BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0921 (PAB0921) DE:Hypothetical protein
         (113 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75050 hypothetical protein PAB0921 - Pyrococcus abyssi (st...   237  4e-62
pir||H71109 hypothetical protein PH0647 - Pyrococcus horikoshii ...   198  3e-50
pir||E69225 hypothetical protein MTH937 - Methanobacterium therm...    99  2e-20

>pir||E75050 hypothetical protein PAB0921 - Pyrococcus abyssi (strain Orsay)
           >gi|5458811|emb|CAB50298.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 113
           
 Score =  237 bits (598), Expect = 4e-62
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MERLVIKVIDIKGKCPIYKIGDKIIIEGPEVKLDETDALCIHAFASLLPYIIAFRKGVKP 60
           MERLVIKVIDIKGKCPIYKIGDKIIIEGPEVKLDETDALCIHAFASLLPYIIAFRKGVKP
Sbjct: 1   MERLVIKVIDIKGKCPIYKIGDKIIIEGPEVKLDETDALCIHAFASLLPYIIAFRKGVKP 60

Query: 61  SEIGLGDEKKAYVHCPDPGPPYTPGGTVTFEITVVRDEAEKGLENSEGGHRGS 113
           SEIGLGDEKKAYVHCPDPGPPYTPGGTVTFEITVVRDEAEKGLENSEGGHRGS
Sbjct: 61  SEIGLGDEKKAYVHCPDPGPPYTPGGTVTFEITVVRDEAEKGLENSEGGHRGS 113


>pir||H71109 hypothetical protein PH0647 - Pyrococcus horikoshii
           >gi|3257055|dbj|BAA29738.1| (AP000003) 110aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 110
           
 Score =  198 bits (497), Expect = 3e-50
 Identities = 89/110 (80%), Positives = 101/110 (90%)

Query: 1   MERLVIKVIDIKGKCPIYKIGDKIIIEGPEVKLDETDALCIHAFASLLPYIIAFRKGVKP 60
           MERL+IKVI+I+GKCP++K+GDKI+IEGPEVKL+ETDALCIHAF+SLLPYIIAFRKGVKP
Sbjct: 1   MERLIIKVIEIRGKCPVFKVGDKIVIEGPEVKLNETDALCIHAFSSLLPYIIAFRKGVKP 60

Query: 61  SEIGLGDEKKAYVHCPDPGPPYTPGGTVTFEITVVRDEAEKGLENSEGGH 110
            EIGLG E KAY+ CPDPGPPYTPGGTV FE+TVVRDE EK L NSE G+
Sbjct: 61  KEIGLGTENKAYIQCPDPGPPYTPGGTVVFEVTVVRDETEKSLGNSERGN 110


>pir||E69225 hypothetical protein MTH937 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622035|gb|AAB85435.1| (AE000868)
           unknown [Methanobacterium thermoautotrophicum]
           Length = 100
           
 Score = 98.7 bits (242), Expect = 2e-20
 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 1   MERLVIKVIDIKGKCPIYKIGDKIIIEGPEVKLDETDALCIHAFASLLPYIIAFRKGVKP 60
           M+ L I+V +I+GKCP+++ GD+I ++  E+ L+ TDALC HA +++L Y     +   P
Sbjct: 2   MDVLEIRVHEIRGKCPVHREGDRITVDDHEIDLERTDALCTHALSTILHYTTILERNWCP 61

Query: 61  SEIGL---GDEKKAYVHCPDPGPPYTPGGTVTFEITVVR 96
            E+GL   GDE+ AY+ C DPG PYT GGTV F++  +R
Sbjct: 62  VELGLTVDGDEEHAYMQCVDPGEPYTDGGTVIFQVRGLR 100


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.144    0.429 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49213002
Number of Sequences: 2977
Number of extensions: 2138963
Number of successful extensions: 4227
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4224
Number of HSP's gapped (non-prelim): 3
length of query: 113
length of database: 189,106,746
effective HSP length: 49
effective length of query: 64
effective length of database: 159,780,883
effective search space: 10225976512
effective search space used: 10225976512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 160 (66.7 bits)