BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0917 (PAB0917) DE:Hypothetical protein
(212 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75049 hypothetical protein PAB0917 - Pyrococcus abyssi (st... 421 e-117
pir||E71111 hypothetical protein PH0660 - Pyrococcus horikoshii ... 357 7e-98
gi|11499689 conserved hypothetical protein [Archaeoglobus fulgid... 171 6e-42
emb|CAC12192.1| (AL445066) conserved hypothetical protein [Therm... 115 4e-25
gb|AAK41229.1| Hypothetical protein [Sulfolobus solfataricus] 108 4e-23
gb|AAG20266.1| (AE005101) Vng2126c [Halobacterium sp. NRC-1] 95 7e-19
pir||C72517 hypothetical protein APE2112 - Aeropyrum pernix (str... 92 5e-18
sp|Q60365|Y056_METJA HYPOTHETICAL PROTEIN MJ0056 >gi|2128102|pir... 92 6e-18
pir||B69067 conserved hypothetical protein MTH1500 - Methanobact... 88 7e-17
>pir||C75049 hypothetical protein PAB0917 - Pyrococcus abyssi (strain Orsay)
>gi|5458801|emb|CAB50288.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 212
Score = 421 bits (1072), Expect = e-117
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MKMKTLFLLIKLAKMGAIGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRK 60
MKMKTLFLLIKLAKMGAIGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRK
Sbjct: 1 MKMKTLFLLIKLAKMGAIGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRK 60
Query: 61 GTLVELTEKGINLLEKLYEEISTALYSGFIVGEVISGIGEGAYYVRQYAPLIREYLGFDP 120
GTLVELTEKGINLLEKLYEEISTALYSGFIVGEVISGIGEGAYYVRQYAPLIREYLGFDP
Sbjct: 61 GTLVELTEKGINLLEKLYEEISTALYSGFIVGEVISGIGEGAYYVRQYAPLIREYLGFDP 120
Query: 121 YPGTLNVRVLFPKTIFDALCTARPIIIPGFTRNGRTFGDVRAYRVRIDGIEGAIVIPSRT 180
YPGTLNVRVLFPKTIFDALCTARPIIIPGFTRNGRTFGDVRAYRVRIDGIEGAIVIPSRT
Sbjct: 121 YPGTLNVRVLFPKTIFDALCTARPIIIPGFTRNGRTFGDVRAYRVRIDGIEGAIVIPSRT 180
Query: 181 VHPPKIAEIIAPVKLRDALNLKDGDKVRIEVV 212
VHPPKIAEIIAPVKLRDALNLKDGDKVRIEVV
Sbjct: 181 VHPPKIAEIIAPVKLRDALNLKDGDKVRIEVV 212
>pir||E71111 hypothetical protein PH0660 - Pyrococcus horikoshii
>gi|3257068|dbj|BAA29751.1| (AP000003) 212aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 212
Score = 357 bits (906), Expect = 7e-98
Identities = 173/212 (81%), Positives = 193/212 (90%)
Query: 1 MKMKTLFLLIKLAKMGAIGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRK 60
MK+KTL LLI L K GAIG +IT+T+RE+S+ELDVSPQT LRWLEEL+E GYI K ESR+
Sbjct: 1 MKLKTLLLLIDLGKRGAIGGKITITLREISKELDVSPQTTLRWLEELEELGYIEKEESRR 60
Query: 61 GTLVELTEKGINLLEKLYEEISTALYSGFIVGEVISGIGEGAYYVRQYAPLIREYLGFDP 120
GT V +TEKGI LLEKLYE+IS ALYSG IVGEVISGIGEGAYYVRQYAP IREYLGFDP
Sbjct: 61 GTSVMITEKGIRLLEKLYEDISIALYSGVIVGEVISGIGEGAYYVRQYAPFIREYLGFDP 120
Query: 121 YPGTLNVRVLFPKTIFDALCTARPIIIPGFTRNGRTFGDVRAYRVRIDGIEGAIVIPSRT 180
YPGTLNV+V+FPKTIFDALCT+RPIIIPGF +NGRTFGDVRAYR++IDGIEGAIVIPSRT
Sbjct: 121 YPGTLNVKVIFPKTIFDALCTSRPIIIPGFKKNGRTFGDVRAYRIKIDGIEGAIVIPSRT 180
Query: 181 VHPPKIAEIIAPVKLRDALNLKDGDKVRIEVV 212
VHPPKIAE+IAPV LR LNL+DGDKVRI+V+
Sbjct: 181 VHPPKIAEVIAPVNLRKTLNLQDGDKVRIKVL 212
>gi|11499689 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430118|pir||B69513 conserved hypothetical protein
AF2106 - Archaeoglobus fulgidus
>gi|2648419|gb|AAB89142.1| (AE000958) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 233
Score = 171 bits (429), Expect = 6e-42
Identities = 99/213 (46%), Positives = 133/213 (61%), Gaps = 6/213 (2%)
Query: 6 LFLLIKLAKMGAIGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRKGTLVE 65
L +L LA M A K + ++ +EL+ + S QT R L+EL+++G I + ++ G V
Sbjct: 20 LEVLKALAMMNATRKVVKISSKELAEHIGQSLQTAARKLKELEDEGLIDRTLTKDGQFVV 79
Query: 66 LTEKGINLLEKLYEEISTALYSGFIV---GEVISGIGEGAYYV--RQYAPLIREYLGFDP 120
+TEKG LL K Y + + GEV SG+GEG YYV Y RE LGFDP
Sbjct: 80 ITEKGKQLLYKEYMDYKKIFDDEGTIKIKGEVFSGVGEGRYYVSLEGYRKQFREKLGFDP 139
Query: 121 YPGTLNVRVLFPKTIFDA-LCTARPIIIPGFTRNGRTFGDVRAYRVRIDGIEGAIVIPSR 179
YPGTLN+R+ + F L R I+I GF+ RTFG+V+A++ RI+GIEGAIVIP R
Sbjct: 140 YPGTLNLRIPKEEMYFRRRLDEERGILIEGFSTEDRTFGEVKAFKCRINGIEGAIVIPKR 199
Query: 180 TVHPPKIAEIIAPVKLRDALNLKDGDKVRIEVV 212
T +P +I E+I+PVKLRD L LKDGD V +EV+
Sbjct: 200 THYPAEILEVISPVKLRDKLGLKDGDFVEVEVI 232
>emb|CAC12192.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 220
Score = 115 bits (285), Expect = 4e-25
Identities = 73/209 (34%), Positives = 118/209 (55%), Gaps = 11/209 (5%)
Query: 11 KLAKMGAIGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRKGTLVELTEKG 70
K+ + +T +L+ L +S Q+ R + +L++ GYI + +++G ++ +TEKG
Sbjct: 13 KIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKG 72
Query: 71 INLLEKLYEEISTAL---YSGFIVGEVISGIGEGAYYV--RQYAPLIREYLGFDPYPGTL 125
+++L + ++S L + I G V SG+GEG YYV +QY +E LG PY GTL
Sbjct: 73 LDVLYTEFADLSRILAIKNNVVITGTVTSGMGEGRYYVARKQYIIQFQEKLGIIPYLGTL 132
Query: 126 NVRV---LFPKTIFDALCTARPIIIPGFTRNGRTFGDVRAYRVRIDGIEGAIVIPSRTVH 182
N++V P+ + R I I GF RTFG V+A+ +I I +++P RTV+
Sbjct: 133 NIKVDQASLPE--LRKIRGFRGIHIEGFKTEDRTFGSVKAFPAKIQNIPCFVIMPERTVY 190
Query: 183 PPKIAEIIAPVKLRDALNLKDGDKVRIEV 211
+ EII+ LR+ +NL DGD+V +EV
Sbjct: 191 -TDVIEIISDKYLREEINLHDGDRVSVEV 218
>gb|AAK41229.1| Hypothetical protein [Sulfolobus solfataricus]
Length = 175
Score = 108 bits (268), Expect = 4e-23
Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 10/163 (6%)
Query: 58 SRKGTLVELTEKGINLLEKLYEEISTA---LYSGFIVGEVISGIGEGAYYVRQ--YAPLI 112
S++G ++ LTE+G L + A L+S I G ++SG+GEG ++ Y I
Sbjct: 12 SKEGEIIRLTEEGERFLSSCLSSLKDAILSLHSIEIKGNIVSGLGEGKIFLSMEYYKSQI 71
Query: 113 REYLGFDPYPGTLNVRVLFPKTIFD---ALCTARPIIIPGFTRNGRTFGDVRAYRVRIDG 169
+ +GFDP+PGTLN+ V++ K + L ++ +++P + + R G V+ Y I+
Sbjct: 72 NKIMGFDPFPGTLNI-VIYDKASLENRLLLDSSPSLMVPEYKQKDRVLGAVKLYPAAINK 130
Query: 170 IE-GAIVIPSRTVHPPKIAEIIAPVKLRDALNLKDGDKVRIEV 211
+ A+VIP RT HP + EII+P LR+ LNLKDGD+V IEV
Sbjct: 131 LTPAAVVIPLRTTHPKSVIEIISPFHLREKLNLKDGDEVTIEV 173
>gb|AAG20266.1| (AE005101) Vng2126c [Halobacterium sp. NRC-1]
Length = 242
Score = 94.8 bits (232), Expect = 7e-19
Identities = 76/221 (34%), Positives = 109/221 (48%), Gaps = 19/221 (8%)
Query: 6 LFLLIKLAKMGAIGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRKGTLVE 65
L +L LA GA E+ V+ +L+ LD S QT R L+ L + ++ + G +
Sbjct: 24 LAVLKLLALDGAHRGEVKVSCGDLASRLDASSQTASRRLQALDDADHVTRDLVSDGQWIT 83
Query: 66 LTEKGINLLEKLYEEISTALYSG---FIVGEVISGIGEGAYYV------RQYAPLIREYL 116
+T+ G + L+ YE+ + G V SG+GEG +Y+ RQ+A E L
Sbjct: 84 VTDAGRHALKHEYEDYRRIFEDPGELALAGTVTSGMGEGRHYISLPGYNRQFA----EKL 139
Query: 117 GFDPYPGTLNVRVLFPKTIFDALCTARP-IIIPGFTRNGRTFGDVRAYRVRIDG----IE 171
G++PYPGTLNV + A A + I + RT+G Y + G +
Sbjct: 140 GYEPYPGTLNVDLPPDGQRARAGIQALDGVDIDAWEDEDRTYGSATCYACTVVGDGTDFD 199
Query: 172 GA-IVIPSRTVHPPKIAEIIAPVKLRDALNLKDGDKVRIEV 211
GA ++IP RT H EIIAPVKLR+ L L D D+V I V
Sbjct: 200 GAHVIIPDRTHHDDDQLEIIAPVKLRERLGLLDDDEVTIRV 240
>pir||C72517 hypothetical protein APE2112 - Aeropyrum pernix (strain K1)
>gi|5105811|dbj|BAA81123.1| (AP000063) 194aa long
hypothetical protein [Aeropyrum pernix]
Length = 194
Score = 92.1 bits (225), Expect = 5e-18
Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Query: 56 RESRKGTLVELTEKGINLLEKLYEEISTALYSGFIVGEVISGIGEGAYYVRQYAPLIREY 115
RE G+ + + + L E + AL G G V SG+G G++YV YA +R
Sbjct: 34 RERAPGSAEDARDNYWQVKPNLGERCARALDCGVFEGTVFSGLGHGSFYVSIYARNLRRA 93
Query: 116 LGFDPYPGTLNVRV-LFPKTIFDALCTARPIIIPGFTRNGRTFGDVRAYRVRID-GIEGA 173
LG+ PYPGTLN+RV + + + AR + I G V A+ V I+ G+ G
Sbjct: 94 LGYTPYPGTLNLRVGDAAERLAGCIERARGVRIEPPPIPGERLASVLAFPVEIEGGVRGH 153
Query: 174 IVIPSRTVHPPKIAEIIAPVKLRDALNLKDGDKVRIEVV 212
IV P TV+ + EI+A V LRD L + DGDKVR ++
Sbjct: 154 IVRPEITVYKGDVVEIVADVYLRDVLKISDGDKVRFRLL 192
>sp|Q60365|Y056_METJA HYPOTHETICAL PROTEIN MJ0056 >gi|2128102|pir||H64306 conserved
hypothetical protein MJ0056 - Methanococcus jannaschii
>gi|1590850|gb|AAB98036.1| (U67463) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 136
Score = 91.7 bits (224), Expect = 6e-18
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 10/126 (7%)
Query: 90 IVGEVISGIGEGAYYVR--QYAPLIREYLGFDPYPGTLNVRVLFPKTIFDALCTARPIII 147
I GEV+SG+GEG Y++ Y + ++ LGF+PY GTLN+++ FD + + I
Sbjct: 7 IEGEVVSGLGEGRYFLSLPPYKEIFKKILGFEPYEGTLNLKL---DREFD-INKFKYIET 62
Query: 148 PGFTRNGRTFGDVRAYRVRI----DGIEGAIVIPSRTVHPPKIAEIIAPVKLRDALNLKD 203
F NG+ F V+ ++I I+GAIV+P +T H +I EIIAP+KLR+ NLKD
Sbjct: 63 EDFEFNGKRFFGVKVLPIKILIGNKKIDGAIVVPKKTYHSSEIIEIIAPMKLREQFNLKD 122
Query: 204 GDKVRI 209
GD ++I
Sbjct: 123 GDVIKI 128
>pir||B69067 conserved hypothetical protein MTH1500 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622617|gb|AAB85975.1| (AE000910) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 122
Score = 88.2 bits (215), Expect = 7e-17
Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
Query: 96 SGIGEGAYYVRQ--YAPLIREYLGFDPYPGTLNVRVLFPKTIFDALCTARPIIIPGFTRN 153
SG GEGAY++ + Y RE LGFDP+PGTLN+ V P+ I + + P+I +
Sbjct: 3 SGFGEGAYFITRSVYRDQFREKLGFDPFPGTLNIEVGDPE-IVERIREGAPVI-----QG 56
Query: 154 GRTFGDVRAYRVRIDGI-EGAIVIPSRTVHPPKIAEIIAPVKLRDALNLKDGDKVRIEV 211
G FGDV + ++G+ EGAI+ P +T H E +APV LR L L+DGD V +++
Sbjct: 57 GGGFGDVLYVKALLNGVVEGAILFPLKTHHRQGCLEFVAPVNLRKTLKLRDGDTVSLDI 115
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.143 0.408
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79132328
Number of Sequences: 2977
Number of extensions: 3438406
Number of successful extensions: 8408
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8389
Number of HSP's gapped (non-prelim): 9
length of query: 212
length of database: 189,106,746
effective HSP length: 53
effective length of query: 159
effective length of database: 157,386,935
effective search space: 25024522665
effective search space used: 25024522665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)