BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0920 1344922 1345530 203 !not a gene!
         (203 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71110 hypothetical protein PH0651 - Pyrococcus horikoshii ...   158  4e-38

>pir||D71110 hypothetical protein PH0651 - Pyrococcus horikoshii
           >gi|3257059|dbj|BAA29742.1| (AP000003) 102aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 102
           
 Score =  158 bits (396), Expect = 4e-38
 Identities = 80/100 (80%), Positives = 87/100 (87%)

Query: 66  ITRSLGGMNIAREFKVVVLPEPVPPATRILAGLTPSPSTSNHKKAATSELNVLNLIRSII 125
           IT SLGGMNIA+EF VVVLPEPVPPATR+ AGLTP PST + + AATSE  VLN I+SII
Sbjct: 3   ITLSLGGMNIAKEFNVVVLPEPVPPATRMFAGLTPRPSTRSQRNAATSEFKVLNFIKSII 62

Query: 126 VNGSFLNFLIVNVGPSKLIGGKVALTLLPSGSLASRRGFC 165
           V+GSFLNFLIV VGPS+LIGG VALTLLPSGSLASR GFC
Sbjct: 63  VSGSFLNFLIVIVGPSRLIGGNVALTLLPSGSLASRSGFC 102


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.135    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69532228
Number of Sequences: 2977
Number of extensions: 2699829
Number of successful extensions: 8193
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8192
Number of HSP's gapped (non-prelim): 1
length of query: 203
length of database: 189,106,746
effective HSP length: 56
effective length of query: 147
effective length of database: 155,591,474
effective search space: 22871946678
effective search space used: 22871946678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)