BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0922 (PAB0922) DE:GTP-BINDING PROTEIN HOMOLOG
(355 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75050 GTP-binding protein homolog PAB0922 - Pyrococcus aby... 711 0.0
pir||F71109 probable GTP-binding protein - Pyrococcus horikoshii... 629 e-179
pir||G64482 hypothetical GTP-binding protein homolog - Methanoco... 223 2e-57
gb|AAK40894.1| GTP binding protein, hypothetical [Sulfolobus sol... 171 1e-41
emb|CAB57719.1| (Y18930) hypothetical gtp-binding protein [Sulfo... 171 1e-41
pir||E72764 probable GTP-binding protein APE0105 - Aeropyrum per... 167 2e-40
gb|AAF30346.1|AC019018_24 (AC019018) putative GTP-binding protei... 160 3e-38
gi|7019419 nucleolar GTPase [Homo sapiens] >gi|3334276|sp|Q13823... 151 1e-35
gi|11423270 nucleolar GTPase [Homo sapiens] 151 1e-35
pir||T24970 hypothetical protein T19A6.2a - Caenorhabditis elega... 150 3e-35
pir||T24972 hypothetical protein T19A6.2b - Caenorhabditis elega... 150 3e-35
pir||T23172 hypothetical protein K01C8.9 - Caenorhabditis elegan... 149 5e-35
gb|AAB09043.1| (U69600) testicular antigen [Mus musculus] 148 1e-34
gb|AAF57834.1| (AE003802) CG6501 gene product [Drosophila melano... 147 2e-34
pir||T39037 hypothetical gtp-binding protein associated - fissio... 143 3e-33
gb|AAF27009.1|AC016827_20 (AC016827) putative GTPase [Arabidopsi... 143 4e-33
gi|6324381 Ynr053cp [Saccharomyces cerevisiae] >gi|1730685|sp|P5... 135 7e-31
gi|9506611 hypothetical protein [Homo sapiens] >gi|7022755|dbj|B... 122 7e-27
gb|AAF55384.1| (AE003716) CG3983 gene product [Drosophila melano... 119 4e-26
pir||T40020 probable protein transport protein - fission yeast ... 119 6e-26
gi|7657048 putative nucleotide binding protein, estradiol-induce... 116 3e-25
gi|11435204 putative nucleotide binding protein, estradiol-induc... 116 4e-25
pir||B70180 conserved hypothetical protein BB0643 - Lyme disease... 114 1e-24
gi|6320842 Yer006wp [Saccharomyces cerevisiae] >gi|731436|sp|P40... 111 1e-23
pir||F69880 conserved hypothetical protein ylqF - Bacillus subti... 109 6e-23
dbj|BAA75361.1| (AB013365) YlqF [Bacillus halodurans] >gi|101750... 108 1e-22
pir||F72336 conserved hypothetical protein - Thermotoga maritima... 105 7e-22
sp|Q10190|YAWG_SCHPO HYPOTHETICAL GTP-BINDING PROTEIN C3F10.16C ... 105 7e-22
pir||E81941 hypothetical protein NMA0950 [imported] - Neisseria ... 104 2e-21
pir||C81165 conserved hypothetical protein NMB0739 [imported] - ... 104 2e-21
pir||E82449 conserved hypothetical protein VCA0528 [imported] - ... 96 6e-19
gi|6321339 Ygl099wp [Saccharomyces cerevisiae] >gi|1723894|sp|P5... 92 7e-18
gb|AAD15335.1| (AC004044) hypothetical protein [Arabidopsis thal... 91 2e-17
pir||S75087 hypothetical protein slr0267 - Synechocystis sp. (st... 89 6e-17
dbj|BAA92116.1| (AK002163) unnamed protein product [Homo sapiens] 72 1e-11
sp|O67749|ENGA_AQUAE PROBABLE GTP-BINDING PROTEIN ENGA >gi|74505... 71 1e-11
pir||S40612 myosin-related protein - slime mold (Physarum polyce... 69 6e-11
dbj|BAB14161.1| (AK022657) unnamed protein product [Homo sapiens] 69 6e-11
emb|CAB38462.1| (AL035632) /prediction=(method:""genefinder"", v... 69 8e-11
>pir||F75050 GTP-binding protein homolog PAB0922 - Pyrococcus abyssi (strain
Orsay) >gi|5458812|emb|CAB50299.1| (AJ248287)
GTP-BINDING PROTEIN HOMOLOG [Pyrococcus abyssi]
Length = 355
Score = 711 bits (1816), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MKQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPK 60
MKQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPK
Sbjct: 1 MKQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPK 60
Query: 61 EWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKTIDKDKVKVALIGYPNVGKSTII 120
EWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKTIDKDKVKVALIGYPNVGKSTII
Sbjct: 61 EWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKTIDKDKVKVALIGYPNVGKSTII 120
Query: 121 NVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELVIKGGFPADKIEE 180
NVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELVIKGGFPADKIEE
Sbjct: 121 NVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELVIKGGFPADKIEE 180
Query: 181 PVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEVDIEETARW 240
PVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEVDIEETARW
Sbjct: 181 PVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEVDIEETARW 240
Query: 241 FLREWQTGRFTLFSNDEEKKEEYIESFGEILEVIKQENLTEPRIILWKFRDLLEEYVGSE 300
FLREWQTGRFTLFSNDEEKKEEYIESFGEILEVIKQENLTEPRIILWKFRDLLEEYVGSE
Sbjct: 241 FLREWQTGRFTLFSNDEEKKEEYIESFGEILEVIKQENLTEPRIILWKFRDLLEEYVGSE 300
Query: 301 KRFGAIEVGDFTVAIATGFKKCPNAIKFIERITGKNVITSECFGKKWKGVVAILD 355
KRFGAIEVGDFTVAIATGFKKCPNAIKFIERITGKNVITSECFGKKWKGVVAILD
Sbjct: 301 KRFGAIEVGDFTVAIATGFKKCPNAIKFIERITGKNVITSECFGKKWKGVVAILD 355
>pir||F71109 probable GTP-binding protein - Pyrococcus horikoshii
>gi|3257053|dbj|BAA29736.1| (AP000003) 355aa long
hypothetical GTP-binding protein [Pyrococcus horikoshii]
Length = 355
Score = 629 bits (1606), Expect = e-179
Identities = 300/355 (84%), Positives = 340/355 (95%)
Query: 1 MKQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPK 60
MKQKKAW IVKEVI EADIVVEVVDARDPIGTRN+KLERMV+ESGKKLL+VMNKADLVPK
Sbjct: 1 MKQKKAWAIVKEVIEEADIVVEVVDARDPIGTRNKKLERMVLESGKKLLLVMNKADLVPK 60
Query: 61 EWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKTIDKDKVKVALIGYPNVGKSTII 120
EWAEEYK++SEIPV+FISARERKGTGILR+ELKK+AK I+K++VKVALIGYPNVGKSTII
Sbjct: 61 EWAEEYKRKSEIPVVFISARERKGTGILRRELKKIAKMINKERVKVALIGYPNVGKSTII 120
Query: 121 NVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELVIKGGFPADKIEE 180
NVLKGKH+VGTAPIPGYTKGK +IRLTK++WLLDTPGVVPIDDFDELVIKGGFPADKI E
Sbjct: 121 NVLKGKHSVGTAPIPGYTKGKQMIRLTKKIWLLDTPGVVPIDDFDELVIKGGFPADKIRE 180
Query: 181 PVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEVDIEETARW 240
PVKPALKLIRRILETRKEALTEKF+I EF DEEDILRKIGERRGIIREGG VDIEETARW
Sbjct: 181 PVKPALKLIRRILETRKEALTEKFNITEFEDEEDILRKIGERRGIIREGGVVDIEETARW 240
Query: 241 FLREWQTGRFTLFSNDEEKKEEYIESFGEILEVIKQENLTEPRIILWKFRDLLEEYVGSE 300
FLREWQTGRFTLFS +E+++EEYIESF EILE+IK++NLT+PR+I+WKF ++LE+Y+G+E
Sbjct: 241 FLREWQTGRFTLFSTEEKREEEYIESFDEILEIIKEQNLTDPRMIIWKFGNILEDYLGAE 300
Query: 301 KRFGAIEVGDFTVAIATGFKKCPNAIKFIERITGKNVITSECFGKKWKGVVAILD 355
+RFGAI+VG+F +AIATGFKKCPNAIKF+ERIT KN + +ECFGKKWKG+VAIL+
Sbjct: 301 RRFGAIKVGEFMIAIATGFKKCPNAIKFVERITRKNAVAAECFGKKWKGIVAILE 355
>pir||G64482 hypothetical GTP-binding protein homolog - Methanococcus jannaschii
>gi|1592105|gb|AAB99472.1| (U67587) hypothetical
GTP-binding protein (SP:P40010) [Methanococcus
jannaschii]
Length = 373
Score = 223 bits (563), Expect = 2e-57
Identities = 127/343 (37%), Positives = 203/343 (59%), Gaps = 4/343 (1%)
Query: 8 RIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKEWAEEYK 67
+IV ++I E D+++ V+DARDP TRNR+LE+ + GKKL+ V+NKADLVPK+ E++K
Sbjct: 15 KIVNKIIDECDVILLVLDARDPEMTRNRELEKKIKAKGKKLIYVLNKADLVPKDILEKWK 74
Query: 68 KRSEIPVIFISARERKGTGILRKELKKMAKTIDKDKVKVALIGYPNVGKSTIINVLKGKH 127
+ +F+SA+ R GT ILR+ +K+ K + K + KV ++GYPNVGKS+IIN L GK
Sbjct: 75 EVFGENTVFVSAKRRLGTKILREMIKQSLKEMGKKEGKVGIVGYPNVGKSSIINALTGKR 134
Query: 128 AVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELVIKGGFPADKIEEPVKPALK 187
T + G TKG+ +RLTK + L+DTPGV+ + D D+LVI G +K+E P+ PALK
Sbjct: 135 KALTGSVAGLTKGEQWVRLTKNIKLMDTPGVLEMRDEDDLVISGALRLEKVENPIPPALK 194
Query: 188 LIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEVDIEETARWFLREWQT 247
++ RI + E F + +E++L+KIG +R + +GGEVD+ TA+ ++E+Q
Sbjct: 195 ILSRINNFDNSIIKEYFGVDYEEVDEELLKKIGNKRSYLTKGGEVDLVRTAKTIIKEYQD 254
Query: 248 GRFTLFSNDEEK-KEEYIESFGEILEVIKQ-ENLTEPRIILWKFRDLLEEYVGSEKR-FG 304
G+ + D +K ++ I + +K + + ++I+ +D Y +K G
Sbjct: 255 GKLNYYKVDLKKYGQDRERDISFITKYLKDFPFIEDAKMIVTHLKDFDGLYKKIKKPVLG 314
Query: 305 AIEVGDFTVAIATGFKKCPNAIKFIERI-TGKNVITSECFGKK 346
+ E+ V ++ G K K +E + +N+ FG K
Sbjct: 315 SEEIDGNIVVVSFGEKTKDACRKKVENLCRERNIEVLSKFGDK 357
>gb|AAK40894.1| GTP binding protein, hypothetical [Sulfolobus solfataricus]
Length = 267
Score = 171 bits (428), Expect = 1e-41
Identities = 94/253 (37%), Positives = 154/253 (60%), Gaps = 12/253 (4%)
Query: 10 VKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVP----KEWAEE 65
V ++I +D+VVEV+DAR+P TR++K+E +++++ K +L+V+NK DLVP K W +
Sbjct: 5 VIQLIKRSDLVVEVLDAREPSLTRSKKIEDIIVKNYKNILLVLNKGDLVPLWVLKAWKDY 64
Query: 66 YKKRSEIPVIFISARERKGTGILRKELKKMAKTIDKDKVKVALIGYPNVGKSTIINVLKG 125
+K I +++SA GT ILR +K + K +K V +GYP GKS++IN LKG
Sbjct: 65 FKTEENIESVYVSATSHLGTKILRDTMKSLLK---GNKGIVVFVGYPKSGKSSVINALKG 121
Query: 126 KHAVGTAPIP---GYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELVIKGGFPADKIEEPV 182
+H+ T+ P GYTK L ++ +++ DTPGV+P D + G+ AD +E+PV
Sbjct: 122 RHSAQTSAHPLEYGYTKSIQLFKIDNKIYAWDTPGVIPPDGNELEKTIRGYNADLLEDPV 181
Query: 183 KPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRG-IIREGGEVDIEETARWF 241
KPAL LI R++E KE+L + + +F + ++L +I RRG + E +I+ AR
Sbjct: 182 KPALMLINRVIEFSKESLISVYKV-DFNNPYELLERIAIRRGWFYKSTKEPNIDMAARAV 240
Query: 242 LREWQTGRFTLFS 254
+R++ G+ ++
Sbjct: 241 IRDYHEGKIAYYT 253
>emb|CAB57719.1| (Y18930) hypothetical gtp-binding protein [Sulfolobus solfataricus]
Length = 267
Score = 171 bits (428), Expect = 1e-41
Identities = 94/253 (37%), Positives = 154/253 (60%), Gaps = 12/253 (4%)
Query: 10 VKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVP----KEWAEE 65
V ++I +D+VVEV+DAR+P TR++K+E +++++ K +L+V+NK DLVP K W +
Sbjct: 5 VIQLIKRSDLVVEVLDAREPSLTRSKKIEDIIVKNYKNILLVLNKGDLVPLWVLKAWKDY 64
Query: 66 YKKRSEIPVIFISARERKGTGILRKELKKMAKTIDKDKVKVALIGYPNVGKSTIINVLKG 125
+K I +++SA GT ILR +K + K +K V +GYP GKS++IN LKG
Sbjct: 65 FKTEENIESVYVSATSHLGTKILRDTMKSLLK---GNKGIVVFVGYPKSGKSSVINALKG 121
Query: 126 KHAVGTAPIP---GYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELVIKGGFPADKIEEPV 182
+H+ T+ P GYTK L ++ +++ DTPGV+P D + G+ AD +E+PV
Sbjct: 122 RHSAQTSAHPLEYGYTKSIQLFKIDNKIYAWDTPGVIPPDGNELEKTIRGYNADLLEDPV 181
Query: 183 KPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRG-IIREGGEVDIEETARWF 241
KPAL LI R++E KE+L + + +F + ++L +I RRG + E +I+ AR
Sbjct: 182 KPALMLINRVIEFSKESLISVYKV-DFNNPYELLERIAIRRGWFYKSTKEPNIDMAARAV 240
Query: 242 LREWQTGRFTLFS 254
+R++ G+ ++
Sbjct: 241 IRDYHEGKIAYYT 253
>pir||E72764 probable GTP-binding protein APE0105 - Aeropyrum pernix (strain
K1) >gi|5103494|dbj|BAA79015.1| (AP000058) 263aa long
hypothetical GTP-binding protein [Aeropyrum pernix]
Length = 263
Score = 167 bits (419), Expect = 2e-40
Identities = 100/264 (37%), Positives = 153/264 (57%), Gaps = 13/264 (4%)
Query: 3 QKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKEW 62
Q +WR++ I D+VVEVVD RDP+ TR+R+ ERM K+LLIV+NK+DLVP
Sbjct: 2 QLASWRLLARTIKNVDVVVEVVDIRDPMVTRSRRAERMAEALDKRLLIVLNKSDLVPLRV 61
Query: 63 AEEYKKRSE---IPVIFISARERKGTGILRKELKKMAKTIDKDKVKVALIGYPNVGKSTI 119
AE++ + E VI++SAR R T LR +K +A D +IG+P GKS++
Sbjct: 62 AEKWARIIEGMGFDVIYVSARHRLSTRRLRGFIKHLA---DVKPFSAGVIGFPKTGKSSV 118
Query: 120 INVLKGKHAVGTAPI---PGYTKGKHLIRLTKRLWLLDTPGVVPID-DFDELVIKGGFPA 175
IN L+G+ T+PI PGYTKG L+++ +++DTPGV+P++ + E +I+G P
Sbjct: 119 INALRGRKGAPTSPIPGSPGYTKGLQLLKIEPGFYMVDTPGVIPVEGGWPESIIRGRSPE 178
Query: 176 DKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRG-IIREGGEVDI 234
D + +PV PA LI +IL + A + I +D +I+ ++ +RG + E I
Sbjct: 179 D-LPDPVPPAAALIEKILRYNRRAFQAAYGITA-QDPYEIMERLAVKRGWFYKTTKEPLI 236
Query: 235 EETARWFLREWQTGRFTLFSNDEE 258
EE AR +R++ + + EE
Sbjct: 237 EEAARTIIRDYHKAKIPFYVPPEE 260
>gb|AAF30346.1|AC019018_24 (AC019018) putative GTP-binding protein; 106556-109264 [Arabidopsis
thaliana]
Length = 576
Score = 160 bits (400), Expect = 3e-38
Identities = 93/261 (35%), Positives = 146/261 (55%), Gaps = 12/261 (4%)
Query: 2 KQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIE--SGKKLLIVMNKADLVP 59
+ K+ W + +VI +D++V+V+DARDP GTR LE+ + E K +++++NK DLVP
Sbjct: 201 QSKRIWGELYKVIDSSDVIVQVIDARDPQGTRCHHLEKTLKEHHKHKHMILLLNKCDLVP 260
Query: 60 ----KEWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKT-IDKDKVKVALIGYPNV 114
K W K S + G G L L++ A+ DK + V +GYPNV
Sbjct: 261 AWATKGWLRVLSKEYPTLAFHASVNKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNV 320
Query: 115 GKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVV--PIDDFDELVIKGG 172
GKS++IN L+ K+ APIPG TK I LTKR++L+D PGVV D ++V+KG
Sbjct: 321 GKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQSRDTETDIVLKGV 380
Query: 173 FPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEV 232
+E+ + +++RR+ +KE L + I+++ D+ D L ++ + G + +GGE
Sbjct: 381 VRVTNLEDASEHIGEVLRRV---KKEHLQRAYKIKDWEDDHDFLLQLCKSSGKLLKGGEP 437
Query: 233 DIEETARWFLREWQTGRFTLF 253
D+ A+ L +WQ GR F
Sbjct: 438 DLMTGAKMILHDWQRGRIPFF 458
>gi|7019419 nucleolar GTPase [Homo sapiens] >gi|3334276|sp|Q13823|NGP1_HUMAN
AUTOANTIGEN NGP-1 >gi|179285|gb|AAC37588.1| (L05425)
nucleolar GTPase [Homo sapiens]
Length = 731
Score = 151 bits (378), Expect = 1e-35
Identities = 91/261 (34%), Positives = 142/261 (53%), Gaps = 12/261 (4%)
Query: 2 KQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLVP 59
+ K+ W + +VI +D+VV+V+DARDP+GTR+ +E + + K L+ V+NK DLVP
Sbjct: 202 QSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFVLNKCDLVP 261
Query: 60 ----KEWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKT-IDKDKVKVALIGYPNV 114
K W + S G G + L++ K DK ++ V IGYPNV
Sbjct: 262 TWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQLLRQFGKLHTDKKQISVGFIGYPNV 321
Query: 115 GKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVV-PIDDFD-ELVIKGG 172
GKS++IN L+ K API G TK I L +R++L+D PGVV P +D + ++V+KG
Sbjct: 322 GKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSEDSETDIVLKGV 381
Query: 173 FPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEV 232
+KI+ P ++ R + E +++ + I + + ED L K+ R G + +GGE
Sbjct: 382 VQVEKIKSPEDHIGAVLER---AKPEYISKTYKIDSWENAEDFLEKLAFRTGKLLKGGEP 438
Query: 233 DIEETARWFLREWQTGRFTLF 253
D++ + L +WQ GR F
Sbjct: 439 DLQTVGKMVLNDWQRGRIPFF 459
>gi|11423270 nucleolar GTPase [Homo sapiens]
Length = 633
Score = 151 bits (378), Expect = 1e-35
Identities = 91/261 (34%), Positives = 142/261 (53%), Gaps = 12/261 (4%)
Query: 2 KQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLVP 59
+ K+ W + +VI +D+VV+V+DARDP+GTR+ +E + + K L+ V+NK DLVP
Sbjct: 104 QSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFVLNKCDLVP 163
Query: 60 ----KEWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKT-IDKDKVKVALIGYPNV 114
K W + S G G + L++ K DK ++ V IGYPNV
Sbjct: 164 TWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQLLRQFGKLHTDKKQISVGFIGYPNV 223
Query: 115 GKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVV-PIDDFD-ELVIKGG 172
GKS++IN L+ K API G TK I L +R++L+D PGVV P +D + ++V+KG
Sbjct: 224 GKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSEDSETDIVLKGV 283
Query: 173 FPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEV 232
+KI+ P ++ R + E +++ + I + + ED L K+ R G + +GGE
Sbjct: 284 VQVEKIKSPEDHIGAVLER---AKPEYISKTYKIDSWENAEDFLEKLAFRTGKLLKGGEP 340
Query: 233 DIEETARWFLREWQTGRFTLF 253
D++ + L +WQ GR F
Sbjct: 341 DLQTVGKMVLNDWQRGRIPFF 361
>pir||T24970 hypothetical protein T19A6.2a - Caenorhabditis elegans
>gi|3879894|emb|CAA16512.1| (AL021571) predicted using
Genefinder~contains similarity to Pfam domain: PF01926
(GTPase of unknown function), Score=317.5,
E-value=5.2e-92, N=1~cDNA EST yk216b4.5 comes from this
gene~cDNA EST yk282e12.5 comes from this gene~cDNA EST
yk292e12.5 comes>
Length = 698
Score = 150 bits (374), Expect = 3e-35
Identities = 91/261 (34%), Positives = 146/261 (55%), Gaps = 12/261 (4%)
Query: 2 KQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLVP 59
+ + W + +VI +D+VV+VVDARDP+GTR R +E + + K L+ V+NK DLVP
Sbjct: 217 QSNRVWGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLVP 276
Query: 60 ----KEWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKTI-DKDKVKVALIGYPNV 114
++W E K S G G + L++ AK D+ ++ V IGYPNV
Sbjct: 277 TWVTRKWIGELSKEMPTIAFHASINNSFGKGAVINLLRQFAKLHPDRPQISVGFIGYPNV 336
Query: 115 GKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVV-PIDDFD-ELVIKGG 172
GKS+++N L+ K TAPI G TK + L +R++L+D+PGVV P D + ++++KG
Sbjct: 337 GKSSLVNTLRKKKVCKTAPIAGETKVWQYVMLMRRIYLIDSPGVVYPQGDSETQIILKGV 396
Query: 173 FPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEV 232
+ +++P ++ R + E L ++ I EF D +D L KI ++G + +GG+
Sbjct: 397 VRVENVKDPENHVQGVLDR---CKPEHLRRQYGIPEFTDVDDFLTKIAIKQGRLLKGGDP 453
Query: 233 DIEETARWFLREWQTGRFTLF 253
DI ++ L E+Q G+ F
Sbjct: 454 DIVAVSKVVLNEFQRGKLPYF 474
>pir||T24972 hypothetical protein T19A6.2b - Caenorhabditis elegans
>gi|3879896|emb|CAA16514.1| (AL021571) contains
similarity to Pfam domain: PF01926 (GTPase of unknown
function), Score=317.5, E-value=5.2e-92, N=1~cDNA EST
yk16b11.3 comes from this gene~cDNA EST yk3g7.3 comes
from this gene~cDNA EST yk3g7.5 comes from this
gene~cDNA EST yk146h4.>
Length = 639
Score = 150 bits (374), Expect = 3e-35
Identities = 91/261 (34%), Positives = 146/261 (55%), Gaps = 12/261 (4%)
Query: 2 KQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLVP 59
+ + W + +VI +D+VV+VVDARDP+GTR R +E + + K L+ V+NK DLVP
Sbjct: 158 QSNRVWGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLVP 217
Query: 60 ----KEWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKTI-DKDKVKVALIGYPNV 114
++W E K S G G + L++ AK D+ ++ V IGYPNV
Sbjct: 218 TWVTRKWIGELSKEMPTIAFHASINNSFGKGAVINLLRQFAKLHPDRPQISVGFIGYPNV 277
Query: 115 GKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVV-PIDDFD-ELVIKGG 172
GKS+++N L+ K TAPI G TK + L +R++L+D+PGVV P D + ++++KG
Sbjct: 278 GKSSLVNTLRKKKVCKTAPIAGETKVWQYVMLMRRIYLIDSPGVVYPQGDSETQIILKGV 337
Query: 173 FPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEV 232
+ +++P ++ R + E L ++ I EF D +D L KI ++G + +GG+
Sbjct: 338 VRVENVKDPENHVQGVLDR---CKPEHLRRQYGIPEFTDVDDFLTKIAIKQGRLLKGGDP 394
Query: 233 DIEETARWFLREWQTGRFTLF 253
DI ++ L E+Q G+ F
Sbjct: 395 DIVAVSKVVLNEFQRGKLPYF 415
>pir||T23172 hypothetical protein K01C8.9 - Caenorhabditis elegans
>gi|3878119|emb|CAA88860.1| (Z49068) contains similarity
to Pfam domain: PF01926 (GTPase of unknown function),
Score=367.6, E-value=4.1e-107, N=1~cDNA EST EMBL:M89111
comes from this gene~cDNA EST yk2f7.3 comes from this
gene~cDNA EST yk2f7.5 comes from this gene~cDNA EST
yk63b3.>
Length = 556
Score = 149 bits (372), Expect = 5e-35
Identities = 82/279 (29%), Positives = 151/279 (53%), Gaps = 32/279 (11%)
Query: 10 VKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKEWAEEYKK- 68
V++ + AD++++V+DARDP+G+R++ +E V++ GK+L++++NK DLVP+E +++ +
Sbjct: 141 VRKTVEIADVIIQVLDARDPLGSRSKSVEDQVLKGGKRLVLLLNKIDLVPRENVQKWLEY 200
Query: 69 -RSEIPVIFI--SARERK--------------------GTGILRKELKKMAKTID-KDKV 104
R + P I S +E+K G I+ K L + D K +
Sbjct: 201 LRGQFPTIAFKASTQEQKSNIGRFNSAILNNTETSKCVGADIVMKILANYCRNKDIKTSI 260
Query: 105 KVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDF 164
+V ++G+PNVGKS++IN LK + A +PG TK + L K + L+D+PGV+ +
Sbjct: 261 RVGVVGFPNVGKSSVINSLKRRKACNVGNLPGITKEIQEVELDKNIRLIDSPGVILVSQK 320
Query: 165 D----ELVIKGGFPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIG 220
D E+ +K D + +P+ P ++RR KE + +++ +F + L ++
Sbjct: 321 DLDPIEVALKNAIRVDNLLDPIAPVHAILRR---CSKETIMLHYNLADFNSVDQFLAQLA 377
Query: 221 ERRGIIREGGEVDIEETARWFLREWQTGRFTLFSNDEEK 259
R G +R G D+ A+ L +W TG+ +++ E+
Sbjct: 378 RRIGKLRRGARPDVNAAAKRVLNDWNTGKLRYYTHPPEQ 416
>gb|AAB09043.1| (U69600) testicular antigen [Mus musculus]
Length = 728
Score = 148 bits (369), Expect = 1e-34
Identities = 91/262 (34%), Positives = 141/262 (53%), Gaps = 12/262 (4%)
Query: 1 MKQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLV 58
++ K+ W + +VI +D+VV+V+DARDP+GTR+ +E + + K L+ V+NK DLV
Sbjct: 201 VQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKPWKHLIFVLNKCDLV 260
Query: 59 P----KEWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKT-IDKDKVKVALIGYPN 113
P K W + S G G + L K DK ++ V IGYPN
Sbjct: 261 PTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQLLGSFGKLHTDKKQISVGFIGYPN 320
Query: 114 VGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVV-PIDDFD-ELVIKG 171
VGKS++IN L+ K API G TK I L +R++L+D PGVV P +D + ++V+KG
Sbjct: 321 VGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDWPGVVYPSEDSETDIVLKG 380
Query: 172 GFPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGE 231
+KI+ P ++ R + E +++ + I + + ED L K+ R G + +GGE
Sbjct: 381 VVQVEKIKAPQDHIGAVLER---AKPEYISKTYKIESWENAEDFLEKLALRTGKLLKGGE 437
Query: 232 VDIEETARWFLREWQTGRFTLF 253
D+ ++ L +WQ GR F
Sbjct: 438 PDMLTVSKMVLNDWQRGRIPFF 459
>gb|AAF57834.1| (AE003802) CG6501 gene product [Drosophila melanogaster]
Length = 674
Score = 147 bits (367), Expect = 2e-34
Identities = 90/281 (32%), Positives = 148/281 (52%), Gaps = 21/281 (7%)
Query: 2 KQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLVP 59
+ K+ W + +V+ +D++++V+DARDP+GTR++ +E + + K L ++NK DLVP
Sbjct: 207 QSKRIWNELHKVVDASDVLLQVLDARDPMGTRSKYIEEFLRKEKPHKHLFFILNKVDLVP 266
Query: 60 ----KEWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKT-IDKDKVKVALIGYPNV 114
+ W S + G G L +++ K +DK ++ V IGYPNV
Sbjct: 267 VWVTQRWVAILSAEYPTIAFHASLQHPFGKGALINLFRQLGKLHLDKKQISVGFIGYPNV 326
Query: 115 GKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVV-PIDDFD-ELVIKGG 172
GKS++IN L+ K API G TK I L KR++L+D PGVV P + D E V+KG
Sbjct: 327 GKSSVINALRSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVYPTAETDTEKVLKGV 386
Query: 173 FPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGEV 232
+ + P L++R+ R E +++ + I + L ++ ++ G + +GGE
Sbjct: 387 VRVELVTNPEDYVDSLLKRV---RPEYISKNYKIEHWNTSTHFLEQLAQKTGKLLKGGEP 443
Query: 233 DIEETARWFLREWQTGR---------FTLFSNDEEKKEEYI 264
D+ TAR L +WQ G+ F + + E K+EE +
Sbjct: 444 DVTVTARMVLNDWQRGKLPFYVPPEGFAVPKSQEGKEEEVV 484
>pir||T39037 hypothetical gtp-binding protein associated - fission yeast
(Schizosaccharomyces pombe) >gi|2388994|emb|CAB11727.1|
(Z98981) hypothetical gtp-binding protein associated
[Schizosaccharomyces pombe]
Length = 537
Score = 143 bits (357), Expect = 3e-33
Identities = 93/274 (33%), Positives = 145/274 (51%), Gaps = 21/274 (7%)
Query: 2 KQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIE--SGKKLLIVMNKADLVP 59
+ K+ W + +VI +D++++V+DARDP+GTR +ER + S K +++V+NK DLVP
Sbjct: 202 QSKRIWNELYKVIDSSDVLIQVLDARDPVGTRCGTVERYLRNEASHKHMILVLNKVDLVP 261
Query: 60 KEWAEEYKK--RSEIPVIFISARERK--GTGILRKELKKMAKT-IDKDKVKVALIGYPNV 114
A + K E P I A G G L + L++ A DK ++ V LIG+PN
Sbjct: 262 TSVAAAWVKILAKEYPTIAFHASINNSFGKGSLIQILRQFASLHSDKKQISVGLIGFPNA 321
Query: 115 GKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFD---ELVIKG 171
GKS+IIN L+ K APIPG TK + L KR++L+D PG+VP D EL++KG
Sbjct: 322 GKSSIINTLRKKKVCNVAPIPGETKVWQYVALMKRIFLIDCPGIVPPSSNDSDAELLLKG 381
Query: 172 GFPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGE 231
+ + P ++ R + + L ++I + D + L K+ ++ G + +GGE
Sbjct: 382 VVRVENVSNPEAYIPTVLSR---CKVKHLERTYEISGWNDSTEFLAKLAKKGGRLLKGGE 438
Query: 232 VDIEETARWFLREWQTGRFTLF--------SNDE 257
D A+ L ++ G+ F SNDE
Sbjct: 439 PDEASVAKMVLNDFMRGKIPWFIGPKGLSSSNDE 472
>gb|AAF27009.1|AC016827_20 (AC016827) putative GTPase [Arabidopsis thaliana]
Length = 582
Score = 143 bits (356), Expect = 4e-33
Identities = 94/312 (30%), Positives = 162/312 (51%), Gaps = 36/312 (11%)
Query: 3 QKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLVPK 60
++ ++ + +VI +D+++EV+DARDP+GTR +ERMV+++G K L++++NK DLVP+
Sbjct: 123 ERAFYKELVKVIELSDVILEVLDARDPLGTRCTDMERMVMQAGPNKHLVLLLNKIDLVPR 182
Query: 61 EWAEEYKK--RSEIPVIFI--SARERK-----------------------GTGILRKELK 93
E AE++ R E P + S +E++ G L K LK
Sbjct: 183 EAAEKWLMYLREEFPAVAFKCSTQEQRSNLGWKSSKASKPSNMLQTSDCLGADTLIKLLK 242
Query: 94 KMAKTID-KDKVKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWL 152
+++ + K + V +IG PNVGKS++IN LK H V PG T+ + L K + L
Sbjct: 243 NYSRSHELKKSITVGIIGLPNVGKSSLINSLKRAHVVNVGATPGLTRSLQEVHLDKNVKL 302
Query: 153 LDTPGVVPIDDFD---ELVIKGGFPADKIEEPVKPALKLIRRILETRKEALTEKFDIREF 209
LD PGVV + + ++ +K+++PV P ++++ K+ L + I F
Sbjct: 303 LDCPGVVMLKSSGNDASIALRNCKRIEKLDDPVSPVKEILKL---CPKDMLVTLYKIPSF 359
Query: 210 RDEEDILRKIGERRGIIREGGEVDIEETARWFLREWQTGRFTLFSNDEEKKEEYIESFGE 269
+D L K+ RG +++GG VDI+ AR L +W G+ ++ ++ +
Sbjct: 360 EAVDDFLYKVATVRGKLKKGGLVDIDAAARIVLHDWNEGKIPYYTMPPKRDQGGHAESKI 419
Query: 270 ILEVIKQENLTE 281
+ E+ K N+ E
Sbjct: 420 VTELAKDFNIDE 431
>gi|6324381 Ynr053cp [Saccharomyces cerevisiae]
>gi|1730685|sp|P53742|YN8U_YEAST HYPOTHETICAL
GTP-BINDING PROTEIN IN POP2-HOL1 INTERGENIC REGION
>gi|2131978|pir||S63384 hypothetical protein YNR053c -
yeast (Saccharomyces cerevisiae)
>gi|1302570|emb|CAA96334.1| (Z71668) ORF YNR053c
[Saccharomyces cerevisiae]
Length = 486
Score = 135 bits (337), Expect = 7e-31
Identities = 82/271 (30%), Positives = 142/271 (52%), Gaps = 13/271 (4%)
Query: 2 KQKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLVP 59
+ K+ W + +VI +D+V+ V+DARDP+GTR + +E + + K L+ V+NK DLVP
Sbjct: 207 QSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYVLNKCDLVP 266
Query: 60 K----EWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKT-IDKDKVKVALIGYPNV 114
W + K S G G L + L++ ++ D+ ++ V IGYPN
Sbjct: 267 TWVAAAWVKHLSKERPTLAFHASITNSFGKGSLIQLLRQFSQLHTDRKQISVGFIGYPNT 326
Query: 115 GKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVP---IDDFDELVIKG 171
GKS+IIN L+ K APIPG TK I L KR++L+D PG+VP D ++++ +G
Sbjct: 327 GKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLIDCPGIVPPSSKDSEEDILFRG 386
Query: 172 GFPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREGGE 231
+ + P + +++R + + L ++I ++D + + + ++G + +GGE
Sbjct: 387 VVRVEHVTHPEQYIPGVLKR---CQVKHLERTYEISGWKDATEFIEILARKQGRLLKGGE 443
Query: 232 VDIEETARWFLREWQTGRFTLFSNDEEKKEE 262
D ++ L ++ G+ F EK+ E
Sbjct: 444 PDESGVSKQILNDFNRGKIPWFVLPPEKEGE 474
>gi|9506611 hypothetical protein [Homo sapiens] >gi|7022755|dbj|BAA91712.1|
(AK001475) unnamed protein product [Homo sapiens]
Length = 582
Score = 122 bits (303), Expect = 7e-27
Identities = 78/283 (27%), Positives = 145/283 (50%), Gaps = 35/283 (12%)
Query: 3 QKKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVI--ESGKKLLIVMNKADLVPK 60
+K ++ ++V+ +D+++EV+DARDP+G R ++E V+ + KKL++V+NK DLVPK
Sbjct: 121 RKAYYKEFRKVVEYSDVILEVLDARDPLGCRCFQMEEAVLRAQGNKKLVLVLNKIDLVPK 180
Query: 61 EWAEEYKK--RSEIPVIFISARERKGTGILRK---ELKKMAKTIDKDK------------ 103
E E++ R+E+P + A + L + + + ++++ K K
Sbjct: 181 EVVEKWLDYLRNELPTVAFKASTQHQVKNLNRCSVPVDQASESLLKSKACFGAENLMRVL 240
Query: 104 ------------VKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLW 151
++V ++G PNVGKS++IN LK A +PG TK + L K +
Sbjct: 241 GNYCRLGEVRTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLDKFIR 300
Query: 152 LLDTPGVVPIDDFD-ELVIKGGFPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFR 210
LLD PG+VP + + +++ K+ +PV P +++R E ++ + + F+
Sbjct: 301 LLDAPGIVPGPNSEVGTILRNCVHVQKLADPVTPVETILQR---CNLEEISNYYGVSGFQ 357
Query: 211 DEEDILRKIGERRGIIREGGEVDIEETARWFLREWQTGRFTLF 253
E L + R G ++GG E+ A+ L +W +G+ + +
Sbjct: 358 TTEHFLTAVAHRLGKKKKGGLYSQEQAAKAVLADWVSGKISFY 400
>gb|AAF55384.1| (AE003716) CG3983 gene product [Drosophila melanogaster]
Length = 581
Score = 119 bits (296), Expect = 4e-26
Identities = 86/291 (29%), Positives = 141/291 (47%), Gaps = 37/291 (12%)
Query: 4 KKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMV--IESGKKLLIVMNKADLVPKE 61
K+ ++ ++VI AD+V+EVVDARDP+GTR ++ER V K+L++V+NKADLVP+E
Sbjct: 138 KQYFKEFRKVIENADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRE 197
Query: 62 ----WAEEYKKRSEIPVIFISARERKGTGILRKELKKMA--KTID--------------- 100
W + Y +RS F ++ + + + R++L++M K +
Sbjct: 198 NLNNWIK-YFRRSGPVTAFKASTQDQANRLGRRKLREMKTEKAMQGSVCIGAELLMSMLG 256
Query: 101 --------KDKVKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWL 152
K ++V ++G PNVGKS+IIN L + PG TK + L ++ L
Sbjct: 257 NYCRNKGIKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELDSKIKL 316
Query: 153 LDTPGVVPID--DFDELVIKGGFPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFR 210
+D PG+V + V+K +++P A +++R KE +DI +
Sbjct: 317 IDCPGIVFTSGGENSHAVLKNAQRVGDVKDPFTIAESVLKR---ASKEYFCTMYDITNYD 373
Query: 211 DEEDILRKIGERRGIIREGGEVDIEETARWFLREWQTGRFTLFSNDEEKKE 261
E+ K R G + G D+ AR L +W TG+ + E +E
Sbjct: 374 TFEEFFAKKAARMGKFLKKGVPDVVAAARSVLNDWNTGKIKYCTQPPEVQE 424
>pir||T40020 probable protein transport protein - fission yeast
(Schizosaccharomyces pombe) >gi|3650391|emb|CAA21100.1|
(AL031743) putative GTPase protein [Schizosaccharomyces
pombe]
Length = 470
Score = 119 bits (295), Expect = 6e-26
Identities = 88/313 (28%), Positives = 154/313 (49%), Gaps = 42/313 (13%)
Query: 11 KEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG---KKLLIVMNKADLVPKEWAEEYK 67
K+V+ +D+++ V+DARDP GTR++ +ER V+ S K+L+ V+NK DLVP E ++
Sbjct: 157 KKVVEASDVILYVLDARDPEGTRSKDVERQVLASSAEEKRLIFVINKIDLVPSEVLNKWV 216
Query: 68 K--RSEIPVIFISARERKGTGILRKELKKMAKTID---------------KDKVKVALIG 110
R+ P I + + G L+ + + TI K + V +IG
Sbjct: 217 TYLRNFFPTIPMRSASGSGNSNLKHQSASASSTISNLLKSLKSYSAKKKLKSSLTVGVIG 276
Query: 111 YPNVGKSTIINVLKGKHAVG-TAPIP-----GYTKGKHLIRLTKRLWLLDTPGVV----- 159
YPNVGKS++IN L + A G +AP P G T ++L +L L+D+PG+V
Sbjct: 277 YPNVGKSSVINALVNRSANGRSAPCPAGNVAGMTTSLREVKLDNKLRLVDSPGIVFPSSD 336
Query: 160 PIDDFDELVIKGGFPADKIEEPVKPALKLIRRI--LETRKEALTEKFDIREFRDEEDI-- 215
DD LV+ + K+++PV A +++ + + + E + +++++ + DI
Sbjct: 337 SKDDLYRLVMLNAVSSTKVDDPVAVASYILQFLSRVPGQLERMFQRYELPPLLNTSDIDT 396
Query: 216 ----LRKIGERRGIIREGGEVDIEETARWFLREWQTGRFTLFSNDE---EKKEEYIESFG 268
L I +RG + GG ++ A + +W GR ++ E EK ++
Sbjct: 397 ATDFLVNIARKRGRLGRGGIPNLNAAANIVINDWHAGRIEWWAEPEVINEKNSSEVQDTQ 456
Query: 269 EILEVIKQENLTE 281
+ E K+ +L +
Sbjct: 457 IVTEWAKEFDLND 469
>gi|7657048 putative nucleotide binding protein, estradiol-induced [Homo
sapiens] >gi|6457340|gb|AAF09482.1|AF191018_1 (AF191018)
E2IG3 [Homo sapiens]
Length = 560
Score = 116 bits (289), Expect = 3e-25
Identities = 79/267 (29%), Positives = 147/267 (54%), Gaps = 37/267 (13%)
Query: 10 VKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG-KKLLIVMNKADLVPKEWAEEYKK 68
+K+VI +D+V+EV+DARDP+G R ++E +++SG KKL++++NK+DLVPKE E +
Sbjct: 134 LKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKSDLVPKENLESWLN 193
Query: 69 --RSEIP-VIFISARERKGTGILRKELKK------------------------MAKTIDK 101
+ E+P V+F ++ + K G + K +K +T K
Sbjct: 194 YLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPFRSEVCFGKEGLWKLLGGFQETCSK 253
Query: 102 DKVKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPG--VV 159
++V +IG+PNVGKS+IIN LK + G T+ ++ L K++ ++D+P V
Sbjct: 254 -AIRVGVIGFPNVGKSSIINSLKQEQMCNVGVSMGLTRSMQVVPLDKQITIIDSPSFIVS 312
Query: 160 PIDDFDELVIKGGFPAD-KIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRK 218
P++ L ++ PA ++ +P++ A ++ + + R+ L K+ + +R+ +
Sbjct: 313 PLNSSSALALRS--PASIEVVKPMEAASAILSQ-ADARQVVL--KYTVPGYRNSLEFFTM 367
Query: 219 IGERRGIIREGGEVDIEETARWFLREW 245
+ +RRG+ ++GG ++E A+ EW
Sbjct: 368 LAQRRGMHQKGGIPNVEGAAKLLWSEW 394
>gi|11435204 putative nucleotide binding protein, estradiol-induced [Homo
sapiens]
Length = 662
Score = 116 bits (288), Expect = 4e-25
Identities = 79/267 (29%), Positives = 147/267 (54%), Gaps = 37/267 (13%)
Query: 10 VKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG-KKLLIVMNKADLVPKEWAEEYKK 68
+K+VI +D+V+EV+DARDP+G R ++E +++SG KKL++++NK+DLVPKE E +
Sbjct: 247 LKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKSDLVPKENLESWLN 306
Query: 69 --RSEIP-VIFISARERKGTGILRKELKK------------------------MAKTIDK 101
+ E+P V+F ++ + K G + K +K +T K
Sbjct: 307 YLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPFRSEVCFGKEGLWKLLGGFQETCSK 366
Query: 102 DKVKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPG--VV 159
++V +IG+PNVGKS+IIN LK + G T+ ++ L K++ ++D+P V
Sbjct: 367 -AIRVGVIGFPNVGKSSIINSLKQEQMCNVGVSMGLTRSMQVVPLDKQITIIDSPSFIVS 425
Query: 160 PIDDFDELVIKGGFPAD-KIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEEDILRK 218
P++ L ++ PA ++ +P++ A ++ + + R+ L K+ + +R+ +
Sbjct: 426 PLNSSSALALRS--PASIEVVKPMEAASAILSQ-ADARQVVL--KYTVPGYRNSLEFFTV 480
Query: 219 IGERRGIIREGGEVDIEETARWFLREW 245
+ +RRG+ ++GG ++E A+ EW
Sbjct: 481 LAQRRGMHQKGGIPNVEGAAKLLWSEW 507
>pir||B70180 conserved hypothetical protein BB0643 - Lyme disease spirochete
>gi|2688581|gb|AAC67000.1| (AE001166) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 279
Score = 114 bits (283), Expect = 1e-24
Identities = 80/261 (30%), Positives = 149/261 (56%), Gaps = 20/261 (7%)
Query: 4 KKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKEWA 63
K+A ++K + +A+IV+E++DAR P ++N E++ K +I+++K+D+
Sbjct: 13 KRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKNQAK--IILLHKSDVAQINEI 70
Query: 64 EEYKKRSEI--PVIFISARERKGTGILRKEL----KKMA--KTID--KDKVKVALIGYPN 113
++KK E + IS +KG +RK++ KK+A K I K+K+KV +IG PN
Sbjct: 71 IKWKKYFENLGNTVIISNIYKKG---MRKQIIDIIKKLAIVKKIKNYKEKIKVLIIGVPN 127
Query: 114 VGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELVIKGGF 173
VGKS+IIN+L GK + A PGYTK ++++ + + L D PG++ + D+ + K
Sbjct: 128 VGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEEINLFDMPGILWHNLVDQSIAKKLA 187
Query: 174 PADKIEEPVKP----ALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREG 229
D I+ + AL L+ + + K L +K++I ++ DIL+ + R +I +
Sbjct: 188 ILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYH-KNSLDILQNFAKARKLIGKK 246
Query: 230 GEVDIEETARWFLREWQTGRF 250
E+++E+ ++ ++E++ G+F
Sbjct: 247 NELNLEKASKILIKEFREGKF 267
>gi|6320842 Yer006wp [Saccharomyces cerevisiae] >gi|731436|sp|P40010|YEJ6_YEAST
HYPOTHETICAL GTP-BINDING PROTEIN IN YND1-PAC2 INTERGENIC
REGION >gi|1077630|pir||S50464 hypothetical protein
YER006w - yeast (Saccharomyces cerevisiae)
>gi|603598|gb|AAB64539.1| (U18778) Yer006wp
[Saccharomyces cerevisiae]
Length = 520
Score = 111 bits (276), Expect = 1e-23
Identities = 86/293 (29%), Positives = 141/293 (47%), Gaps = 49/293 (16%)
Query: 2 KQKKAW-RIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIES-GKKLLIVMNKADLVP 59
K +KA+ +I K VI +D+++ V+DARDP TR+RK+E V++S GK+L++++NK DL+P
Sbjct: 160 KSRKAYDKIFKSVIDASDVILYVLDARDPESTRSRKVEEAVLQSQGKRLILILNKVDLIP 219
Query: 60 KEWAEEYKK--RSEIPVIFISARER--KGTGILRK--------ELKKMAKTID-----KD 102
E++ +S P I + A GT RK L + KT K
Sbjct: 220 PHVLEQWLNYLKSSFPTIPLRASSGAVNGTSFNRKLSQTTTASALLESLKTYSNNSNLKR 279
Query: 103 KVKVALIGYPNVGKSTIINVLKGKHAVGTAPIP-----GYTKGKHLIRLTKRLWLLDTPG 157
+ V +IGYPNVGKS++IN L + + P G T I++ +L +LD+PG
Sbjct: 280 SIVVGVIGYPNVGKSSVINALLARRGGQSKACPVGNEAGVTTSLREIKIDNKLKILDSPG 339
Query: 158 VV---------PIDDFDELVIKGGFPADKIEEPVKPALKLIRRILETRKEALTEKF---- 204
+ ++ EL + PA I +P L L++R+ + + +TE F
Sbjct: 340 ICFPSENKKRSKVEHEAELALLNALPAKHIVDPYPAVLMLVKRL--AKSDEMTESFKKLY 397
Query: 205 --------DIREFRDEEDILRKIGERRGIIREGGEVDIEETARWFLREWQTGR 249
D F + L + +RG + +GG ++ L +W+ G+
Sbjct: 398 EIPPIPANDADTF--TKHFLIHVARKRGRLGKGGIPNLASAGLSVLNDWRDGK 448
>pir||F69880 conserved hypothetical protein ylqF - Bacillus subtilis
>gi|2633977|emb|CAB13478.1| (Z99112) similar to
hypothetical proteins [Bacillus subtilis]
Length = 282
Score = 109 bits (269), Expect = 6e-23
Identities = 85/273 (31%), Positives = 139/273 (50%), Gaps = 25/273 (9%)
Query: 5 KAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKAD----LVPK 60
KA R V E + DIV E+VDAR P+ +RN +E ++ K ++++NKAD V +
Sbjct: 12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQ 69
Query: 61 EWAEEYKKRSEIPVIFISARERKGTG----------ILRKELKKM-AKTIDKDKVKVALI 109
+W E ++ + + +S G G IL+++ +M AK + ++ +I
Sbjct: 70 QWKEHFENQG---IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALII 126
Query: 110 GYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELV- 168
G PNVGKST+IN L K+ T PG T + +++ K L LLDTPG++ DELV
Sbjct: 127 GIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVG 186
Query: 169 ---IKGGFPADKIEEPVKPALKLIRRILETRKEALTEKFDIREF-RDEEDILRKIGERRG 224
G D I A+ +R + E E L E++ + E D ++ IGE+RG
Sbjct: 187 LRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRG 246
Query: 225 IIREGGEVDIEETARWFLREWQTGRFTLFSNDE 257
+ GG ++ ++T +R+ +T +F S ++
Sbjct: 247 CLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQ 279
>dbj|BAA75361.1| (AB013365) YlqF [Bacillus halodurans] >gi|10175096|dbj|BAB06195.1|
(AP001515) unknown conserved protein [Bacillus
halodurans]
Length = 284
Score = 108 bits (266), Expect = 1e-22
Identities = 81/263 (30%), Positives = 136/263 (50%), Gaps = 23/263 (8%)
Query: 5 KAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVP----K 60
KA R V E + D+V+E++DAR P+ +RN ++ +V K L+++NK DL K
Sbjct: 12 KARREVTEKLKLIDVVIELLDARVPLSSRNPMMDEIVAH--KPRLVLLNKDDLADPSKTK 69
Query: 61 EWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKT-IDKDKVK--------VALIGY 111
EW +++ V+ I+A+ +G + + +A+ I+K + K ++G
Sbjct: 70 EWTRFFEEGGAT-VLPINAQTGQGVSRISPACQTLAQALIEKQRAKGMKPRAIRAMILGI 128
Query: 112 PNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDE----- 166
PNVGKST+IN L K PG TK + I++ K L LLDTPG++ FD+
Sbjct: 129 PNVGKSTLINRLASKRIAKVGDRPGITKQQQWIKVGKELELLDTPGIL-WPKFDDQATGF 187
Query: 167 LVIKGGFPADKIEEPVKPALKLIRRILETRKEALTEKFDIREF-RDEEDILRKIGERRGI 225
+ G D++ + AL ++R + E + L +++ + E D + IG++RG
Sbjct: 188 RLAATGAIKDELLDFQDVALFVLRYMREMYPDRLMDRYKLNELPEDGVTLFDAIGKKRGH 247
Query: 226 IREGGEVDIEETARWFLREWQTG 248
+ GG +D ++TA LRE + G
Sbjct: 248 LLSGGYIDYDKTAEMILRELRAG 270
>pir||F72336 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981296|gb|AAD35850.1|AE001746_11 (AE001746)
conserved hypothetical protein [Thermotoga maritima]
Length = 262
Score = 105 bits (260), Expect = 7e-22
Identities = 84/257 (32%), Positives = 125/257 (47%), Gaps = 37/257 (14%)
Query: 4 KKAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVP---- 59
+KA R +K+++ + VVEV DAR P T ++ S K+ +I++NK D+
Sbjct: 9 EKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDF----SRKETIILLNKVDIADEKTT 64
Query: 60 KEWAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKTIDKDKVKVALIGYPNVGKSTI 119
K+W E +KK+ + + RK +L K+L + D+ +V ++G PN GKSTI
Sbjct: 65 KKWVEFFKKQGKRVITTHKGEPRK---VLLKKL-----SFDR-LARVLIVGVPNTGKSTI 115
Query: 120 INVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDE-----LVIKGGFP 174
IN LKGK A PG TKG L + +LDTPG++ + F E L++ G P
Sbjct: 116 INKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSEDLAAKLLLVGSLP 175
Query: 175 ADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDE--EDILRKIGERRGIIREGGEV 232
++IE+ +RI E E I E ED RK RG++++GG
Sbjct: 176 VERIED---------QRIFERAFEIFARSIGIESSFSEFFEDFARK----RGLLKKGGVP 222
Query: 233 DIEETARWFLREWQTGR 249
DIE F E G+
Sbjct: 223 DIERALMLFFTEVAQGK 239
>sp|Q10190|YAWG_SCHPO HYPOTHETICAL GTP-BINDING PROTEIN C3F10.16C IN CHROMOSOME I
>gi|7492623|pir||T38717 probable GTP-binding protein -
fission yeast (Schizosaccharomyces pombe)
>gi|1182063|emb|CAA93314.1| (Z69369) putative
GTP-binding protein [Schizosaccharomyces pombe]
Length = 616
Score = 105 bits (260), Expect = 7e-22
Identities = 91/301 (30%), Positives = 139/301 (45%), Gaps = 60/301 (19%)
Query: 7 WRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLVPKE--- 61
WR + VI +D+VV++VDAR+P+ R+ LE+ V E G KK +++NKAD++ +E
Sbjct: 161 WRQLWRVIERSDVVVQIVDARNPLFFRSAHLEQYVKEVGPSKKNFLLVNKADMLTEEQRN 220
Query: 62 -WAEEYKKRSEIPVIFISAR---ERKGTG------------------------------- 86
W+ Y + IP +F SAR E G
Sbjct: 221 YWSS-YFNENNIPFLFFSARMAAEANERGEDLETYESTSSNEIPESLQADENDVHSSRIA 279
Query: 87 ---ILRKELKKMAKTIDKDKVKVA--LIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGK 141
+L +K A T+ K K+ L+GYPNVGKS+ IN L G V + PG TK
Sbjct: 280 TLKVLEGIFEKFASTLPDGKTKMTFGLVGYPNVGKSSTINALVGSKKVSVSSTPGKTKHF 339
Query: 142 HLIRLTKRLWLLDTPGVVPIDDF----DELVIKGGFPADKIEEPVKPALKLIRRILETRK 197
I L++++ LLD PG+V F +LV+ G P D++ E P+ + RI +
Sbjct: 340 QTINLSEKVSLLDCPGLV-FPSFATTQADLVLDGVLPIDQLREYTGPSALMAERIPKEVL 398
Query: 198 EAL-TEKFDIREFRD-------EEDILRKIGERRGIIR-EGGEVDIEETARWFLREWQTG 248
E L T + I+ + +++L RG +R G D AR L+++ G
Sbjct: 399 ETLYTIRIRIKPIEEGGTGVPSAQEVLFPFARSRGFMRAHHGTPDDSRAARILLKDYVNG 458
Query: 249 R 249
+
Sbjct: 459 K 459
>pir||E81941 hypothetical protein NMA0950 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379653|emb|CAB84220.1|
(AL162754) hypothetical protein NMA0950 [Neisseria
meningitidis Z2491]
Length = 313
Score = 104 bits (257), Expect = 2e-21
Identities = 81/266 (30%), Positives = 126/266 (46%), Gaps = 21/266 (7%)
Query: 5 KAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKE--- 61
KA + + E D+V+E++DAR P + N L ++ GK L ++NK DL E
Sbjct: 12 KAKKAIAERAKSVDMVIEMLDARMPASSENPLLAQL--SKGKPKLKILNKQDLADPERTK 69
Query: 62 -WAEEYKKRSEIPVIFISARERKGTGILRKELKKMA---KTIDKDKVKVALIGYPNVGKS 117
W E Y R + I + + E G + + + M + IDK ++V + G PNVGKS
Sbjct: 70 IWLEHYNSRPDTCAIALDSSETGAHGKITQACRAMIPHRQGIDKP-LRVLICGIPNVGKS 128
Query: 118 TIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGV----VPIDDFDELVIKGGF 173
T+IN + GK + T PG TK + + L WL DTPG+ + +++ + GG
Sbjct: 129 TLINGMIGKKSAKTGNEPGITKAEQRLFLADDFWLYDTPGMLWPKIIVEESGYNLAAGGS 188
Query: 174 PADKIEEPVKPALKLI----RRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREG 229
+ + AL+L+ R L +E D DE L I ++RG + G
Sbjct: 189 VGRNALDEEEVALELLDYLRRHYLPMLQERYQADKDPSSHWDENVWLEWIAKKRGAVLSG 248
Query: 230 GEVDIEETARWFL---REWQTGRFTL 252
G ++ ++ A L RE + GR TL
Sbjct: 249 GRINYQKAAENILTDFREGKIGRITL 274
>pir||C81165 conserved hypothetical protein NMB0739 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225967|gb|AAF41152.1| (AE002428) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 505
Score = 104 bits (256), Expect = 2e-21
Identities = 81/266 (30%), Positives = 126/266 (46%), Gaps = 21/266 (7%)
Query: 5 KAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKE--- 61
KA + + E D+V+E++DAR P + N L ++ GK L ++NK DL E
Sbjct: 12 KAKKAIAERAKSVDMVIEMLDARMPASSENPLLAQL--SKGKPKLKILNKQDLADPERTK 69
Query: 62 -WAEEYKKRSEIPVIFISARERKGTGILRKELKKMA---KTIDKDKVKVALIGYPNVGKS 117
W E Y R + I + + E G + + + M + IDK ++V + G PNVGKS
Sbjct: 70 IWLEHYNSRPDTCAIALDSSETGAHGKITQACRAMIPHRQGIDKP-LRVLICGIPNVGKS 128
Query: 118 TIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGV----VPIDDFDELVIKGGF 173
T+IN + GK + T PG TK + + L WL DTPG+ + +++ + GG
Sbjct: 129 TLINGMIGKKSAKTGNEPGITKAEQRLFLADDFWLYDTPGMLWPKIIVEEGGYNLAAGGA 188
Query: 174 PADKIEEPVKPALKLI----RRILETRKEALTEKFDIREFRDEEDILRKIGERRGIIREG 229
+ + AL+L+ R L +E D DE L I ++RG + G
Sbjct: 189 VGRNALDEEEVALELLDYLRRHYLPMLQERYQADKDPSSHWDENVWLEWIAKKRGAVLSG 248
Query: 230 GEVDIEETARWFL---REWQTGRFTL 252
G ++ ++ A L RE + GR TL
Sbjct: 249 GRINYQKAAENILTDFREGKIGRITL 274
>pir||E82449 conserved hypothetical protein VCA0528 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657934|gb|AAF96431.1|
(AE004383) conserved hypothetical protein [Vibrio
cholerae]
Length = 314
Score = 96.0 bits (235), Expect = 6e-19
Identities = 69/257 (26%), Positives = 122/257 (46%), Gaps = 17/257 (6%)
Query: 5 KAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKE--- 61
KA + ++E I + D+++EV+DAR P + N + I K + V+NK DL E
Sbjct: 15 KARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH--IRGEKPCVKVLNKRDLADPELTE 72
Query: 62 -WAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKTIDK--DKVKVALIGYPNVGKST 118
W ++ + + I+ + + + +K+A ++ ++ ++G PNVGKST
Sbjct: 73 LWIAHLEQEKGVKAMAITTSNPQEVHKILELCRKLAPQREEIGKNIRTMIMGIPNVGKST 132
Query: 119 IINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVV------PIDDFDELVIKGG 172
IIN L G+ T P T+ + I L + L DTPG++ P F + G
Sbjct: 133 IINTLAGRAIAQTGNQPAVTRRQQRINLQNGIVLSDTPGILWPKVENPHSGF--RLAATG 190
Query: 173 FPADKIEEPVKPALKLIRRILETRKEALTEKFDIREFRDEE-DILRKIGERRGIIREGGE 231
D E + A + + + E L E++ I E + + +++ +IG +RG +R G
Sbjct: 191 AVKDTAMEYDEVAFYTVEYLAKHYPERLKERYQIDELPETDVELMEEIGRKRGALRAGAR 250
Query: 232 VDIEETARWFLREWQTG 248
VD+ + + L E + G
Sbjct: 251 VDLHKASEILLHELRQG 267
>gi|6321339 Ygl099wp [Saccharomyces cerevisiae]
>gi|1723894|sp|P53145|YGJ9_YEAST HYPOTHETICAL
GTP-BINDING PROTEIN IN SEH1-PRP20 INTERGENIC REGION
>gi|2131584|pir||S64106 hypothetical protein YGL099w -
yeast (Saccharomyces cerevisiae)
>gi|1322637|emb|CAA96805.1| (Z72621) ORF YGL099w
[Saccharomyces cerevisiae]
Length = 640
Score = 92.4 bits (226), Expect = 7e-18
Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 71/313 (22%)
Query: 5 KAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESG--KKLLIVMNKADLVPKE- 61
+ W+ + V+ +D+VV++VDAR+P+ R+ LER V ES K L+++NKADL+ K+
Sbjct: 186 EVWKQLWRVVERSDLVVQIVDARNPLLFRSVDLERYVKESDDRKANLLLVNKADLLTKKQ 245
Query: 62 ---WAEEYKKRSEIPVIFISA------------------------RERKGTGILRKELKK 94
WA+ + ++ I F SA +++G K ++K
Sbjct: 246 RIAWAKYFISKN-ISFTFYSALRANQLLEKQKEMGEDYREQDFEEADKEGFDADEKVMEK 304
Query: 95 MAKTIDKDK------------------------VKVALIGYPNVGKSTIINVLKGKHAVG 130
+ K + D+ + + L+GYPNVGKS+ IN L G V
Sbjct: 305 V-KILSIDQLEELFLSKAPNEPLLPPLPGQPPLINIGLVGYPNVGKSSTINSLVGAKKVS 363
Query: 131 TAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDF----DELVIKGGFPADKIEEPVKPAL 186
+ PG TK I+L+ + L D PG+V +F ELV G P D++ + + PA
Sbjct: 364 VSSTPGKTKHFQTIKLSDSVMLCDCPGLV-FPNFAYNKGELVCNGVLPIDQLRDYIGPAG 422
Query: 187 KLIRRILETRKEALTEKFDIREFRDE---------EDILRKIGERRGIIREG-GEVDIEE 236
+ RI + EA+ + RDE +++L RG + +G G D
Sbjct: 423 LVAERIPKYYIEAIYGIHIQTKSRDEGGNGDIPTAQELLVAYARARGYMTQGYGSADEPR 482
Query: 237 TARWFLREWQTGR 249
+R+ L+++ G+
Sbjct: 483 ASRYILKDYVNGK 495
>gb|AAD15335.1| (AC004044) hypothetical protein [Arabidopsis thaliana]
>gi|7269764|emb|CAB77764.1| (AL161495) hypothetical
protein [Arabidopsis thaliana]
Length = 375
Score = 90.9 bits (222), Expect = 2e-17
Identities = 77/266 (28%), Positives = 132/266 (48%), Gaps = 28/266 (10%)
Query: 5 KAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKE--- 61
K + ++E + D+V+EV DAR P+ T + K++ + +K ++V+N+ D++ +
Sbjct: 108 KTEKELREQLKLMDVVIEVRDARIPLSTTHPKMDAWL--GNRKRILVLNREDMISNDDRN 165
Query: 62 -WAEEYKKRSEIPVIFISARERKGT---GILRKEL------KKMAKTIDKDKVKVALIGY 111
WA + K+ I VIF + + G G L K L K+ K + V+ +IGY
Sbjct: 166 DWARYFAKQG-IKVIFTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGY 224
Query: 112 PNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPIDDFDELVIKG 171
PNVGKS++IN L + AP PG T+ ++L K L LLD+PG++P+ D+
Sbjct: 225 PNVGKSSLINRLLKRKICAAAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIK 284
Query: 172 GFPADKIEEPVKP-------ALKLIRRILETRKEALTEKFDIREFRDEEDILRKIGERRG 224
D I E ++++ RI E +AL ++ I+ E + +K + G
Sbjct: 285 LAICDDIGEKAYDFTDVAGILVQMLARIPEVGAKALYNRYKIQL---EGNCGKKFVKTLG 341
Query: 225 IIREGGEVDIEETARWFLREWQTGRF 250
+ GG D + A L +++ G+F
Sbjct: 342 LNLFGG--DSHQAAFRILTDFRKGKF 365
>pir||S75087 hypothetical protein slr0267 - Synechocystis sp. (strain PCC 6803)
>gi|1653032|dbj|BAA17949.1| (D90910) hypothetical
protein [Synechocystis sp.]
Length = 279
Score = 89.3 bits (218), Expect = 6e-17
Identities = 52/169 (30%), Positives = 97/169 (56%), Gaps = 14/169 (8%)
Query: 5 KAWRIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKEWAE 64
KA R ++E + + D+V+EV+DAR P+ +++ + V E K LI++N+ D++ E E
Sbjct: 13 KAERQLREQLNKVDVVLEVIDARIPLASQHPDVPLWVGEKPK--LIILNRVDMITPELQE 70
Query: 65 EYK---KRSEIPVIFISARERKGTGILRKELKKMAKTIDKDK---------VKVALIGYP 112
++ ++ V + +A++ G + K ++ K +++ + V+ ++G+P
Sbjct: 71 QWLTWFRQQNQTVYYANAKQGTGVKAISKAAQQAGKAVNERRQRRGMQPRPVRAVVMGFP 130
Query: 113 NVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVPI 161
NVGKS +IN L G+ V +A G T+ IR++ L LLD+PGV+P+
Sbjct: 131 NVGKSALINRLLGRKVVESARRAGVTRQLRWIRISDSLELLDSPGVIPL 179
>dbj|BAA92116.1| (AK002163) unnamed protein product [Homo sapiens]
Length = 642
Score = 71.8 bits (173), Expect = 1e-11
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 88 LRKELKKMAKTIDKDKVKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLT 147
L KEL K D ++ V L+GYPNVGKS+ IN + G V + PG+TK + +
Sbjct: 372 LFKELHTGRKVKD-GQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHFQTLYVE 430
Query: 148 KRLWLLDTPGVVP---IDDFDELVIKGGFPADKIEEPVKPALKLIRRILETRKEALTEKF 204
L L D PG+V + E+ G P D++ + V P + + I EA T
Sbjct: 431 PGLCLCDCPGLVMPSFVSTKAEMTCSGILPIDQMRDHVPPVSLVCQNIPRHVLEA-TYGI 489
Query: 205 DIREFRDEED---------ILRKIGERRGIIREGGEVDIEETARWFLREWQTGR 249
+I R++ED +L G RG + G+ D +AR+ L+++ +G+
Sbjct: 490 NIITPREDEDPHRPPTSEELLTAYGYMRGFMTAHGQPDQPRSARYILKDYVSGK 543
>sp|O67749|ENGA_AQUAE PROBABLE GTP-BINDING PROTEIN ENGA >gi|7450585|pir||A70465 probable
GTP binding protein - Aquifex aeolicus
>gi|2984183|gb|AAC07715.1| (AE000763) GTP binding
protein Era [Aquifex aeolicus]
Length = 433
Score = 71.4 bits (172), Expect = 1e-11
Identities = 53/161 (32%), Positives = 89/161 (54%), Gaps = 12/161 (7%)
Query: 8 RIVKEVIGEADIVVEVVDARDPIGTRNRKLERMVIESGKKLLIVMNKADLVPKEW--AEE 65
++V++ I +AD+++ VVD ++ + ++++ + + K+L+V+NK D + +E AE
Sbjct: 74 KVVEQEIPKADVILFVVDGKEGLNPLDQEIAKYLYPYADKVLLVVNKIDNLRQEKNVAEF 133
Query: 66 YKKRSEIPVIFISARERKGTGILRKELKKMAK-----TIDKDKVKVALIGYPNVGKSTII 120
Y E + ISA+ KG G L E+ K K T+++ +KVA IG PNVGKS+++
Sbjct: 134 YTLGFE-KIFPISAQHGKGVGELLDEVVKYLKEEKVETVEEG-IKVAFIGRPNVGKSSLV 191
Query: 121 NVLKGKHAVGTAPIPGYTKGKHLIRL---TKRLWLLDTPGV 158
N + V +PI G T+ I K L+DT GV
Sbjct: 192 NAILKDERVIVSPIAGTTRDAIEIPFRWKDKNFILIDTAGV 232
>pir||S40612 myosin-related protein - slime mold (Physarum polycephalum)
>gi|511053|emb|CAA79924.1| (Z21878) myosin-related
protein [Physarum polycephalum]
Length = 341
Score = 69.5 bits (167), Expect = 6e-11
Identities = 49/141 (34%), Positives = 74/141 (51%), Gaps = 32/141 (22%)
Query: 11 KEVIGEADIVVEVVDARDPIGTRNRKLERMVIES--GKKLLIVMNKADLVPKEWAEE--- 65
K+V+ AD+++EV+DARDP+G R +E + KK+++++NK DLVPK+ E+
Sbjct: 159 KKVVESADVIIEVLDARDPMGCRCPDVENTIATKYPNKKIILLLNKIDLVPKQNVEKWMA 218
Query: 66 YKKRSEIPVIFISARERKGTGILRKE-------------------------LKKMAKT-I 99
Y + S V F S+ ++KG I KE LK A+T
Sbjct: 219 YLRNSYPTVAFKSSTQKKGK-ISHKESKFTKATNSDLMGSESLGGDALLQLLKHYARTGT 277
Query: 100 DKDKVKVALIGYPNVGKSTII 120
+ V LIG+PNVGKS++I
Sbjct: 278 IRTSTTVGLIGFPNVGKSSVI 298
>dbj|BAB14161.1| (AK022657) unnamed protein product [Homo sapiens]
Length = 148
Score = 69.5 bits (167), Expect = 6e-11
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 43 ESGKKLLIVMNKADLVPKE---WAEEYKKRSEIPVIFISARERKGTGILRKELKKMAKTI 99
E KKL++V+ K DL PKE W + R+E+P + AR + + L ++
Sbjct: 9 EGNKKLVLVLKKIDLDPKEVVKWLDYL--RNELPTVAFKARTQHQVSFGAENLMRVLGNY 66
Query: 100 D-----KDKVKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLD 154
+ + + ++G PN+GKS++I LK HA IPG TK + L K + LLD
Sbjct: 67 CCLGEMRTHIHMDIVGLPNIGKSSLIKSLKHSHACSVGAIPGVTKFMQEVYLDKFIRLLD 126
Query: 155 TPGVVP 160
P +VP
Sbjct: 127 APAIVP 132
>emb|CAB38462.1| (AL035632) /prediction=(method:""genefinder"", version:""084"",
score:""113.36"")~/prediction=(method:""genscan"",
version:""1.0"",
score:""309.87"")~/match=(desc:""HYPOTHETICAL
GTP-BINDING PROTEIN IN SEH1-PRP20 INTERGENIC REGION"",
species:""Saccharom> >gi|7290165|gb|AAF45628.1|
(AE003421) EG:BACN32G11.5 gene product [Drosophila
melanogaster]
Length = 606
Score = 69.1 bits (166), Expect = 8e-11
Identities = 49/158 (31%), Positives = 79/158 (49%), Gaps = 13/158 (8%)
Query: 104 VKVALIGYPNVGKSTIINVLKGKHAVGTAPIPGYTKGKHLIRLTKRLWLLDTPGVVP--- 160
V V ++GYPNVGKS+ IN L V + PG TK + L K + L D PG+V
Sbjct: 338 VTVGMVGYPNVGKSSTINSLMTVKKVSVSATPGKTKRFQTLFLDKDILLCDCPGLVMPSF 397
Query: 161 IDDFDELVIKGGFPADKIEEPVKPALKLI-----RRILETRKEALTEK----FDIREFRD 211
+ ++++ G P D++ + V PA+ L+ R +LE + + K D+
Sbjct: 398 VLTKADMLLNGILPIDQMRDHV-PAVNLLCERIPRHVLEDKYGIVIAKPLEGEDMERPPH 456
Query: 212 EEDILRKIGERRGIIREGGEVDIEETARWFLREWQTGR 249
E++L G RG + G+ D +AR+ L+++ GR
Sbjct: 457 SEELLLAYGYNRGFMTSNGQPDQARSARYVLKDYVNGR 494
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.141 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137711795
Number of Sequences: 2977
Number of extensions: 6240508
Number of successful extensions: 19989
Number of sequences better than 1.0e-10: 39
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 19882
Number of HSP's gapped (non-prelim): 48
length of query: 355
length of database: 189,106,746
effective HSP length: 55
effective length of query: 300
effective length of database: 156,189,961
effective search space: 46856988300
effective search space used: 46856988300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)