BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0923 (PAB0923) DE:Hypothetical protein
(363 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75050 hypothetical protein PAB0923 - Pyrococcus abyssi (st... 723 0.0
pir||E71109 hypothetical protein PH0644 - Pyrococcus horikoshii ... 581 e-165
gi|11499760 conserved hypothetical protein [Archaeoglobus fulgid... 207 1e-52
sp|Q57880|Y438_METJA HYPOTHETICAL PROTEIN MJ0438 >gi|2128006|pir... 194 2e-48
pir||E72640 hypothetical protein APE0557 - Aeropyrum pernix (str... 156 3e-37
sp|Q58120|Y710_METJA HYPOTHETICAL PROTEIN MJ0710 >gi|2128028|pir... 82 1e-14
pir||G71140 hypothetical protein PH0338 - Pyrococcus horikoshii ... 69 8e-11
>pir||G75050 hypothetical protein PAB0923 - Pyrococcus abyssi (strain Orsay)
>gi|5458813|emb|CAB50300.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 363
Score = 723 bits (1845), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MLKLLLTTAQGIEDLASREVLNLLGDSVVRIEEKPFNVEGRILVEVKEKEYKDEKGRKRP 60
MLKLLLTTAQGIEDLASREVLNLLGDSVVRIEEKPFNVEGRILVEVKEKEYKDEKGRKRP
Sbjct: 1 MLKLLLTTAQGIEDLASREVLNLLGDSVVRIEEKPFNVEGRILVEVKEKEYKDEKGRKRP 60
Query: 61 FDFATYLNENSRLLHRVIVEIASTKFEGIEREDPEKALKRIEDFVSEIPVEKFVKVSESF 120
FDFATYLNENSRLLHRVIVEIASTKFEGIEREDPEKALKRIEDFVSEIPVEKFVKVSESF
Sbjct: 61 FDFATYLNENSRLLHRVIVEIASTKFEGIEREDPEKALKRIEDFVSEIPVEKFVKVSESF 120
Query: 121 AVRSFREGEHEVTSVDIARIVGKAIFERLSRFGTPRVNLDHPTVIFRAELIGEAFFLGID 180
AVRSFREGEHEVTSVDIARIVGKAIFERLSRFGTPRVNLDHPTVIFRAELIGEAFFLGID
Sbjct: 121 AVRSFREGEHEVTSVDIARIVGKAIFERLSRFGTPRVNLDHPTVIFRAELIGEAFFLGID 180
Query: 181 TTGDHSLHRRPWRVYDHPAHLKSSIANALIELAQPEGSFIDPFCGSGTIPIELALRGYEG 240
TTGDHSLHRRPWRVYDHPAHLKSSIANALIELAQPEGSFIDPFCGSGTIPIELALRGYEG
Sbjct: 181 TTGDHSLHRRPWRVYDHPAHLKSSIANALIELAQPEGSFIDPFCGSGTIPIELALRGYEG 240
Query: 241 KIICLEKYHKHLNGAKMNALAAGVYDKIEFILGDATRLSEYLESVDFAVSNLPYGLKIGR 300
KIICLEKYHKHLNGAKMNALAAGVYDKIEFILGDATRLSEYLESVDFAVSNLPYGLKIGR
Sbjct: 241 KIICLEKYHKHLNGAKMNALAAGVYDKIEFILGDATRLSEYLESVDFAVSNLPYGLKIGR 300
Query: 301 RSMIPELYSKFLSELAKVLEKRGVFITTEKNAIERAIEENGFKIIHHRLIGHGGLRVHAY 360
RSMIPELYSKFLSELAKVLEKRGVFITTEKNAIERAIEENGFKIIHHRLIGHGGLRVHAY
Sbjct: 301 RSMIPELYSKFLSELAKVLEKRGVFITTEKNAIERAIEENGFKIIHHRLIGHGGLRVHAY 360
Query: 361 VIE 363
VIE
Sbjct: 361 VIE 363
>pir||E71109 hypothetical protein PH0644 - Pyrococcus horikoshii
>gi|3257052|dbj|BAA29735.1| (AP000003) 364aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 364
Score = 581 bits (1481), Expect = e-165
Identities = 282/363 (77%), Positives = 325/363 (88%), Gaps = 2/363 (0%)
Query: 2 LKLLLTTAQGIEDLASREVLNLLGDSVVRIEEKPFNVEGRILVEVKEKEYKDEKGRKRPF 61
++LLLTTAQGIED+A +E++ LL ++ V I+EKPFNVEGR+LVEVKE Y DEKGRKRPF
Sbjct: 1 MRLLLTTAQGIEDIAKKEIMELLKENTVTIQEKPFNVEGRLLVEVKETFYTDEKGRKRPF 60
Query: 62 DFATYLNENSRLLHRVIVEIASTKFEGIEREDPEKALKRIEDFVSEIPVEKFVKVSESFA 121
+FATYLNE S+ LHRVI+EIAS +F+GI E+PEKALKRIE+F IPVE+F+KV+ESFA
Sbjct: 61 EFATYLNEKSKTLHRVIIEIASHEFKGITEENPEKALKRIEEFTVNIPVERFIKVTESFA 120
Query: 122 VRSFREGEHEVTSVDIARIVGKAIFERLSRFGTPRVNLDHPTVIFRAELIGEAFFLGIDT 181
VR+FR+GEH +TSVDIAR+VGKAIF+RLSR G+P VNLDHP+ I RAELI EAFFLGIDT
Sbjct: 121 VRAFRKGEHTITSVDIARVVGKAIFDRLSRIGSPIVNLDHPSTIVRAELINEAFFLGIDT 180
Query: 182 TGDHSLHRRPWRVYDHPAHLKSSIANALIELAQPE--GSFIDPFCGSGTIPIELALRGYE 239
TGDHSLHRRPWRVYDHPAHLK+SIANALIELA+ E SFIDPFCGSGTIPIELALRGY+
Sbjct: 181 TGDHSLHRRPWRVYDHPAHLKASIANALIELAEVEDGASFIDPFCGSGTIPIELALRGYQ 240
Query: 240 GKIICLEKYHKHLNGAKMNALAAGVYDKIEFILGDATRLSEYLESVDFAVSNLPYGLKIG 299
G+IICLEK+ KHLNGAKMNALAAGV+DKIEFI GDA RLS+Y++ VDFAVSNLPYGLKIG
Sbjct: 241 GRIICLEKFAKHLNGAKMNALAAGVFDKIEFIKGDARRLSKYVDEVDFAVSNLPYGLKIG 300
Query: 300 RRSMIPELYSKFLSELAKVLEKRGVFITTEKNAIERAIEENGFKIIHHRLIGHGGLRVHA 359
R+SMIP LY +F EL+KVL+KRGVFITTEK AIE+AIEE GFKI H+R+IGHGGLRVH
Sbjct: 301 RKSMIPSLYERFFDELSKVLQKRGVFITTEKEAIEKAIEEVGFKITHYRIIGHGGLRVHT 360
Query: 360 YVI 362
YVI
Sbjct: 361 YVI 363
>gi|11499760 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6137242|sp|O28105|YL78_ARCFU HYPOTHETICAL PROTEIN
AF2178 >gi|7483218|pir||B69522 conserved hypothetical
protein AF2178 - Archaeoglobus fulgidus
>gi|2648346|gb|AAB89073.1| (AE000954) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 392
Score = 207 bits (522), Expect = 1e-52
Identities = 147/387 (37%), Positives = 207/387 (52%), Gaps = 65/387 (16%)
Query: 1 MLKLLLTTAQGIEDLASREVLNLLGDSVVRIEEKPFNVEGRILVEVKEKEYKDEKGRKRP 60
+++ T G+ED+A++EV + G V I E+ GRI + EK
Sbjct: 30 VVRFYATLTPGLEDVAAKEVESF-GCKVEEIRER----RGRIF-------FSGEKSA--- 74
Query: 61 FDFATYLNENSRLLHRVIVEIASTKFEGIEREDPEKALKRIEDFVSEIPVEKFVKVSESF 120
LN SR L R+ V + + EG++ D A+K + DF FVK +SF
Sbjct: 75 ---IPLLNHFSRTLERLNVLLLRCEVEGLD--DIYAAVKGL-DF-------SFVK-GKSF 120
Query: 121 AVRSFREGEHEVTSVDIARIVGKAIFER-LSRFGTP-RVNLDHPTVIFRAELIGEAFFLG 178
A+RS R GEH+ TS+DIAR+ G+A+ + + +G +VNL+ P VI R EL+ F+G
Sbjct: 121 AIRSLRVGEHDFTSMDIARVAGQAVIDSFMESYGERLKVNLNQPDVIIRVELVDSELFVG 180
Query: 179 IDTTGDHSLHRRPWRVYDHPAHLKSSIANALIELA--QPEGSFIDPFCGSGTIPIELA-- 234
+DTTGD ++H+R WRVY+HPAHL ++IA ++ +A + + S IDP CGSGTIPIE A
Sbjct: 181 VDTTGDDAMHKRWWRVYNHPAHLNAAIACGMLRIADWKVDESLIDPMCGSGTIPIEAALM 240
Query: 235 ------LRGYEGKIIC-----------------LEKYHKHLNGAKMNALAAGVYDKIEFI 271
LR + K +C +EK+ KHL GA NA+ AGV D IEF
Sbjct: 241 VRNVPNLRDFAYKKLCEWELAFEPNEVRLKLYGMEKFRKHLVGAIRNAVNAGVADTIEFR 300
Query: 272 LGDATRLS-EYLESVDFAVSNLPYGLKIGRRSMIPELYSKFLSELAKVLEK--RGVFITT 328
GDAT ++ EY D ++N PYGL+I R+ I LY F + + + R V IT
Sbjct: 301 QGDATEMTGEY----DVIITNPPYGLRIHRKGAIERLYHSFARAAKRCMNQNSRLVIITA 356
Query: 329 EKNAIERAIEENGFKIIHHRLIGHGGL 355
E A EE G + H R + +GGL
Sbjct: 357 EHRVFANAAEEAGLQCTHERFVKYGGL 383
>sp|Q57880|Y438_METJA HYPOTHETICAL PROTEIN MJ0438 >gi|2128006|pir||F64354 hypothetical
protein homolog MJ0438 - Methanococcus jannaschii
>gi|1591142|gb|AAB98426.1| (U67495) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 381
Score = 194 bits (487), Expect = 2e-48
Identities = 129/362 (35%), Positives = 187/362 (51%), Gaps = 53/362 (14%)
Query: 47 KEKEYKDEKGR---KRPFDFATYLNENSRLLHRVIVEIASTKFEGIEREDPEKALKRIED 103
K KE ++ KGR +N SR + R+ + + E P AL I
Sbjct: 25 KIKEIRENKGRIFFSGDLKLIPKINYLSRTIERMNILLH-------REEIPNIALDDIYK 77
Query: 104 FVSEIPVEKFVKVSESFAVRSFREGEHEVTSVDIARIVGKAIFERLSRFGTPR--VNLDH 161
V I +++K ++SFA+R R GEH TS+DI R+ G+A+ + R R VNLD
Sbjct: 78 RVYNIDWTEWIKENQSFAIRPLRAGEHNFTSIDIGRVAGEAVIKSYQRDKNIRLKVNLDE 137
Query: 162 PTVIFRAELIGEAFFLGIDTTGDHSLHRRPWRVYDHPAHLKSSIANALIELA--QPEGSF 219
P VI R E+I + +GIDTTGD +L +R +RV++HPAHL ++IA++L+ L+ + +
Sbjct: 138 PDVIVRVEVIFDELIVGIDTTGDIALDKRGYRVFNHPAHLNATIASSLVYLSDWKDDEML 197
Query: 220 IDPFCGSGTIPIELALR----------------------GYE---------------GKI 242
+DP CGSGTIPIE AL GYE KI
Sbjct: 198 LDPMCGSGTIPIEGALMKRNIPPGKFRENKYGFKFIDIFGYELLDKIKKEIVENKNIYKI 257
Query: 243 ICLEKYHKHLNGAKMNALAAGVYDKIEFILGDATRLSEYLESVDFAVSNLPYGLKIGRRS 302
I L+K K+L+GAK NA A V D IEFI GDAT+L E D ++N PYG++IG +
Sbjct: 258 IGLDKNQKYLDGAKDNAKNAEVLDTIEFICGDATKLHEKFNESDVIIANPPYGIRIGSKR 317
Query: 303 MIPELYSKFLSELAKVL--EKRGVFITTEKNAIERAIEENGFKIIHHRLIGHGGLRVHAY 360
+ +LY +FLS +++ R + IT E + AI +N F++ + GGL +
Sbjct: 318 SVKKLYDEFLSSAKEIMHGSSRLIVITAEDKMFKDAIAKNNFEVKEEFNVMFGGLMTRVF 377
Query: 361 VI 362
+
Sbjct: 378 YL 379
>pir||E72640 hypothetical protein APE0557 - Aeropyrum pernix (strain K1)
>gi|5104210|dbj|BAA79525.1| (AP000060) 354aa long
hypothetical protein [Aeropyrum pernix]
Length = 354
Score = 156 bits (391), Expect = 3e-37
Identities = 118/371 (31%), Positives = 181/371 (47%), Gaps = 28/371 (7%)
Query: 2 LKLLLTTAQGIEDLASREVLNLLGDSVVRIEEKPFNVEGRILVEVKEKEYKDEKGRKRPF 61
++ L T G ED+ +RE++ + + V E+ GRI+ + P+
Sbjct: 1 MRFLATCNPGTEDVVAREIVEEVDSAKV---EEVGEYRGRIVF----------RSSGEPW 47
Query: 62 DFATYLNENSRLLHRVIVEIASTKFEGIEREDPEKALKRIEDFVSEIPVEKFVKVSESFA 121
A + R +H + +A E + L+ + + + +FA
Sbjct: 48 LVAEQIY-GLRSIHSASLLLAEA-----EVSPGREGLEEVWRAAYKSGAHLHIPYGATFA 101
Query: 122 VRSFREGE-HEVTSVDIARIVGKAIFERL--SRFGTPRVNLDHPTVIFRAELIGEAFFLG 178
VR R GE H TSV+IA VG A+ S P V L+ P V+ AE+ F LG
Sbjct: 102 VRGERIGEGHSYTSVEIASTVGDAVQRAAEESLGWRPMVRLNSPQVVLHAEVDIFTFRLG 161
Query: 179 IDTTGDHSLHRRPWRVYDHPAHLKSSIANALIEL--AQPEGSFIDPFCGSGTIPIELALR 236
+ TG+ S HRR +RVYDHPA LK+S+A ++ L A+ + +DP CG GT+ +E AL
Sbjct: 162 VLLTGERSRHRRRYRVYDHPAALKASLAYVMLRLAGARDGDTILDPMCGGGTVAVEAALL 221
Query: 237 GYEGKIICLEKYHKHLNGAKMNALAAGVYDKIEFILGDATRLSEYL--ESVDFAVSNLPY 294
++ C++ +H GA++NA +A V ++E DA L E L +SVD VSN PY
Sbjct: 222 FETSRVYCVDLNPRHTRGARLNAESARVGGRVEVYTWDARMLHELLGEDSVDRIVSNPPY 281
Query: 295 GLKIGRRSMIPELYSKFLSELAKVLEK--RGVFITTEKNAIERAIEENGFKIIHHRLIGH 352
G+++G + LY +F+ A+VL R IT E A+ A +G ++ R + H
Sbjct: 282 GIRLGDPVDVRILYREFMPSAARVLRSGGRAAIITAETKALVAAARSSGLRMAGARRVRH 341
Query: 353 GGLRVHAYVIE 363
G L V V+E
Sbjct: 342 GDLWVDIVVLE 352
>sp|Q58120|Y710_METJA HYPOTHETICAL PROTEIN MJ0710 >gi|2128028|pir||F64388 hypothetical
protein homolog MJ0710 - Methanococcus jannaschii
>gi|1591426|gb|AAB98704.1| (U67517) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 351
Score = 81.9 bits (199), Expect = 1e-14
Identities = 88/310 (28%), Positives = 141/310 (45%), Gaps = 30/310 (9%)
Query: 66 YLNENSRLLHRVIVEIASTKFEGIEREDPEKALKRIEDFVSEIPVEKFVKVSESFAVRSF 125
Y++E R++ R +E S D + +DFV+ I + S+S+AVR
Sbjct: 54 YIDEGHRIIFRYNLEEKSVDLVDKIVND---FINSFKDFVANIDYPD-IDESKSYAVRVL 109
Query: 126 REGEHEVT-SVDIARIVGKAIFERLSRFGTPRVNLDHPTVIFRAELIGEAFFLG----ID 180
+ + E T S+D RI K I + +VNL P ++ R ++ FF+ +
Sbjct: 110 KLHKDEFTKSIDSLRIE-KEIGGIIKLKTNAKVNLTKPDILVRVVILENTFFISNVLEMR 168
Query: 181 TTGDHSLHRRPWRVYDHPAHLKSSIANALIELAQ-PEGSFI-DPFCGSGTIPIELALRGY 238
+R R Y HP + +A A++ LA+ EG + DPFCG+G IE L G
Sbjct: 169 DREYFQKNRPHLRKYFHPGCMLPKLARAMVNLARVKEGDIVLDPFCGTGGFLIEAGLIG- 227
Query: 239 EGKIICLEKYHKHLNGAKMNALAAGVYDKIEFILG-DATRLSEYL-----ESVDFAVSNL 292
K+I + + +G +N + DK+ + DA + E+L E VD V++
Sbjct: 228 -AKLIGCDIDWRMASGTLINLEEYNLLDKVIKVKRLDAKYVKEFLNELNIEKVDAIVTDP 286
Query: 293 PYGLKIGRRSMIPELYSKFLSELAKVLEKRGVFITTEKNAIERAIEENG-FKI-IHHRLI 350
PYG+ ++ I K L L +V++ G F+ IE +E G +K+ IH LI
Sbjct: 287 PYGISTAKKGEI----EKILETLPEVIKDNGYFVFAYPKKIELDMELEGLYKVYIHKGLI 342
Query: 351 GHGGLRVHAY 360
H +H Y
Sbjct: 343 RH----IHVY 348
>pir||G71140 hypothetical protein PH0338 - Pyrococcus horikoshii
>gi|3256729|dbj|BAA29412.1| (AP000002) 329aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 329
Score = 69.1 bits (166), Expect = 8e-11
Identities = 79/280 (28%), Positives = 116/280 (41%), Gaps = 32/280 (11%)
Query: 98 LKRIEDFVSEIPVEKFVKVSESFAVRS--FREGEHEVTSVDIARIVGKAIFERLSRFGTP 155
+K I DF + + + +FAVR R HEV +D + +G I +
Sbjct: 67 IKDILDFAKGLEWRNII--NGTFAVRRERMRNCMHEVNDLD--KKIGGIIHSQ-----GL 117
Query: 156 RVNLDHPTVIFRAELIGEAFFLGIDTTG-------DHSLHRRPWRVYDHPAHLKSSIANA 208
RVNL P + R G +LGI D RRP + P L IA A
Sbjct: 118 RVNLSRPDTVVRV-YCGNKIWLGIRIREFKGKEFEDRKADRRP---FSRPIALPPRIARA 173
Query: 209 LIELAQPEGSFIDPFCGSGTIPIELALRGYEGKIICLEKYHKHLNGAKMNALAAGVYDKI 268
++ L + +DPF G+G + IE L G K+ L+ + GAK+N G+ D +
Sbjct: 174 MVNLTKATREVLDPFMGTGGMLIEAGLIGL--KVYGLDIREDMVEGAKINLEYYGIRDYV 231
Query: 269 EFILGDATRLSEYLESVDF--AVSNLPYGLKIGRRSMIPELYSKFLSELAKVLEKRGVFI 326
+ GDAT++ E F ++ PYG ELY + L + VLE R
Sbjct: 232 VKV-GDATKIEEVFPGKTFEAVATDPPYGNSTTLPMDRNELYKRSLESIHSVLEGRLAIA 290
Query: 327 TTEKNAIERAIEENGFKII---HHRLIGHGGLRVHAYVIE 363
E GFK++ + R+ H L + YV+E
Sbjct: 291 FPADFDARDVAESIGFKVLGRFYQRV--HSSLSRYFYVME 328
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128336796
Number of Sequences: 2977
Number of extensions: 5430151
Number of successful extensions: 13822
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13802
Number of HSP's gapped (non-prelim): 9
length of query: 363
length of database: 189,106,746
effective HSP length: 56
effective length of query: 307
effective length of database: 155,591,474
effective search space: 47766582518
effective search space used: 47766582518
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)