499017 aspartate racemase [Archaeoglobus fulgidus] >gi|7444... 111 7e-24
gb|AAD54635.1|AF081588_2 (AF081588) aspartate racemase [Zymomona... 103 2e-21
dbj|BAB12212.1| (AB032549) racemase [Microcystis aeruginosa] 96 5e-19
gb|AAF00963.1|AF183408_11 (AF183408) McyF [Microcystis aeruginosa] 95 8e-19
gb|AAD29652.1|AF124757_12 (AF124757) aspartate racemase [Zymomon... 92 4e-18
gb|AAD39669.1|AC007591_34 (AC007591) Is a member of the PF|01177... 88 8e-17
sp|P03813|YGEA_ECOLI HYPOTHETICAL 25.2 KD PROTEIN IN LYSR-ARAE I... 88 1e-16
sp|P32968|YPNL_ERWCA HYPOTHETICAL PROTEIN IN PNLA 3'REGION 72 5e-12
>pir||D75048 aspartate racemase PAB0912 - Pyrococcus abyssi (strain Orsay)
>gi|5458794|emb|CAB50281.1| (AJ248287) aspartate
racemase [Pyrococcus abyssi]
Length = 228
Score = 450 bits (1146), Expect = e-126
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPR 60
MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPR
Sbjct: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPR 60
Query: 61 PELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKVG 120
PELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKVG
Sbjct: 61 PELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKVG 120
Query: 121 LLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIAR 180
LLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIAR
Sbjct: 121 LLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIAR 180
Query: 181 KLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVALEK 228
KLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVALEK
Sbjct: 181 KLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVALEK 228
>pir||G71112 probable aspartate racemase - Pyrococcus horikoshii
>gi|3257078|dbj|BAA29761.1| (AP000003) 228aa long
hypothetical aspartate racemase [Pyrococcus horikoshii]
Length = 228
Score = 400 bits (1016), Expect = e-111
Identities = 193/228 (84%), Positives = 215/228 (93%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPR 60
MK IGILGGMGPLAT E+F+RIV KTPAK+DQ+HPK+IIFNNPQIPDRTA+ILGKGEDPR
Sbjct: 1 MKTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPR 60
Query: 61 PELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKVG 120
P+LI TAK+LEECGADFIIMPCNTAHAF+EDIRKAI+IPIISMIEETAKKVKELGFKK G
Sbjct: 61 PQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGFKKAG 120
Query: 121 LLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIAR 180
LLATTGTI SGVYEKEFSKYG+E++ P EDEQ++VM+GIY+GVKAGNL+LG+ELL+K A+
Sbjct: 121 LLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAK 180
Query: 181 KLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVALEK 228
LEERGAECIIAGCTEVSVVL + DLKVPLIDPMDVIAE AVKVALEK
Sbjct: 181 ILEERGAECIIAGCTEVSVVLKQDDLKVPLIDPMDVIAEVAVKVALEK 228
>dbj|BAA35091.1| (AB015880) aspartate racemase [Thermococcus sp. KS-8]
Length = 232
Score = 320 bits (812), Expect = 8e-87
Identities = 157/225 (69%), Positives = 189/225 (83%), Gaps = 1/225 (0%)
Query: 2 KVIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPRP 61
+VIGILGGMGPLAT ++F+RIVEKTPAK+DQDHP+III+NNP+IPDRTAFILG G DPRP
Sbjct: 4 RVIGILGGMGPLATADLFRRIVEKTPAKRDQDHPRIIIYNNPKIPDRTAFILGNGPDPRP 63
Query: 62 ELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKVGL 121
ELI +A+KLEECGADFIIMPCNTAH F I+ ++ P++SMIEETAK+++E+G +KVGL
Sbjct: 64 ELITSARKLEECGADFIIMPCNTAHFFAGTIQSSVIYPLVSMIEETAKRIEEMGLRKVGL 123
Query: 122 LATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIARK 181
LAT GTI VY + K GI + +P + +Q VMK IY+GVKAGNLELG+ELL+K+A+K
Sbjct: 124 LATDGTIKGMVYHRALLKRGIHIAVPNKKDQGLVMKAIYEGVKAGNLELGRELLLKVAKK 183
Query: 182 LEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVAL 226
LE R +E IIAGCTEVSVVL DL VPLIDPMDVIAE AVK+AL
Sbjct: 184 LERR-SEGIIAGCTEVSVVLKPGDLTVPLIDPMDVIAERAVKLAL 227
>pir||T08467 aspartate racemase (EC 5.1.1.13) - Desulfurococcus sp. (strain SY)
>gi|1545809|dbj|BAA12209.1| (D84067) aspartate racemase
[Desulfurococcus sp.]
Length = 235
Score = 318 bits (806), Expect = 4e-86
Identities = 156/225 (69%), Positives = 190/225 (84%), Gaps = 1/225 (0%)
Query: 2 KVIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPRP 61
+VIGILGGMGPLAT E+F+RIVEKTPAK+DQ+HP+III+NNP+IPDRTA+ILG+GEDPRP
Sbjct: 4 RVIGILGGMGPLATAELFRRIVEKTPAKRDQEHPRIIIYNNPKIPDRTAYILGRGEDPRP 63
Query: 62 ELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKVGL 121
ELI +A+KLE GADFIIMPCNTAH F EDI+KAIRIP++SM+EETA++VKE+G +KVGL
Sbjct: 64 ELINSARKLESWGADFIIMPCNTAHFFAEDIQKAIRIPLVSMVEETAERVKEMGLRKVGL 123
Query: 122 LATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIARK 181
LAT GTI VY + K GI ++ P QE VM+GIY GVKAGN+ G+ELL+++A+K
Sbjct: 124 LATDGTIKGLVYHRALLKRGIAIVTPDRTGQELVMEGIYRGVKAGNVAYGRELLLRVAKK 183
Query: 182 LEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVAL 226
LE+R + IIAGCTEVSV L DL VPLIDPMDVIAE +VK+AL
Sbjct: 184 LEKR-VDGIIAGCTEVSVALKPDDLSVPLIDPMDVIAEKSVKLAL 227
>sp|P29079|RACD_STRTR ASPARTATE RACEMASE >gi|79944|pir||S16175 aspartate racemase (EC
5.1.1.13) - Streptococcus thermophilus
>gi|47644|emb|CAA43598.1| (X61301) aspartate racemase
[Streptococcus thermophilus]
Length = 243
Score = 141 bits (352), Expect = 7e-33
Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 5/225 (2%)
Query: 6 ILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGED-PRPELI 64
ILGGMG +AT + I +T A KDQ++ ++FN+ +PDRTA+IL + E+ P P L+
Sbjct: 7 ILGGMGTMATESFVRLINHRTKATKDQEYLNYVLFNHATVPDRTAYILDRSEENPMPFLL 66
Query: 65 KTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKK-VKELGFKKVGLLA 123
+K +FI++ CNTAH F E+++ A IPI+ M E A + V++ +V +L
Sbjct: 67 DDIEKQNLLRPNFIVLTCNTAHYFFEELQAATDIPILHMPREAANELVRQHTTGRVAILG 126
Query: 124 TTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIARKLE 183
T G++ +G+YE+E G E +IP QE++ IY +K + L +EL +I +
Sbjct: 127 TEGSMKAGIYEREVKNLGFETVIPDTALQEKINYLIYHEIKESD-HLNQELYYEILEEAV 185
Query: 184 ER-GAECIIAGCTEVSVVLS-EKDLKVPLIDPMDVIAEAAVKVAL 226
ER E +I GCTE+S++ +D P+ID ++A+ ++ AL
Sbjct: 186 ERLNCEKVILGCTELSLMNEFAEDNHYPVIDAQSILADRTIERAL 230
>dbj|BAA76695.1| (AB022670) aspartate racemase [Pyrococcus sp. GB-D]
Length = 70
Score = 138 bits (344), Expect = 6e-32
Identities = 64/70 (91%), Positives = 69/70 (98%)
Query: 12 PLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPRPELIKTAKKLE 71
PLATVE+F+RIVEKTPAK+DQDHPKIII+NNPQIPDRTAFILGKGEDPRP+LI TAKKLE
Sbjct: 1 PLATVELFRRIVEKTPAKRDQDHPKIIIYNNPQIPDRTAFILGKGEDPRPQLIWTAKKLE 60
Query: 72 ECGADFIIMP 81
ECGADFIIMP
Sbjct: 61 ECGADFIIMP 70
>pir||H71181 probable aspartate racemase - Pyrococcus horikoshii
>gi|3258164|dbj|BAA30847.1| (AP000007) 226aa long
hypothetical aspartate racemase [Pyrococcus horikoshii]
Length = 226
Score = 127 bits (316), Expect = 1e-28
Identities = 72/230 (31%), Positives = 137/230 (59%), Gaps = 7/230 (3%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQD-HPKIIIFNNPQIPDRTAFILGKGEDP 59
MK IGI+GG P +T+ +K+ +E + K ++ +P++II++ I + F +G +
Sbjct: 1 MKKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYS---INFKEFFQNPEGWEG 57
Query: 60 RPE-LIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKK 118
R + LI AK LE GA+ I NT H +D+++ + +P++S+I+ A+++ + G +K
Sbjct: 58 RKKILINAAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILKRGVRK 117
Query: 119 VGLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKI 178
V LL T T+ + Y K + G+EV++P ++E+EE+ + I++ + GNL+ KE ++++
Sbjct: 118 VLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLK-NKEWIVRL 176
Query: 179 ARKLEE-RGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVALE 227
K E G E +I GCTE+ + + + D+ V + D ++ +++A E
Sbjct: 177 IEKYRESEGIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELASE 226
>pir||S60208 fomE protein - Streptomyces wedmorensis >gi|1061000|dbj|BAA32489.1|
(AB016934) fomE [Streptomyces wedmorensis]
Length = 233
Score = 125 bits (310), Expect = 6e-28
Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 3/225 (1%)
Query: 4 IGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPRPEL 63
IGI+GG+GPLA + R+VE+T A DQ+HP++++ ++P IP R +L G P +L
Sbjct: 12 IGIIGGLGPLACANFYMRLVEQTTAGSDQEHPEVLLLSSPAIPSRLDHLLSDGPSPVEQL 71
Query: 64 IKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKVGLLA 123
A++L++ GA I MP T A+ +++ A+ +P++ M+ A ++E G + L
Sbjct: 72 QAVARRLQDAGAQLIAMPSVTTQAYYDEVSAAVDVPVVDMLRVVAAGLREAGVLRPALAV 131
Query: 124 TTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIARKLE 183
T G + G+ + G+ + P Q E+ + + + VK+G ++ L K
Sbjct: 132 TDGALKLGLLHRALVDAGLTPVYPDPATQREIQECV-EMVKSGRVQEASAQLRKAVEGEW 190
Query: 184 ERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVALEK 228
R + ++ GCT++S +L E L + D ++ A + +A +
Sbjct: 191 TRPGDGVVVGCTDLSPLLPE--LPPHVYDVTRILGRAVLDMAASR 233
>pir||B75157 aspartate racemase PAB2073 - Pyrococcus abyssi (strain Orsay)
>gi|5457847|emb|CAB49337.1| (AJ248284) aspartate
racemase [Pyrococcus abyssi]
Length = 232
Score = 122 bits (304), Expect = 3e-27
Identities = 72/228 (31%), Positives = 135/228 (58%), Gaps = 7/228 (3%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQD-HPKIIIFNNPQIPDRTAFILGKGEDP 59
MK IGI+GG P +T+ +++ +E + K ++ +P++II++ I R F +G +
Sbjct: 1 MKKIGIIGGTTPESTLYYYQKYIEISREKFEKYVYPELIIYS---INFREFFQNPEGWEG 57
Query: 60 RPE-LIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKK 118
R + LI AK LE GA+ I NT H +D+++ + +P++S+I+ A++V G K+
Sbjct: 58 RKKILINAAKALERAGAELIAFSANTPHIVFDDVQREVNVPMVSIIDAVAEEVIRRGVKR 117
Query: 119 VGLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIK- 177
V LL T T+++ Y K K G+EV++P ++E+EE+ + I++ + G+L+ K+ ++K
Sbjct: 118 VLLLGTKTTMSADFYIKALEKKGLEVVVPNDEEKEELNRIIFEELAFGDLK-NKDWIVKL 176
Query: 178 IARKLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVA 225
I R E E +I GCTE+ + + + D+ V + D ++ +++A
Sbjct: 177 IERYKESENIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELA 224
>dbj|BAA76693.1| (AB022668) aspartate racemase [Thermococcus sp. KS-1]
>gi|4587275|dbj|BAA76694.1| (AB022669) aspartate
racemase [Thermococcus sp.]
Length = 70
Score = 120 bits (298), Expect = 1e-26
Identities = 54/70 (77%), Positives = 64/70 (91%)
Query: 12 PLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPRPELIKTAKKLE 71
PLAT ++F+RIVE+TPA++DQDHP+III+NNP+IPDRTAFILG G DPRPELI +AKKLE
Sbjct: 1 PLATADLFRRIVERTPARRDQDHPRIIIYNNPKIPDRTAFILGNGPDPRPELIASAKKLE 60
Query: 72 ECGADFIIMP 81
GADFIIMP
Sbjct: 61 SWGADFIIMP 70
>pir||E81424 probable amino acid recemase Cj0085c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6967579|emb|CAB72569.1|
(AL139074) putative amino acid recemase [Campylobacter
jejuni]
Length = 231
Score = 114 bits (283), Expect = 8e-25
Identities = 70/229 (30%), Positives = 126/229 (54%), Gaps = 2/229 (0%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAK-KDQDHPKIIIFNNPQIPDRTAFILGKGEDP 59
MK IGI+GGM +T+ +K I + K K + KI++++ K ++
Sbjct: 1 MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVNFEEIENLQSQDKWQEA 60
Query: 60 RPELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKV 119
L + AKKLE GA+FII+ NT H ++I++ I IPI+ + + +AK +K+ +K+
Sbjct: 61 AQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPILHIAKSSAKALKQENIQKI 120
Query: 120 GLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLEL-GKELLIKI 178
GLL T T+ Y+K + I V+ P +++ + V I++ + G ++ KE + I
Sbjct: 121 GLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDIIFNELCKGEIKQDSKEKYLNI 180
Query: 179 ARKLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVALE 227
+KL+E+GA+ ++ CTE+ +++S+ D + + D + A A AL+
Sbjct: 181 IKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLIHALDAANEALK 229
>sp|P32960|RACX_BACSU PROBABLE AMINO ACID RACEMASE >gi|541393|pir||B36908 aspartate
racemase racX - Bacillus subtilis
>gi|143291|gb|AAA22641.1| (L10629) amino acid racemase
[Bacillus subtilis]
Length = 230
Score = 112 bits (278), Expect = 3e-24
Identities = 69/231 (29%), Positives = 124/231 (52%), Gaps = 15/231 (6%)
Query: 3 VIGILGGMGPLATVEMFKRIVEKTP----AKKDQDHPKIIIFNNPQIPDRTAFILGKG-- 56
+IGIL GMGP +T ++++ A D D+P ++I++ P T F +
Sbjct: 4 MIGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCP-----TPFYADRPID 58
Query: 57 -EDPRPELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELG 115
++ + +I A KLE+ G DFI +PCNTAH + E+I++A+ +P++ ++EET K++
Sbjct: 59 HDEMKKAIIDGAVKLEKTGVDFIALPCNTAHVYYEEIQQALSVPMLHIVEETIKEIPHPA 118
Query: 116 FKKVGLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELL 175
KK +L T TI S +Y+K G EV+ +D ++ + + +K N + L
Sbjct: 119 -KKAVVLGTEPTIQSAIYQKVLKGNGQEVI--HKDHWQQAVNQLIAAIKQPNHMQHTQAL 175
Query: 176 IKIARKLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVAL 226
+ + + A+ II+ CT+++ VL ++P+ID +A++ V L
Sbjct: 176 WQTLYEEISQHADIIISACTDLNAVLDHIQSEIPIIDSSACLAKSTVSTYL 226
>emb|CAB08017.1| (Z94043) amino acid racemase [Bacillus subtilis]
>gi|2635956|emb|CAB15448.1| (Z99121) amino acid racemase
[Bacillus subtilis]
Length = 227
Score = 112 bits (278), Expect = 3e-24
Identities = 69/231 (29%), Positives = 124/231 (52%), Gaps = 15/231 (6%)
Query: 3 VIGILGGMGPLATVEMFKRIVEKTP----AKKDQDHPKIIIFNNPQIPDRTAFILGKG-- 56
+IGIL GMGP +T ++++ A D D+P ++I++ P T F +
Sbjct: 1 MIGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCP-----TPFYADRPID 55
Query: 57 -EDPRPELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELG 115
++ + +I A KLE+ G DFI +PCNTAH + E+I++A+ +P++ ++EET K++
Sbjct: 56 HDEMKKAIIDGAVKLEKTGVDFIALPCNTAHVYYEEIQQALSVPMLHIVEETIKEIPHPA 115
Query: 116 FKKVGLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELL 175
KK +L T TI S +Y+K G EV+ +D ++ + + +K N + L
Sbjct: 116 -KKAVVLGTEPTIQSAIYQKVLKGNGQEVI--HKDHWQQAVNQLIAAIKQPNHMQHTQAL 172
Query: 176 IKIARKLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVAL 226
+ + + A+ II+ CT+++ VL ++P+ID +A++ V L
Sbjct: 173 WQTLYEEISQHADIIISACTDLNAVLDHIQSEIPIIDSSACLAKSTVSTYL 223
>gi|11499017 aspartate racemase [Archaeoglobus fulgidus] >gi|7444690|pir||E69427
aspartate racemase homolog - Archaeoglobus fulgidus
>gi|2649148|gb|AAB89824.1| (AE001005) aspartate racemase
[Archaeoglobus fulgidus]
Length = 225
Score = 111 bits (275), Expect = 7e-24
Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 7/228 (3%)
Query: 3 VIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPRPE 62
+IG++GGM +TVE ++ + E K + ++ + + + D E
Sbjct: 1 MIGLIGGMSWESTVEYYRIMNEMVKEKLGGWNSAEVLLYSVNFEEIVSLQKAGEWDRLGE 60
Query: 63 LI-KTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKVGL 121
++ A KLE GA +++ NT H + + K I IP+I++I+ TA+ +K G KK GL
Sbjct: 61 ILGDIAVKLENAGAKAVLICTNTMHKVADAVEKRIGIPLINIIDVTAEALKGDGVKKAGL 120
Query: 122 LATTGTIASGVYEKEFSKYGIEVLIP-REDEQEEVMKGIYDGVKAGNL-ELGKELLIKIA 179
L T T+ G Y++ K+GIEV++P +E+++ + I+D + G + E + L KI
Sbjct: 121 LGTKFTMEDGFYQERMKKHGIEVIVPEKEEDRNAIHSIIFDELCLGIIREESERRLRKIV 180
Query: 180 RKLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVALE 227
+L+ERGAE II GCTE+ ++L +++ + + AEAAV++ LE
Sbjct: 181 DELKERGAEGIILGCTELPLILRDEE----FYNTTKLHAEAAVQLLLE 224
>gb|AAD54635.1|AF081588_2 (AF081588) aspartate racemase [Zymomonas mobilis]
>gi|11095428|gb|AAG29868.1|AF313764_11 (AF313764)
aspartate racemase [Zymomonas mobilis]
Length = 229
Score = 103 bits (254), Expect = 2e-21
Identities = 66/228 (28%), Positives = 118/228 (50%), Gaps = 2/228 (0%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAFILGKGEDPR 60
MK IG++GGM +TV ++ I E + ++ ++ + A D
Sbjct: 1 MKKIGLIGGMSWESTVTYYQIINEAIRDARGGLVSADLLMHSLNFAEVVALQKADRWDDA 60
Query: 61 PELIKTAKK-LEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKV 119
+L+ A L + GAD +++ NT H + + + +P+I++++ETAK +K+ G K+
Sbjct: 61 AKLLGAAGAGLAKAGADCVLICTNTMHLVADAVAEISAVPLINIVDETAKALKKDGRKRP 120
Query: 120 GLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNL-ELGKELLIKI 178
LLAT T+ G Y G++V+ P ++++ V I+D + G + E ++ +KI
Sbjct: 121 LLLATRYTMEHGFYTDRMKNQGLDVITPEDEDRGFVHDVIFDELCQGEVKESSRQGYLKI 180
Query: 179 ARKLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVAL 226
K G + +I GCTE+ +++ + L +P D + AEAAVK AL
Sbjct: 181 IEKARAEGVDSVILGCTEIPLLIKQDMLDLPCYDSTQIHAEAAVKFAL 228
>dbj|BAB12212.1| (AB032549) racemase [Microcystis aeruginosa]
Length = 251
Score = 95.6 bits (234), Expect = 5e-19
Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 9/224 (4%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTP-AKKDQDHPKIIIFNNPQIPDRTAFILGKGEDP 59
+ ++G+LGGMGP+ T E K I E P K+Q+ P +I+F+ P PDRT I E
Sbjct: 5 LPILGVLGGMGPVVTAEFLKSIYEYNPFIDKEQEAPNVIVFSLPSAPDRTGSIDSGKERE 64
Query: 60 RPELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKV 119
+ I+ + AD I++ C TAH + I + ++ +IS+I+ ++++E K
Sbjct: 65 FIDFIQVNLEHLNKLADCIVIGCCTAHYALPQISENLKDKLISLIKIADQELQEYN-KPT 123
Query: 120 GLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIA 179
LLA+TGT ++ + + + ++ E +Q+ + + IY +K G L +L I
Sbjct: 124 LLLASTGTYQKKLFHEGCTTADL-IISLSESDQKLIHEMIYKVLKRGQDPL--SILRDIE 180
Query: 180 RKLEERGAECIIAGCTEVSVVLSEKDLK----VPLIDPMDVIAE 219
LE+ + I+GCTE ++ LK + IDP+ IA+
Sbjct: 181 ALLEKYNSRSYISGCTEFHLLTKSLKLKGIDSIKAIDPLSTIAQ 224
>gb|AAF00963.1|AF183408_11 (AF183408) McyF [Microcystis aeruginosa]
Length = 251
Score = 94.8 bits (232), Expect = 8e-19
Identities = 67/224 (29%), Positives = 117/224 (51%), Gaps = 9/224 (4%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTP-AKKDQDHPKIIIFNNPQIPDRTAFILGKGEDP 59
+ ++G+LGGMGP+ T E K I E P K+Q+ P +I+F+ P PDRT I E
Sbjct: 5 LPILGVLGGMGPVVTAEFLKSIYEYNPFIDKEQESPNVIVFSFPSAPDRTGSIDSGKERE 64
Query: 60 RPELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKV 119
+ I+ + AD I++ C TAH + I + ++ +IS+I+ ++++E +
Sbjct: 65 FIDFIQVNLEHLNKLADCIVIGCCTAHYALPQIPENLKDKLISLIKIADQELQEYN-EPT 123
Query: 120 GLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELGKELLIKIA 179
LLA+TGT ++++ + + ++ E +Q+ + + IY +K G+ L +L I
Sbjct: 124 LLLASTGTYQKKLFQEGCTTADL-IISLSESDQKLIHEMIYKVLKRGHDPL--SILRDIE 180
Query: 180 RKLEERGAECIIAGCTEVSVVLSEKDLK----VPLIDPMDVIAE 219
LE+ I+GCTE ++ LK + IDP+ IA+
Sbjct: 181 ALLEKYNTRSYISGCTEFHLLTKSLKLKGIDSIKAIDPLSTIAQ 224
>gb|AAD29652.1|AF124757_12 (AF124757) aspartate racemase [Zymomonas mobilis]
Length = 232
Score = 92.4 bits (226), Expect = 4e-18
Identities = 63/236 (26%), Positives = 110/236 (45%), Gaps = 13/236 (5%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPDRTAF-ILGKGEDP 59
MK +G++GG+GP +T+ +K++V + + N + F IL ED
Sbjct: 1 MKKLGLIGGIGPESTLLYYKKLVYGANNRIGSQ-----FYPNLTVESLNVFDILRLCEDK 55
Query: 60 RPELIKT-----AKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKEL 114
+ T L GAD I + NT H +D++K +P+IS++E T +VK
Sbjct: 56 DYTKLTTYLMHGVNNLIAAGADVIALTGNTPHIVFDDLQKQSDVPLISIVEATCDEVKRQ 115
Query: 115 GFKKVGLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYDGVKAGNLELG--K 172
KVGLL T T+ + +K G+ V+ P+ E + + IY ++ G
Sbjct: 116 NITKVGLLGTRFTMEADFIKKPLIANGMSVITPQPKEIDYIANKIYSELEKGIFSQNTLS 175
Query: 173 ELLIKIARKLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVALEK 228
E + I+R + G E II GCTE+ ++ + + +D M++ A + + ++
Sbjct: 176 EFISIISRMRDSDGIEAIILGCTELPLLFKNTEFTITPLDTMEIHINALLNIICDQ 231
>gb|AAD39669.1|AC007591_34 (AC007591) Is a member of the PF|01177 Aspartate-glutamate racemase
family. EST gb|T43554 comes from this gene.
[Arabidopsis thaliana]
Length = 330
Score = 88.2 bits (215), Expect = 8e-17
Identities = 60/245 (24%), Positives = 118/245 (47%), Gaps = 23/245 (9%)
Query: 4 IGILGGMGPLATVEMFKRIVEKTPAKKDQDHP-----------KIIIFNNPQIPDRTAFI 52
+GI+GG+ +T++ K++V+ + P +++++ P
Sbjct: 81 VGIIGGVSTDSTLKFVKKLVDWSSNDGKSSLPFVLCSDPALNKELLLYEENSYPSLYHRE 140
Query: 53 LGKGEDPR---PELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAK 109
DP+ L + LE CGA I+MPC+ AH + E++ + +P++ M E AK
Sbjct: 141 ESTPVDPKLIVENLRNKRRYLERCGAKLILMPCHIAHIWYEEVCEGSLVPLLHMGECIAK 200
Query: 110 KVKELGFK--------KVGLLATTGTIASGVYEKEFSKYGIEVLIPREDEQEEVMKGIYD 161
+++E K +VG++AT+ T+++G Y+++ G E ++P + E + +
Sbjct: 201 ELQEAKMKPLEAGNPLRVGVMATSATLSAGFYQEKLQSNGFEAVLPDKATMEHTVIPSIE 260
Query: 162 GVKAGNLELGKELLIKIARKLEERGAECIIAGCTEVSVVLSEKD-LKVPLIDPMDVIAEA 220
+K ++E + LL + L + ++ G E+ +L D L +DPMD +A +
Sbjct: 261 AMKRKDMEGARNLLRIALQVLLVQAVNVVMLGSDEMRDLLPGDDPLLKKCVDPMDALARS 320
Query: 221 AVKVA 225
A+K A
Sbjct: 321 AIKWA 325
>sp|P03813|YGEA_ECOLI HYPOTHETICAL 25.2 KD PROTEIN IN LYSR-ARAE INTERGENIC REGION
>gi|76226|pir||QQECK hypothetical 25.2K (lysR-araE
intergenic region) - Escherichia coli
>gi|145322|gb|AAA23470.1| (J03732) ORF X [Escherichia
coli] >gi|882733|gb|AAB40487.1| (U29581) alternate name
ygeA; orfX of J03732; ORF_f230 [Escherichia coli]
>gi|1128956|gb|AAA83863.1| (J01614) unknown protein
[Escherichia coli] >gi|1789205|gb|AAC75879.1| (AE000367)
putative resistance proteins [Escherichia coli K12]
Length = 230
Score = 87.8 bits (214), Expect = 1e-16
Identities = 58/229 (25%), Positives = 110/229 (47%), Gaps = 3/229 (1%)
Query: 1 MKVIGILGGMGPLATVEMFKRIVEKTPAKKDQDHPKIIIFNNPQIPD-RTAFILGKGEDP 59
MK IG+LGGM +T+ ++ I E + H ++ ++ + G+ +
Sbjct: 1 MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVDFHEIEECQRRGEWDKT 60
Query: 60 RPELIKTAKKLEECGADFIIMPCNTAHAFIEDIRKAIRIPIISMIEETAKKVKELGFKKV 119
L + A L+ GA+ I++ NT H + I +P + + + T + + G +V
Sbjct: 61 GDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAGMTRV 120
Query: 120 GLLATTGTIASGVYEKEFS-KYGIEVLIPREDEQEEVMKGIYDGVKAGNL-ELGKELLIK 177
LL T T+ Y + ++ I LIP DE+ ++ + I++ + G E + +
Sbjct: 121 ALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQIIFEELCLGQFTEASRAYCAQ 180
Query: 178 IARKLEERGAECIIAGCTEVSVVLSEKDLKVPLIDPMDVIAEAAVKVAL 226
+ +L E+GA+ +I GCTE+ +++ E+ +P+ D + AE AV L
Sbjct: 181 VIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAAIHAEDAVAFML 229
>sp|P32968|YPNL_ERWCA HYPOTHETICAL PROTEIN IN PNLA 3'REGION
Length = 150
Score = 72.2 bits (174), Expect = 5e-12
Identities = 37/117 (31%), Positives = 67/117 (56%), Gaps = 1/117 (0%)
Query: 88 FIEDIRKAIRIPIISMIEETAKKVKELGFKKVGLLATTGTIASGVYEKEFSKYGIEVLIP 147
+ D+++ R +IS+I+ T + +K +VGLLATT T+ + +Y+ I+ P
Sbjct: 1 WFNDLKQQCRAEMISIIDVTCQAIKHANTTRVGLLATTATVKARIYQDNLITDNIDCYTP 60
Query: 148 REDEQEEVMKGIYDGVKAGNLELGKELLIKIARKLEERGAECIIAGCTEVSVVLSEK 204
+ +Q +VM+ IY K+G++ LL + +L + G E II GCTE+ ++L ++
Sbjct: 61 DDADQHQVMESIY-AYKSGDIAGAYSLLSPVKDRLLQAGVEKIILGCTELPLILEQE 116
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81055730
Number of Sequences: 2977
Number of extensions: 3391340
Number of successful extensions: 8785
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8730
Number of HSP's gapped (non-prelim): 24
length of query: 228
length of database: 189,106,746
effective HSP length: 56
effective length of query: 172
effective length of database: 155,591,474
effective search space: 26761733528
effective search space used: 26761733528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)