BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0935 1364517 1364918 134 !not a gene!
         (134 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71171 hypothetical protein PH0571 - Pyrococcus horikoshii ...   129  2e-29

>pir||G71171 hypothetical protein PH0571 - Pyrococcus horikoshii
           >gi|3256977|dbj|BAA29660.1| (AP000002) 181aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 181
           
 Score =  129 bits (320), Expect = 2e-29
 Identities = 74/100 (74%), Positives = 83/100 (83%)

Query: 35  MYFMFRVQSASIMLLAIASFIVPLVPSSTSSLSLDIPKLSLYSSVTLAIFAIILTASIGN 94
           M F+  VQ AS++LL IASFIVPL   S +S  L IPKLSLYSSVT AI AII TASIGN
Sbjct: 1   MNFIPIVQMASMILLVIASFIVPLFVPSRNSRILVIPKLSLYSSVTFAILAIISTASIGN 60

Query: 95  FPIAVSSESMTASVPSSIALATSVTSALVGTFSAVIETNI 134
           FP AVSS+++TASVPSSIALATSVTSALVGTFS V+ET+I
Sbjct: 61  FPTAVSSDNITASVPSSIALATSVTSALVGTFSIVMETSI 100


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.132    0.343 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34906504
Number of Sequences: 2977
Number of extensions: 1012009
Number of successful extensions: 4466
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4465
Number of HSP's gapped (non-prelim): 1
length of query: 134
length of database: 189,106,746
effective HSP length: 61
effective length of query: 73
effective length of database: 152,599,039
effective search space: 11139729847
effective search space used: 11139729847
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)