BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0916 (nfi) DE:endonuclease V (nfi)
         (194 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75049 endonuclease v (nfi) PAB0916 - Pyrococcus abyssi (st...   383  e-106
pir||F71111 hypothetical protein PH0661 - Pyrococcus horikoshii ...   280  1e-74
gb|AAK42594.1| Endonuclease V (nfi) [Sulfolobus solfataricus]         108  5e-23
gi|11497746 conserved hypothetical protein [Archaeoglobus fulgid...   100  2e-20
emb|CAC11602.1| (AL445064) endonuclease V related protein [Therm...    98  7e-20
pir||C72747 probable endonuclease V APE0506 - Aeropyrum pernix (...    89  3e-17
gb|AAF33502.1| (AF170176) 95% identity over 218 of 233 amino aci...    87  1e-16
pir||B72202 endonuclease V - Thermotoga maritima (strain MSB8) >...    86  3e-16
pir||A82625 endonuclease V (deoxyinosine 3'endonuclease) XF1892 ...    86  3e-16
pir||A65207 hypothetical 24.9 kD protein in heme-hupa intergenic...    85  5e-16
sp|P32679|NFI_ECOLI ENDONUCLEASE V (DEOXYINOSINE 3'ENDONUCLEASE)       85  5e-16
pir||D70349 conserved hypothetical protein aq_548 - Aquifex aeol...    78  7e-14
pir||T35251 probable endonuclease - Streptomyces coelicolor >gi|...    72  5e-12

>pir||B75049 endonuclease v (nfi) PAB0916 - Pyrococcus abyssi (strain Orsay)
           >gi|5458800|emb|CAB50287.1| (AJ248287) endonuclease V
           (nfi) [Pyrococcus abyssi]
           Length = 194
           
 Score =  383 bits (974), Expect = e-106
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MLEKIAEVQKKLSKRIVEKEVRMVSKIAAVDVSYKGNKARVALVICSFPDCKVLKTKVLE 60
           MLEKIAEVQKKLSKRIVEKEVRMVSKIAAVDVSYKGNKARVALVICSFPDCKVLKTKVLE
Sbjct: 1   MLEKIAEVQKKLSKRIVEKEVRMVSKIAAVDVSYKGNKARVALVICSFPDCKVLKTKVLE 60

Query: 61  TEVSFPYIPTFFFLRETRPILLVTKGEEFDVLIVEGHGKAHPRKYGLASHIGLILGKPTI 120
           TEVSFPYIPTFFFLRETRPILLVTKGEEFDVLIVEGHGKAHPRKYGLASHIGLILGKPTI
Sbjct: 61  TEVSFPYIPTFFFLRETRPILLVTKGEEFDVLIVEGHGKAHPRKYGLASHIGLILGKPTI 120

Query: 121 GVAKKLLRGTPENSYRKVGKAYVSVGNMITLKDAVRIIEKLLDGGYPKPLKLADKLSKGK 180
           GVAKKLLRGTPENSYRKVGKAYVSVGNMITLKDAVRIIEKLLDGGYPKPLKLADKLSKGK
Sbjct: 121 GVAKKLLRGTPENSYRKVGKAYVSVGNMITLKDAVRIIEKLLDGGYPKPLKLADKLSKGK 180

Query: 181 ISEDENTLPSDKTS 194
           ISEDENTLPSDKTS
Sbjct: 181 ISEDENTLPSDKTS 194


>pir||F71111 hypothetical protein PH0661 - Pyrococcus horikoshii
           >gi|3257069|dbj|BAA29752.1| (AP000003) 211aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 211
           
 Score =  280 bits (708), Expect = 1e-74
 Identities = 141/195 (72%), Positives = 167/195 (85%), Gaps = 2/195 (1%)

Query: 1   MLEKIAEVQKKLSKRIVEKEVRMVSKIAAVDVSYKGNKARVALVICSFPDCKVLKTKVLE 60
           MLE+IA +QKKLSK IVE+++  V K+AAVDVSYK  KAR ALVI +FP+ +VLKTKV+E
Sbjct: 1   MLERIANIQKKLSKSIVERKINEVRKVAAVDVSYKEEKARAALVITTFPEGEVLKTKVIE 60

Query: 61  TEVSFPYIPTFFFLRETRPILLVTKGEEFDVLIVEGHGKAHPRKYGLASHIGLILGKPTI 120
           T VSFPYIPTFFFLRET+PIL+ TKGE FDVLIVEGHGKAHPR YGLASHIG++L KPTI
Sbjct: 61  TTVSFPYIPTFFFLRETKPILIATKGETFDVLIVEGHGKAHPRGYGLASHIGVVLRKPTI 120

Query: 121 GVAKKLLRGTPENSYRKVGKAYVSVGNMITLKDAVRIIEKLLD-GGYPKPLKLADKLSKG 179
           GVAK+LL+ TP+++Y+KVGK YVSVGN+ITL+DA +II  +LD  GYPKPLKLADKLSKG
Sbjct: 121 GVAKRLLKNTPKDTYKKVGKVYVSVGNLITLEDATKIIRAILDESGYPKPLKLADKLSKG 180

Query: 180 KISEDENTLPSDKTS 194
           +I E +NT PS   S
Sbjct: 181 RIYEVKNT-PSPNRS 194


>gb|AAK42594.1| Endonuclease V (nfi) [Sulfolobus solfataricus]
           Length = 198
           
 Score =  108 bits (267), Expect = 5e-23
 Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 20/193 (10%)

Query: 1   MLEKIAEVQKKLSK--RIVEKEVRMVSKIAAVDVSYKGNKARVALVICSFPDCKVLKTKV 58
           +LE + ++Q  +SK  +I    +  V KI  VD++YKGN    ++ +    +      K 
Sbjct: 6   LLEFLEKLQFLISKNVKISHYGIENVKKICGVDIAYKGNLG-FSVGVSMDINSGDYNYKS 64

Query: 59  LETEVSFPYIPTFFFLRETRPILLVTKGEEFDVLIVEGHGKAHPRKYGLASHIGLILGKP 118
              EV+FPYIP F F+RE   ++   +G +  +L+V+GHG AHPRK G+A+ IG++L  P
Sbjct: 65  YVGEVNFPYIPGFLFMREAPLMIKAIEGLDCHLLLVDGHGIAHPRKSGIAAVIGVLLDFP 124

Query: 119 TIGVAKKLLRGTPENSYR-------------KVGKAYVSVGNMITLKDAVRIIEKLLDGG 165
           TIGVAK  L G   N                K G+ + S GN + L+D + + ++    G
Sbjct: 125 TIGVAKSRLTGDLVNESEITYVYLNGEKVGVKFGRYFYSPGNKVDLQDCIELGKR----G 180

Query: 166 YPKPLKLADKLSK 178
           YPK LK+AD L+K
Sbjct: 181 YPKVLKIADMLTK 193


>gi|11497746 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7450237|pir||A69266 conserved hypothetical protein
           AF0129 - Archaeoglobus fulgidus
           >gi|2650516|gb|AAB91100.1| (AE001097) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 221
           
 Score = 99.8 bits (245), Expect = 2e-20
 Identities = 63/203 (31%), Positives = 111/203 (54%), Gaps = 26/203 (12%)

Query: 2   LEKIAEVQKKLSKRIVEKEVRMVSK---IAAVDVSYKGNKARVALVICSFPDCKVLKTKV 58
           LE++  +Q+++S+ +V +++  + +   +  VD ++  ++     V  +FP+ +V+   V
Sbjct: 6   LEELRRIQEEMSRSVVLEDLIPLEELEYVVGVDQAFISDEVVSCAVKLTFPELEVVDKAV 65

Query: 59  LETEVSFPYIPTFFFLRETRPILLVTKG--EEFDVLIVEGHGKAHPRKYGLASHIGLILG 116
              +V+FPYIPTF   RE  P +   KG  ++   ++V+G G AHPR+ GLA++I L L 
Sbjct: 66  RVEKVTFPYIPTFLMFREGEPAVNAVKGLVDDRAAIMVDGSGIAHPRRCGLATYIALKLR 125

Query: 117 KPTIGVAKK---------------LLRGTPENSY-----RKVGKAYVSVGNMITLKDAVR 156
           KPT+G+ KK               LL G+    Y     R+    ++S G+ I+   A+ 
Sbjct: 126 KPTVGITKKRLFGEMVEVEDGLWRLLDGSETIGYALKSCRRCKPIFISPGSYISPDSALE 185

Query: 157 IIEKLLDG-GYPKPLKLADKLSK 178
           +  K L G   P+P+++ADKL+K
Sbjct: 186 LTRKCLKGYKLPEPIRIADKLTK 208


>emb|CAC11602.1| (AL445064) endonuclease V related protein [Thermoplasma
           acidophilum]
           Length = 323
           
 Score = 97.9 bits (240), Expect = 7e-20
 Identities = 66/198 (33%), Positives = 105/198 (52%), Gaps = 21/198 (10%)

Query: 2   LEKIAEVQKKLSKRIVEKEVRMVSKIAAVDVSYKGNKARVALVICSFPDCKVLKTKVLET 61
           L K+ + Q+ ++++  E        +AA DVSY+  +A  ++VI    D   ++  V+  
Sbjct: 121 LRKMQQYQEYIARKYSESGAGEFRTVAAFDVSYEERRAFASMVI---QDGSTIEAYVISD 177

Query: 62  EVSFPYIPTFFFLRETRPILLVTKGEEFDVLIVEGHGKAHPRKYGLASHIGLILGKPTIG 121
            ++FPYIP +   RE R I  + +  + D+L+++G+G  HPR  GLA+H G++L + +IG
Sbjct: 178 GINFPYIPGYLAFREFRFIKKLYR--KADLLLIDGNGILHPRFAGLATHAGVLLDRASIG 235

Query: 122 VAKKLLRGTPENSY-----RKVG-----KAYVSVGNMITLKDAVRIIEKLLDGGYPKPLK 171
           VAK L R T          R VG        VS GN I +  +   + K+ +  YP PLK
Sbjct: 236 VAKHLTRSTRHQDIIYMQDRPVGVMIRKNMIVSPGNFIDVNGSADTVRKMWNDRYPWPLK 295

Query: 172 LADKLSK------GKISE 183
           LA +LS       G++SE
Sbjct: 296 LAHQLSTRHAETGGRVSE 313


>pir||C72747 probable endonuclease V APE0506 - Aeropyrum pernix (strain K1)
           >gi|5104155|dbj|BAA79471.1| (AP000059) 218aa long
           hypothetical endonuclease V [Aeropyrum pernix]
           Length = 218
           
 Score = 89.3 bits (218), Expect = 3e-17
 Identities = 62/172 (36%), Positives = 88/172 (51%), Gaps = 23/172 (13%)

Query: 30  VDVSY--KGNKARVALVICSFPDCKVLKTKVLETEVSFPYIPTFFFLRETRPIL--LVTK 85
           +D SY  K      A V+ S    + +  +V  + V  PYIP     RE   +       
Sbjct: 4   LDASYSAKDGVGVGAAVLISLETLEPVDCRVYISRVCIPYIPGLLAFRELAVMAPAAAAL 63

Query: 86  GEEFDVLIVEGHGKAHPRKYGLASHIGLILGKPTIGVAKKLLRGT----PENSY------ 135
             E DV++V+GHG AHPR++G+ASH+G+IL +P+IGVAKK L GT    P   Y      
Sbjct: 64  SAEADVVMVDGHGIAHPRRFGIASHVGVILERPSIGVAKKKLVGTLVEGPGGMYVVQDGE 123

Query: 136 -------RKVGKAYVSVGNMITLKDAVRIIEKLL--DGGYPKPLKLADKLSK 178
                   +  + YVS G+ ITL++A  I    +   G  P+P +LAD +SK
Sbjct: 124 RLAIVLGTRPREVYVSPGHRITLEEAASIARATIRPGGWMPEPTRLADVISK 175


>gb|AAF33502.1| (AF170176) 95% identity over 218 of 233 amino acids with E. coli
           endonuclease V (NFI) (SW:P32679) [Salmonella typhimurium
           LT2]
           Length = 223
           
 Score = 87.0 bits (212), Expect = 1e-16
 Identities = 53/182 (29%), Positives = 91/182 (49%), Gaps = 28/182 (15%)

Query: 27  IAAVDVSYK--GNKARVALVICSFPDCKVLKTKVLETEVSFPYIPTFFFLRETRPILLVT 84
           I   DV ++  G   R A+V+  +P  ++++ KV     + PYIP F   RE   +L   
Sbjct: 31  IGGADVGFEQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAW 90

Query: 85  K--GEEFDVLIVEGHGKAHPRKYGLASHIGLILGKPTIGVAKKLLRGTPE---------- 132
           +   ++ D+L V+GHG +HPR+ G+ASH GL++  PTIGVAKK L G  E          
Sbjct: 91  EQLSQKPDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSAEPGALS 150

Query: 133 -------------NSYRKVGKAYVSVGNMITLKDAVRIIEKLLDG-GYPKPLKLADKLSK 178
                         S  +    +++ G+ ++   A+  +++ + G   P+P + AD ++ 
Sbjct: 151 PLMDKGEQLAWVWRSKARCNPLFIATGHRVSTDSALAWVQRCMKGYRLPEPTRWADAVAS 210

Query: 179 GK 180
           G+
Sbjct: 211 GR 212


>pir||B72202 endonuclease V - Thermotoga maritima (strain MSB8)
           >gi|4982450|gb|AAD36927.1|AE001823_9 (AE001823)
           endonuclease V [Thermotoga maritima]
           Length = 225
           
 Score = 85.8 bits (209), Expect = 3e-16
 Identities = 76/216 (35%), Positives = 110/216 (50%), Gaps = 45/216 (20%)

Query: 3   EKIAEVQKKLSKRI----VEKEVRMVSKIAAVDVSYKGNKARVA-LVICSFPDCKVLKTK 57
           E+  +VQ +L K+I     E E   V   A VD+S+ G +  +A +V+  +P  K+L+  
Sbjct: 14  EEAIKVQNELRKKIKLTPYEGEPEYV---AGVDLSFPGKEEGLAVIVVLEYPSFKILEVV 70

Query: 58  VLETEVSFPYIPTFFFLRETRPIL-----LVTKGEEFDVLIVEGHGKAHPRKYGLASHIG 112
               E++FPYIP     RE    L     L TK    DV++ +G G AHPRK G+ASH+G
Sbjct: 71  SERGEITFPYIPGLLAFREGPLFLKAWEKLRTKP---DVVVFDGQGLAHPRKLGIASHMG 127

Query: 113 LILGKPTIGVAKKLLRGT---PEN-----SY-------------RKVGKA--YVSVGNMI 149
           L +  PTIGVAK  L GT   PE+     SY              K G A  +VS G+++
Sbjct: 128 LFIEIPTIGVAKSRLYGTFKMPEDKRCSWSYLYDGEEIIGCVIRTKEGSAPIFVSPGHLM 187

Query: 150 TLKDAVRIIEKLLDGG--YPKPLKLA----DKLSKG 179
            ++ + R+I+     G   P+P +LA     +L KG
Sbjct: 188 DVESSKRLIKAFTLPGRRIPEPTRLAHIYTQRLKKG 223


>pir||A82625 endonuclease V (deoxyinosine 3'endonuclease) XF1892 [imported] -
           Xylella fastidiosa (strain 9a5c)
           >gi|9106985|gb|AAF84698.1|AE004009_5 (AE004009)
           endonuclease V (deoxyinosine 3'endonuclease) [Xylella
           fastidiosa]
           Length = 254
           
 Score = 85.8 bits (209), Expect = 3e-16
 Identities = 68/215 (31%), Positives = 112/215 (51%), Gaps = 32/215 (14%)

Query: 8   VQKKLSKRIVEKE-VRMVSK---IAAVDVSYK--GNKARVALVICSFPDCKVLKTKVLET 61
           +Q  +++RIV K+ + ++S+   +A  DV ++  G   R A V+ +  D K+L+T V+  
Sbjct: 38  LQSDMAERIVLKDDLNLLSEPTLLAGFDVGFEDEGRTTRAAAVLMNACDLKLLETHVVRV 97

Query: 62  EVSFPYIPTFFFLRETRPIL-LVTKGEEFDVLI-VEGHGKAHPRKYGLASHIGLILGKPT 119
             S PY+P     RE   +L  +T+      L+ V+GHG AHPR+ G+A+H GL+   P 
Sbjct: 98  PTSMPYVPGLLSFRELPALLQALTQLSRIPALVFVDGHGIAHPRRLGIAAHFGLVTNLPC 157

Query: 120 IGVAKKLLRG---TPENSY----------RKVGKA----------YVSVGNMITLKDAVR 156
           IGVAKK L G    P  ++           +VG A           +S G+ I+L  A+ 
Sbjct: 158 IGVAKKRLVGDFVEPGTAFGEHTPILLHGTQVGWALRSKIRCKPLMISPGHKISLHSALT 217

Query: 157 IIEKLLDG-GYPKPLKLADKLSKGKISEDENTLPS 190
             ++ L+G   P+P + AD+L+  +  +  + LPS
Sbjct: 218 WTQRCLNGYRLPEPTRQADRLASRRGQKIVSDLPS 252


>pir||A65207 hypothetical 24.9 kD protein in heme-hupa intergenic region -
           Escherichia coli (strain K-12) >gi|409792|gb|AAC43096.1|
           (U00006) similar to O.berteriana mitochon. protein
           involved in cytochrome c biogenesis [Escherichia coli]
           >gi|1790431|gb|AAC76972.1| (AE000473) endonuclease V
           (deoxyinosine 3'endoduclease) [Escherichia coli K12]
           Length = 225
           
 Score = 85.0 bits (207), Expect = 5e-16
 Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 28/179 (15%)

Query: 27  IAAVDVSYK--GNKARVALVICSFPDCKVLKTKVLETEVSFPYIPTFFFLRETRPILLVT 84
           IA  DV ++  G   R A+V+  +P  ++++ KV     + PYIP F   RE   +L   
Sbjct: 33  IAGADVGFEQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAW 92

Query: 85  K--GEEFDVLIVEGHGKAHPRKYGLASHIGLILGKPTIGVAKKLLRGTPE---------- 132
           +   ++ D++ V+GHG +HPR+ G+ASH GL++  PTIGVAKK L G  E          
Sbjct: 93  EMLSQKPDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSSEPGALA 152

Query: 133 -------------NSYRKVGKAYVSVGNMITLKDAVRIIEKLLDG-GYPKPLKLADKLS 177
                         S  +    +++ G+ +++  A+  +++ + G   P+P + AD ++
Sbjct: 153 PLMDKGEQLAWVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVA 211


>sp|P32679|NFI_ECOLI ENDONUCLEASE V (DEOXYINOSINE 3'ENDONUCLEASE)
           Length = 223
           
 Score = 85.0 bits (207), Expect = 5e-16
 Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 28/179 (15%)

Query: 27  IAAVDVSYK--GNKARVALVICSFPDCKVLKTKVLETEVSFPYIPTFFFLRETRPILLVT 84
           IA  DV ++  G   R A+V+  +P  ++++ KV     + PYIP F   RE   +L   
Sbjct: 31  IAGADVGFEQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAW 90

Query: 85  K--GEEFDVLIVEGHGKAHPRKYGLASHIGLILGKPTIGVAKKLLRGTPE---------- 132
           +   ++ D++ V+GHG +HPR+ G+ASH GL++  PTIGVAKK L G  E          
Sbjct: 91  EMLSQKPDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSSEPGALA 150

Query: 133 -------------NSYRKVGKAYVSVGNMITLKDAVRIIEKLLDG-GYPKPLKLADKLS 177
                         S  +    +++ G+ +++  A+  +++ + G   P+P + AD ++
Sbjct: 151 PLMDKGEQLAWVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVA 209


>pir||D70349 conserved hypothetical protein aq_548 - Aquifex aeolicus
           >gi|2983195|gb|AAC06795.1| (AE000695) hypothetical
           protein [Aquifex aeolicus]
           Length = 188
           
 Score = 78.0 bits (189), Expect = 7e-14
 Identities = 57/165 (34%), Positives = 80/165 (47%), Gaps = 27/165 (16%)

Query: 38  KARVALVICSFPDCKVLKTKVLETEVSFPYIPTFFFLRETRPILLV---TKGEEFDVLIV 94
           +A  +LV+      K +   V++  V FPYIPTF   RE  P+LL    T   + DV  +
Sbjct: 14  RAWASLVVVELKTLKPVYQHVVKDIVDFPYIPTFLAFREM-PLLLKLYETAKVKPDVYFI 72

Query: 95  EGHGKAHPRKYGLASHIGLILGKPTIGVAKKLLRGTPEN--------SYRK--------- 137
           +G G AHPR  G+ASH G+  G+ T+GVAK  L G  +         +Y K         
Sbjct: 73  DGQGIAHPRGCGIASHFGVETGEVTVGVAKSKLFGYAKEPAPQRGSYTYLKYKGKIIGAV 132

Query: 138 ------VGKAYVSVGNMITLKDAVRIIEKLLDGGYPKPLKLADKL 176
                     YVSVG+ I+LK A+ ++ K      P+P +LA  L
Sbjct: 133 VRTKDNTAPVYVSVGHRISLKTAIDLVLKTSKYRVPEPTRLAHNL 177


>pir||T35251 probable endonuclease - Streptomyces coelicolor
           >gi|4584473|emb|CAB40676.1| (AL049587) putative
           endonuclease [Streptomyces coelicolor A3(2)]
           Length = 233
           
 Score = 71.8 bits (173), Expect = 5e-12
 Identities = 50/167 (29%), Positives = 77/167 (45%), Gaps = 13/167 (7%)

Query: 3   EKIAEVQKKLSKRIVEKEVRM---VSKIAAVDVSYKGNKARVAL--VICSFPDCKVLKTK 57
           E+   VQ +L  R+V  E        ++  VDV+Y   +  VA   V+       V+   
Sbjct: 17  ERARAVQDELRARVVLDEPGPPPGTGRVTGVDVAYDDERDVVAAAAVVLDAGTLAVVAEA 76

Query: 58  VLETEVSFPYIPTFFFLRETRPILLVTKGEEFD--VLIVEGHGKAHPRKYGLASHIGLIL 115
                +SFPY+P     RE   +L   +       +++ +G+G AHPR++GLASH+G++ 
Sbjct: 77  TAVGRISFPYVPGLLAFREIPTVLAALEALPCPPGLVVCDGYGLAHPRRFGLASHLGVLT 136

Query: 116 GKPTIGVAKKLLR------GTPENSYRKVGKAYVSVGNMITLKDAVR 156
           G PTIGVAK           TP  S   +      VG  +  +D V+
Sbjct: 137 GLPTIGVAKNPFTFTHDDPDTPRGSTSPLLAGAEEVGRAVRTRDGVK 183


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.138    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70129166
Number of Sequences: 2977
Number of extensions: 2890777
Number of successful extensions: 5880
Number of sequences better than 1.0e-10: 13
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5858
Number of HSP's gapped (non-prelim): 13
length of query: 194
length of database: 189,106,746
effective HSP length: 57
effective length of query: 137
effective length of database: 154,992,987
effective search space: 21234039219
effective search space used: 21234039219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)