BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0926 (PAB0926) DE:EXONUCLEASE SBCD related
         (214 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75051 exonuclease sbcd related PAB0926 - Pyrococcus abyssi...   429  e-119
pir||B71109 probable phosphoesterase (EC 3.1.-.-) PHAE027 - Pyro...   297  6e-80
pir||G71001 probable phosphoesterase (EC 3.1.-.-) PHLF004 - Pyro...    80  2e-14
gi|11498755 conserved hypothetical protein [Archaeoglobus fulgid...    77  1e-13
pir||A69108 probable phosphoesterase (EC 3.1.-.-) MTH1803 - Meth...    71  8e-12
pir||F75129 hypothetical protein PAB0562 - Pyrococcus abyssi (st...    68  9e-11

>pir||D75051 exonuclease sbcd related PAB0926 - Pyrococcus abyssi (strain Orsay)
           >gi|5458818|emb|CAB50305.1| (AJ248287) EXONUCLEASE SBCD
           related [Pyrococcus abyssi]
           Length = 214
           
 Score =  429 bits (1091), Expect = e-119
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MSIQDFSSYSFVFKTRLGRTLVLADPHLAFEPFKGINVRSKLEKKLANFIKSQDVDAVII 60
           MSIQDFSSYSFVFKTRLGRTLVLADPHLAFEPFKGINVRSKLEKKLANFIKSQDVDAVII
Sbjct: 1   MSIQDFSSYSFVFKTRLGRTLVLADPHLAFEPFKGINVRSKLEKKLANFIKSQDVDAVII 60

Query: 61  LGDVKEEIGLSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDK 120
           LGDVKEEIGLSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDK
Sbjct: 61  LGDVKEEIGLSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDK 120

Query: 121 EILFIHGHSRLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTPRIIVFPTINPFYEG 180
           EILFIHGHSRLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTPRIIVFPTINPFYEG
Sbjct: 121 EILFIHGHSRLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTPRIIVFPTINPFYEG 180

Query: 181 MDLKQGVKLSPVLRGVREFEIIIPPGIYLSKVTI 214
           MDLKQGVKLSPVLRGVREFEIIIPPGIYLSKVTI
Sbjct: 181 MDLKQGVKLSPVLRGVREFEIIIPPGIYLSKVTI 214


>pir||B71109 probable phosphoesterase (EC 3.1.-.-) PHAE027 - Pyrococcus
           horikoshii >gi|3257049|dbj|BAA29732.1| (AP000003) 213aa
           long hypothetical protein [Pyrococcus horikoshii]
           Length = 213
           
 Score =  297 bits (753), Expect = 6e-80
 Identities = 138/211 (65%), Positives = 177/211 (83%), Gaps = 1/211 (0%)

Query: 5   DFSSYSFVFKTRLGRTLVLADPHLAFEPFKGINVRSKLEKKLANFIKSQDVDAVIILGDV 64
           DFS YSF F+T+LG+TLV ADPHL FE F+GINVRSKLE KLA FI  +  DAVIILGDV
Sbjct: 3   DFSIYSFYFETKLGKTLVFADPHLGFERFRGINVRSKLEIKLAKFINEEKPDAVIILGDV 62

Query: 65  KEEIGLSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILF 124
           KE+IGLS FTEK+L +FF+ L+++ +IITKGNHDG+IE+V  +F+NV V+ +FLDK +LF
Sbjct: 63  KEDIGLSKFTEKILLDFFSLLRDVQVIITKGNHDGKIEEVTTKFENVNVVEFFLDKGLLF 122

Query: 125 IHGHSRLPDVKFKKIVMGHIHPSTIVSL-GRVKKKMKCFLRTPRIIVFPTINPFYEGMDL 183
           +HGH  LP+VKFKK++MGHIHPS ++S    V++K+KCFLRT  I+VFPTINPFYEG++ 
Sbjct: 123 VHGHKNLPNVKFKKVIMGHIHPSILISTESGVRRKVKCFLRTSDILVFPTINPFYEGINF 182

Query: 184 KQGVKLSPVLRGVREFEIIIPPGIYLSKVTI 214
           + G+K+SP+L+  +EFEIIIPPGIYL KV+I
Sbjct: 183 RDGIKMSPILKNYKEFEIIIPPGIYLKKVSI 213


>pir||G71001 probable phosphoesterase (EC 3.1.-.-) PHLF004 - Pyrococcus
           horikoshii >gi|3257732|dbj|BAA30415.1| (AP000006) 228aa
           long hypothetical protein [Pyrococcus horikoshii]
           Length = 228
           
 Score = 80.4 bits (195), Expect = 2e-14
 Identities = 64/202 (31%), Positives = 101/202 (49%), Gaps = 17/202 (8%)

Query: 17  LGRTLVLADPHLAFEP--FKGINVRSKLEKKLANFIKS----QDVDAVIILGDVKEEIGL 70
           +G+ LVLAD H+ FE    +G     KL + +   +KS    ++   +II GD+K     
Sbjct: 13  IGKVLVLADIHIGFEESAIQGGMYIPKLLRDVIRDVKSIAMHENAKTLIINGDLKHSFTP 72

Query: 71  SGFTEKVLQEFFAELKEL--GIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILFIHGH 128
                  +  F  E+KE+   +I+ KGNHD  IE +  RF NV+++          +HGH
Sbjct: 73  LKREFFEVGTFLREVKEVVDEVILVKGNHDTGIEWIKDRF-NVDIMESIEIGNWTIVHGH 131

Query: 129 SRLPDVKFKKIVMGHIHPSTIV--SLGRVKKKMKCFLRTPRIIVFPTINPFYEGMDLKQG 186
             +   KF   ++GH HP+  +   +G + K +  FLR   IIV P  +P+  G DL   
Sbjct: 132 KEIEGNKF---IIGHEHPAIRLRDEVGAIVK-VPVFLRGEDIIVLPAFSPWAYGNDLTLN 187

Query: 187 VKLSPVLRG--VREFEIIIPPG 206
             +SP+LRG  +   E+++  G
Sbjct: 188 GPISPILRGKDISNLEVLVTTG 209


>gi|11498755 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7428108|pir||B69394 probable phosphoesterase (EC
           3.1.-.-) AF1155 - Archaeoglobus fulgidus
           >gi|2649433|gb|AAB90090.1| (AE001024) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 222
           
 Score = 77.3 bits (187), Expect = 1e-13
 Identities = 52/193 (26%), Positives = 93/193 (47%), Gaps = 12/193 (6%)

Query: 17  LGRTLVLADPHLAFEPF---KGINVR----SKLEKKLANFIKSQDVDAVIILGDVKEEIG 69
           +G T V+AD HL FE     +G  V      +++ ++A+ ++   +  +++ GD+K E  
Sbjct: 14  VGNTAVIADLHLGFENVLQERGYAVPRMQVEEIKARVASIVEKYGIAKIVVAGDLKHEFS 73

Query: 70  LSGFTEKVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILFIHGHS 129
            +   E      F E   + + + +GNHD  +  +   +  +E+       + L +HGH 
Sbjct: 74  KNLPYEWEDVREFIESVNVELEVVRGNHDNYLAAILAEY-GIELKESVRVGDYLVVHGHK 132

Query: 130 RLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTPRI-IVFPTINPFYEGMDLKQGVK 188
              D + +K++MGH HP+  V +        C+L      IV P  +P   G D+ QG  
Sbjct: 133 ---DCEEEKVIMGHEHPAVKVRVRGALYTFPCYLVADGAKIVLPAFSPLMSGSDVLQGNF 189

Query: 189 LSPVLRGVREFEI 201
           LSP+L+  R+ E+
Sbjct: 190 LSPILQKARKIEV 202


>pir||A69108 probable phosphoesterase (EC 3.1.-.-) MTH1803 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622935|gb|AAB86269.1| (AE000934) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 247
           
 Score = 71.4 bits (172), Expect = 8e-12
 Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 29/208 (13%)

Query: 20  TLVLADPHLAFEPF---KGINVRSKLEKKLANFIKS-QDVDA---VIILGDVKEEIGLSG 72
           ++V+AD HL +E +   +G+ V     +++   I + +DV     +II GD+K E G   
Sbjct: 22  SMVIADLHLGYEQYLNTQGVMVPGFQFRRIIERIDAIRDVSGASGIIINGDLKHEFGRVS 81

Query: 73  FTE-----KVLQEFFAELKELGIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILFIHG 127
           + E     +++Q      +++ II  +GNHD  I  ++ +  ++ V         L  HG
Sbjct: 82  WQENREIIRMMQYLEENFRDITII--RGNHDALIPYMS-QVSHLSVTETLKISCFLLAHG 138

Query: 128 HSRLPDVKFKKIVMGHIHPSTIVSLGRVKKKMKCFLRTP----RIIVFPTINPFYEGMDL 183
           H    D+  + I++GH HP   +  G   +K+KCFL  P    +++V P+ N   EG D+
Sbjct: 139 HVVPEDLDAETIIIGHEHPCVGLRSGERVEKIKCFLLGPFRDMKLLVMPSFNFVTEGSDI 198

Query: 184 KQGVKLSPVLR----------GVREFEI 201
                LSP LR          GV +FEI
Sbjct: 199 LHEDILSPFLRESELTEFLVYGVEDFEI 226


>pir||F75129 hypothetical protein PAB0562 - Pyrococcus abyssi (strain Orsay)
           >gi|5458262|emb|CAB49751.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 229
           
 Score = 67.9 bits (163), Expect = 9e-11
 Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 15/188 (7%)

Query: 17  LGRTLVLADPHLAFEPF---KGINVRSKLEKKL---ANFIKSQDVDAVIILGDVKEEIGL 70
           LG  +V+AD H+ FE     +G+ +   L + +      I+ +    ++I GD+K     
Sbjct: 13  LGNAMVIADLHIGFEESVAQEGVYIPKLLREIIDTTRRIIERERPKVLVINGDLKHSFTP 72

Query: 71  SGFTEKVLQEFFAELKEL--GIIITKGNHDGRIEDVAYRFDNVEVLPYFLDKEILFIHGH 128
                  +  F  E+KEL   +++ KGNHD  I  +  +F  VE++     +     HGH
Sbjct: 73  LKREFLEVGAFLREVKELVDEVVLVKGNHDTGINWIREKF-GVEIVESLEIRGWTIAHGH 131

Query: 129 SRLPDVKFKKIVMGHIHPSTIV--SLGRVKKKMKCFLRTPRIIVFPTINPFYEGMDLKQG 186
            +   V+  K+++GH HPS  +   +G    K+  FL+   I+V P  +P+  G DL   
Sbjct: 132 LK---VEGGKVIIGHEHPSIRLRDEVG-ASVKVPVFLKGSNILVLPAFSPWAYGNDLTVN 187

Query: 187 VKLSPVLR 194
             +SPVLR
Sbjct: 188 EPISPVLR 195


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.146    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77521957
Number of Sequences: 2977
Number of extensions: 3201823
Number of successful extensions: 13176
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13165
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 189,106,746
effective HSP length: 52
effective length of query: 162
effective length of database: 157,985,422
effective search space: 25593638364
effective search space used: 25593638364
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)