BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0926 (PAB0926) DE:EXONUCLEASE SBCD related
(214 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75051 exonuclease sbcd related PAB0926 - Pyrococcus abyssi... 429 e-119
pir||B71109 probable phosphoesterase (EC 3.1.-.-) PHAE027 - Pyro... 297 6e-80
pir||G71001 probable phosphoesterase (EC 3.1.-.-) PHLF004 - Pyro... 80 2e-14
gi|11498755 conserved hypothetical protein [Archaeoglobus fulgid... 77 1e-13
pir||A69108 probable phosphoesterase (EC 3.1.-.-) MTH1803 - Meth... 71 8e-12
pir||F75129 hypothetical protein PAB0562 - Pyrococcus abyssi (st... 68 9e-11
>pir||D75051 exonuclease sbcd related PAB0926 - Pyrococcus abyssi (strain Orsay)
>gi|5458818|emb|CAB50305.1| (AJ248287) EXONUCLEASE SBCD
related [Pyrococcus abyssi]
Length = 214
Score = 429 bits (1091), Expect = e-119
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MSIQDFSSYSFVFKTRLGRTLVLADPHLAFEPFKGINVRSKLEKKLANFIKSQDVDAVII 60
MSIQDFSSYSFVFKTRLGRTLVLADPHLAFEPFKGINVRSKLEKKLANFIKSQDVDAVII
Sbjct: 1 MSIQDFSSYSFVFKTRLGRTLVLADPHLAFEPFKGINVRSKLEKKLANFIKSQDVDAVII 60
Query: 61 LGDVKEEIGLSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDK 120
LGDVKEEIGLSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDK
Sbjct: 61 LGDVKEEIGLSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDK 120
Query: 121 EILFIHGHSRLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTPRIIVFPTINPFYEG 180
EILFIHGHSRLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTPRIIVFPTINPFYEG
Sbjct: 121 EILFIHGHSRLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTPRIIVFPTINPFYEG 180
Query: 181 MDLKQGVKLSPVLRGVREFEIIIPPGIYLSKVTI 214
MDLKQGVKLSPVLRGVREFEIIIPPGIYLSKVTI
Sbjct: 181 MDLKQGVKLSPVLRGVREFEIIIPPGIYLSKVTI 214
>pir||B71109 probable phosphoesterase (EC 3.1.-.-) PHAE027 - Pyrococcus
horikoshii >gi|3257049|dbj|BAA29732.1| (AP000003) 213aa
long hypothetical protein [Pyrococcus horikoshii]
Length = 213
Score = 297 bits (753), Expect = 6e-80
Identities = 138/211 (65%), Positives = 177/211 (83%), Gaps = 1/211 (0%)
Query: 5 DFSSYSFVFKTRLGRTLVLADPHLAFEPFKGINVRSKLEKKLANFIKSQDVDAVIILGDV 64
DFS YSF F+T+LG+TLV ADPHL FE F+GINVRSKLE KLA FI + DAVIILGDV
Sbjct: 3 DFSIYSFYFETKLGKTLVFADPHLGFERFRGINVRSKLEIKLAKFINEEKPDAVIILGDV 62
Query: 65 KEEIGLSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILF 124
KE+IGLS FTEK+L +FF+ L+++ +IITKGNHDG+IE+V +F+NV V+ +FLDK +LF
Sbjct: 63 KEDIGLSKFTEKILLDFFSLLRDVQVIITKGNHDGKIEEVTTKFENVNVVEFFLDKGLLF 122
Query: 125 IHGHSRLPDVKFKKIVMGHIHPSTIVSL-GRVKKKMKCFLRTPRIIVFPTINPFYEGMDL 183
+HGH LP+VKFKK++MGHIHPS ++S V++K+KCFLRT I+VFPTINPFYEG++
Sbjct: 123 VHGHKNLPNVKFKKVIMGHIHPSILISTESGVRRKVKCFLRTSDILVFPTINPFYEGINF 182
Query: 184 KQGVKLSPVLRGVREFEIIIPPGIYLSKVTI 214
+ G+K+SP+L+ +EFEIIIPPGIYL KV+I
Sbjct: 183 RDGIKMSPILKNYKEFEIIIPPGIYLKKVSI 213
>pir||G71001 probable phosphoesterase (EC 3.1.-.-) PHLF004 - Pyrococcus
horikoshii >gi|3257732|dbj|BAA30415.1| (AP000006) 228aa
long hypothetical protein [Pyrococcus horikoshii]
Length = 228
Score = 80.4 bits (195), Expect = 2e-14
Identities = 64/202 (31%), Positives = 101/202 (49%), Gaps = 17/202 (8%)
Query: 17 LGRTLVLADPHLAFEP--FKGINVRSKLEKKLANFIKS----QDVDAVIILGDVKEEIGL 70
+G+ LVLAD H+ FE +G KL + + +KS ++ +II GD+K
Sbjct: 13 IGKVLVLADIHIGFEESAIQGGMYIPKLLRDVIRDVKSIAMHENAKTLIINGDLKHSFTP 72
Query: 71 SGFTEKVLQEFFAELKEL--GIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILFIHGH 128
+ F E+KE+ +I+ KGNHD IE + RF NV+++ +HGH
Sbjct: 73 LKREFFEVGTFLREVKEVVDEVILVKGNHDTGIEWIKDRF-NVDIMESIEIGNWTIVHGH 131
Query: 129 SRLPDVKFKKIVMGHIHPSTIV--SLGRVKKKMKCFLRTPRIIVFPTINPFYEGMDLKQG 186
+ KF ++GH HP+ + +G + K + FLR IIV P +P+ G DL
Sbjct: 132 KEIEGNKF---IIGHEHPAIRLRDEVGAIVK-VPVFLRGEDIIVLPAFSPWAYGNDLTLN 187
Query: 187 VKLSPVLRG--VREFEIIIPPG 206
+SP+LRG + E+++ G
Sbjct: 188 GPISPILRGKDISNLEVLVTTG 209
>gi|11498755 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7428108|pir||B69394 probable phosphoesterase (EC
3.1.-.-) AF1155 - Archaeoglobus fulgidus
>gi|2649433|gb|AAB90090.1| (AE001024) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 222
Score = 77.3 bits (187), Expect = 1e-13
Identities = 52/193 (26%), Positives = 93/193 (47%), Gaps = 12/193 (6%)
Query: 17 LGRTLVLADPHLAFEPF---KGINVR----SKLEKKLANFIKSQDVDAVIILGDVKEEIG 69
+G T V+AD HL FE +G V +++ ++A+ ++ + +++ GD+K E
Sbjct: 14 VGNTAVIADLHLGFENVLQERGYAVPRMQVEEIKARVASIVEKYGIAKIVVAGDLKHEFS 73
Query: 70 LSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILFIHGHS 129
+ E F E + + + +GNHD + + + +E+ + L +HGH
Sbjct: 74 KNLPYEWEDVREFIESVNVELEVVRGNHDNYLAAILAEY-GIELKESVRVGDYLVVHGHK 132
Query: 130 RLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTPRI-IVFPTINPFYEGMDLKQGVK 188
D + +K++MGH HP+ V + C+L IV P +P G D+ QG
Sbjct: 133 ---DCEEEKVIMGHEHPAVKVRVRGALYTFPCYLVADGAKIVLPAFSPLMSGSDVLQGNF 189
Query: 189 LSPVLRGVREFEI 201
LSP+L+ R+ E+
Sbjct: 190 LSPILQKARKIEV 202
>pir||A69108 probable phosphoesterase (EC 3.1.-.-) MTH1803 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622935|gb|AAB86269.1| (AE000934) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 247
Score = 71.4 bits (172), Expect = 8e-12
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 29/208 (13%)
Query: 20 TLVLADPHLAFEPF---KGINVRSKLEKKLANFIKS-QDVDA---VIILGDVKEEIGLSG 72
++V+AD HL +E + +G+ V +++ I + +DV +II GD+K E G
Sbjct: 22 SMVIADLHLGYEQYLNTQGVMVPGFQFRRIIERIDAIRDVSGASGIIINGDLKHEFGRVS 81
Query: 73 FTE-----KVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILFIHG 127
+ E +++Q +++ II +GNHD I ++ + ++ V L HG
Sbjct: 82 WQENREIIRMMQYLEENFRDITII--RGNHDALIPYMS-QVSHLSVTETLKISCFLLAHG 138
Query: 128 HSRLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTP----RIIVFPTINPFYEGMDL 183
H D+ + I++GH HP + G +K+KCFL P +++V P+ N EG D+
Sbjct: 139 HVVPEDLDAETIIIGHEHPCVGLRSGERVEKIKCFLLGPFRDMKLLVMPSFNFVTEGSDI 198
Query: 184 KQGVKLSPVLR----------GVREFEI 201
LSP LR GV +FEI
Sbjct: 199 LHEDILSPFLRESELTEFLVYGVEDFEI 226
>pir||F75129 hypothetical protein PAB0562 - Pyrococcus abyssi (strain Orsay)
>gi|5458262|emb|CAB49751.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 229
Score = 67.9 bits (163), Expect = 9e-11
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 17 LGRTLVLADPHLAFEPF---KGINVRSKLEKKL---ANFIKSQDVDAVIILGDVKEEIGL 70
LG +V+AD H+ FE +G+ + L + + I+ + ++I GD+K
Sbjct: 13 LGNAMVIADLHIGFEESVAQEGVYIPKLLREIIDTTRRIIERERPKVLVINGDLKHSFTP 72
Query: 71 SGFTEKVLQEFFAELKEL--GIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILFIHGH 128
+ F E+KEL +++ KGNHD I + +F VE++ + HGH
Sbjct: 73 LKREFLEVGAFLREVKELVDEVVLVKGNHDTGINWIREKF-GVEIVESLEIRGWTIAHGH 131
Query: 129 SRLPDVKFKKIVMGHIHPSTIV--SLGRVKKKMKCFLRTPRIIVFPTINPFYEGMDLKQG 186
+ V+ K+++GH HPS + +G K+ FL+ I+V P +P+ G DL
Sbjct: 132 LK---VEGGKVIIGHEHPSIRLRDEVG-ASVKVPVFLKGSNILVLPAFSPWAYGNDLTVN 187
Query: 187 VKLSPVLR 194
+SPVLR
Sbjct: 188 EPISPVLR 195
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.146 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77521957
Number of Sequences: 2977
Number of extensions: 3201823
Number of successful extensions: 13176
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13165
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 189,106,746
effective HSP length: 52
effective length of query: 162
effective length of database: 157,985,422
effective search space: 25593638364
effective search space used: 25593638364
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)