BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0938 (PAB0938) DE:Hypothetical protein
(480 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75053 hypothetical protein PAB0938 - Pyrococcus abyssi (st... 980 0.0
pir||F71172 hypothetical protein PH0578 - Pyrococcus horikoshii ... 877 0.0
pir||E72499 hypothetical protein APE1971 - Aeropyrum pernix (str... 545 e-154
pir||S76942 hypothetical protein - Synechocystis sp. (strain PCC... 529 e-149
>pir||D75053 hypothetical protein PAB0938 - Pyrococcus abyssi (strain Orsay)
>gi|5458834|emb|CAB50321.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 480
Score = 980 bits (2505), Expect = 0.0
Identities = 480/480 (100%), Positives = 480/480 (100%)
Query: 1 MKDFRARISLLNENCYKRKYRKLSRQKTEVIRMAEKKRKRVVILGAAGRDFHNFNVFFRD 60
MKDFRARISLLNENCYKRKYRKLSRQKTEVIRMAEKKRKRVVILGAAGRDFHNFNVFFRD
Sbjct: 1 MKDFRARISLLNENCYKRKYRKLSRQKTEVIRMAEKKRKRVVILGAAGRDFHNFNVFFRD 60
Query: 61 NPEYEVVAFTATQIPDIEGRVYPPELAGELYPNGIPILPEDDLEKIIKEKDVDIVVFAYS 120
NPEYEVVAFTATQIPDIEGRVYPPELAGELYPNGIPILPEDDLEKIIKEKDVDIVVFAYS
Sbjct: 61 NPEYEVVAFTATQIPDIEGRVYPPELAGELYPNGIPILPEDDLEKIIKEKDVDIVVFAYS 120
Query: 121 DVSHEHVMHLASRAHSAGADFWLLGPKSTMLKSKKPVVAVTAVRTGCGKSQTSRKVAQLL 180
DVSHEHVMHLASRAHSAGADFWLLGPKSTMLKSKKPVVAVTAVRTGCGKSQTSRKVAQLL
Sbjct: 121 DVSHEHVMHLASRAHSAGADFWLLGPKSTMLKSKKPVVAVTAVRTGCGKSQTSRKVAQLL 180
Query: 181 QEMGFKVVAVRHPMPYGDLRKQVVQRFATFEDLDKHECTIEEREEYEPYLERGMVVYAGV 240
QEMGFKVVAVRHPMPYGDLRKQVVQRFATFEDLDKHECTIEEREEYEPYLERGMVVYAGV
Sbjct: 181 QEMGFKVVAVRHPMPYGDLRKQVVQRFATFEDLDKHECTIEEREEYEPYLERGMVVYAGV 240
Query: 241 DYEKILREAEKEADIILWDGGNNDFPFFEPDLWIVVTDPHRPGHELTHHPGETNFRSADV 300
DYEKILREAEKEADIILWDGGNNDFPFFEPDLWIVVTDPHRPGHELTHHPGETNFRSADV
Sbjct: 241 DYEKILREAEKEADIILWDGGNNDFPFFEPDLWIVVTDPHRPGHELTHHPGETNFRSADV 300
Query: 301 IIINKVDTASMDAVQKIRENIEKINPKATVIEAASPIFVDKPELIKGKRVLVVEDGPTLT 360
IIINKVDTASMDAVQKIRENIEKINPKATVIEAASPIFVDKPELIKGKRVLVVEDGPTLT
Sbjct: 301 IIINKVDTASMDAVQKIRENIEKINPKATVIEAASPIFVDKPELIKGKRVLVVEDGPTLT 360
Query: 361 HGGMSYGAGYIAAKKFGAKEIVDPRPYAVGSIIETYKKYPHLSNILPAMGYGKKQIKELE 420
HGGMSYGAGYIAAKKFGAKEIVDPRPYAVGSIIETYKKYPHLSNILPAMGYGKKQIKELE
Sbjct: 361 HGGMSYGAGYIAAKKFGAKEIVDPRPYAVGSIIETYKKYPHLSNILPAMGYGKKQIKELE 420
Query: 421 ETINRADADVVIMGTPVDLRRFMNLNKPAVRVKYELEEIGYPKLKDVLEEWVKNCKKLKK 480
ETINRADADVVIMGTPVDLRRFMNLNKPAVRVKYELEEIGYPKLKDVLEEWVKNCKKLKK
Sbjct: 421 ETINRADADVVIMGTPVDLRRFMNLNKPAVRVKYELEEIGYPKLKDVLEEWVKNCKKLKK 480
>pir||F71172 hypothetical protein PH0578 - Pyrococcus horikoshii
>gi|3256984|dbj|BAA29667.1| (AP000002) 457aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 457
Score = 877 bits (2242), Expect = 0.0
Identities = 420/450 (93%), Positives = 441/450 (97%)
Query: 31 IRMAEKKRKRVVILGAAGRDFHNFNVFFRDNPEYEVVAFTATQIPDIEGRVYPPELAGEL 90
I+MAEK+RKRVVILGAAGRDFHNFNVFFR+NPEYEVVAFTATQIPDIEGR+YPPELAGEL
Sbjct: 8 IKMAEKRRKRVVILGAAGRDFHNFNVFFRNNPEYEVVAFTATQIPDIEGRIYPPELAGEL 67
Query: 91 YPNGIPILPEDDLEKIIKEKDVDIVVFAYSDVSHEHVMHLASRAHSAGADFWLLGPKSTM 150
YPNGIPILPEDDLEKIIKEKDVDIVVFAYSDVSHEHVMHLASRAHSAGADFWLLGPKSTM
Sbjct: 68 YPNGIPILPEDDLEKIIKEKDVDIVVFAYSDVSHEHVMHLASRAHSAGADFWLLGPKSTM 127
Query: 151 LKSKKPVVAVTAVRTGCGKSQTSRKVAQLLQEMGFKVVAVRHPMPYGDLRKQVVQRFATF 210
++SKKPVVAVTAVRTGCGKSQTSRKVAQLLQEMG+KV +RHPMPYGDLRKQ+VQRFA+F
Sbjct: 128 IESKKPVVAVTAVRTGCGKSQTSRKVAQLLQEMGYKVAVIRHPMPYGDLRKQIVQRFASF 187
Query: 211 EDLDKHECTIEEREEYEPYLERGMVVYAGVDYEKILREAEKEADIILWDGGNNDFPFFEP 270
EDLD++ECTIEEREEYEPY+ERGMVVYAGVDYEKILREAEKEADIILWDGGNNDFPF++P
Sbjct: 188 EDLDRYECTIEEREEYEPYIERGMVVYAGVDYEKILREAEKEADIILWDGGNNDFPFYKP 247
Query: 271 DLWIVVTDPHRPGHELTHHPGETNFRSADVIIINKVDTASMDAVQKIRENIEKINPKATV 330
DLWIVVTDPHRPGHELTHHPGETNFRSADVIIINK+DTA + VQKIRENIEK+NP A V
Sbjct: 248 DLWIVVTDPHRPGHELTHHPGETNFRSADVIIINKIDTAYPENVQKIRENIEKVNPNAIV 307
Query: 331 IEAASPIFVDKPELIKGKRVLVVEDGPTLTHGGMSYGAGYIAAKKFGAKEIVDPRPYAVG 390
IEAASPIFVDKPELIKGKRVLV+EDGPTLTHGGMSYGAGYIAAKKFGAKEIVDPRPYAVG
Sbjct: 308 IEAASPIFVDKPELIKGKRVLVIEDGPTLTHGGMSYGAGYIAAKKFGAKEIVDPRPYAVG 367
Query: 391 SIIETYKKYPHLSNILPAMGYGKKQIKELEETINRADADVVIMGTPVDLRRFMNLNKPAV 450
SIIETYKKYPHLSNILPAMGYGKKQIKELEETINRADADVVIMGTPVDLRRFMNLNKPAV
Sbjct: 368 SIIETYKKYPHLSNILPAMGYGKKQIKELEETINRADADVVIMGTPVDLRRFMNLNKPAV 427
Query: 451 RVKYELEEIGYPKLKDVLEEWVKNCKKLKK 480
RVKYELEEIG PKLKD+LEEWVK C+KLKK
Sbjct: 428 RVKYELEEIGQPKLKDILEEWVKKCEKLKK 457
>pir||E72499 hypothetical protein APE1971 - Aeropyrum pernix (strain K1)
>gi|5105669|dbj|BAA80981.1| (AP000063) 453aa long
hypothetical protein [Aeropyrum pernix]
Length = 453
Score = 545 bits (1388), Expect = e-154
Identities = 256/439 (58%), Positives = 331/439 (75%), Gaps = 1/439 (0%)
Query: 39 KRVVILGAAGRDFHNFNVFFRDNPEYEVVAFTATQIPDIEGRVYPPELAGELYPNGIPIL 98
KRV+ILGA GRDFHNFNV FRDNP Y VVAFTA QIP + GR YPPELAG LYP+GIPIL
Sbjct: 9 KRVLILGAGGRDFHNFNVVFRDNPSYRVVAFTAAQIPGVAGRRYPPELAGSLYPSGIPIL 68
Query: 99 PEDDLEKIIKEKDVDIVVFAYSDVSHEHVMHLASRAHSAGADFWLLGPKSTMLKSKKPVV 158
PE+DLEKII+++ VD+ V AYSD+S+E V + SR SAGA F ++GP+ TML + KPV+
Sbjct: 69 PEEDLEKIIRDQAVDLAVLAYSDLSYEDVGRIVSRVLSAGASFKIIGPRETMLLTSKPVI 128
Query: 159 AVTAVRTGCGKSQTSRKVAQLLQEMGFKVVAVRHPMPYGDLRKQV-VQRFATFEDLDKHE 217
AVTAVRTG GKS SR +A++++ G++VV VRHPM Y + + VQRF + EDLD++
Sbjct: 129 AVTAVRTGAGKSTVSRAIARIMRGKGYRVVPVRHPMVYVAITPDIAVQRFESLEDLDRYG 188
Query: 218 CTIEEREEYEPYLERGMVVYAGVDYEKILREAEKEADIILWDGGNNDFPFFEPDLWIVVT 277
T+EEREEYE Y++ G VYAGVDY +LRE EKE+DIILWDGGNND PFF+PD I V
Sbjct: 189 VTVEEREEYEAYIKMGFTVYAGVDYGAVLREVEKESDIILWDGGNNDLPFFKPDFMITVA 248
Query: 278 DPHRPGHELTHHPGETNFRSADVIIINKVDTASMDAVQKIRENIEKINPKATVIEAASPI 337
D RPG E+ PGE N R AD +IINKVD A + V++I EN+ INPKA + EA S +
Sbjct: 249 DALRPGQEVGSFPGEVNVRLADAVIINKVDRAPEENVRRIEENVRSINPKALISEAVSDV 308
Query: 338 FVDKPELIKGKRVLVVEDGPTLTHGGMSYGAGYIAAKKFGAKEIVDPRPYAVGSIIETYK 397
VD PE+I GKRV+VVED PT+THGG YGAGY+AA+K+ A EIVDPRPYA G I E Y+
Sbjct: 309 EVDNPEMISGKRVVVVEDSPTVTHGGAPYGAGYVAAEKYSAAEIVDPRPYAKGVIAEMYR 368
Query: 398 KYPHLSNILPAMGYGKKQIKELEETINRADADVVIMGTPVDLRRFMNLNKPAVRVKYELE 457
+YPH+ ++P+ GY Q+++LEET+N ADV++ GTP+DL R +NLNKP V+ ++E++
Sbjct: 369 EYPHMGPVVPSTGYTPSQLRDLEETLNSVPADVIVSGTPIDLERLLNLNKPVVKARFEVK 428
Query: 458 EIGYPKLKDVLEEWVKNCK 476
+ P L+++++ ++ K
Sbjct: 429 IVKGPTLEELVDMFLDRVK 447
>pir||S76942 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653944|dbj|BAA18854.1| (D90917) hypothetical
protein [Synechocystis sp.]
Length = 470
Score = 529 bits (1349), Expect = e-149
Identities = 258/445 (57%), Positives = 323/445 (71%)
Query: 25 RQKTEVIRMAEKKRKRVVILGAAGRDFHNFNVFFRDNPEYEVVAFTATQIPDIEGRVYPP 84
R+ V R+RVVILGAAGRDFHNFN +RDNP YEV+AFTATQI I R YPP
Sbjct: 10 REGVMVTNRITDNRRRVVILGAAGRDFHNFNQVYRDNPRYEVMAFTATQIVGIADRRYPP 69
Query: 85 ELAGELYPNGIPILPEDDLEKIIKEKDVDIVVFAYSDVSHEHVMHLASRAHSAGADFWLL 144
LAGELYP+GIPIL E LE +E VD +VFAYSDVSH VMHLASR+ + GADF LL
Sbjct: 70 SLAGELYPHGIPILEEGQLENFCREHRVDQIVFAYSDVSHHQVMHLASRSLAIGADFVLL 129
Query: 145 GPKSTMLKSKKPVVAVTAVRTGCGKSQTSRKVAQLLQEMGFKVVAVRHPMPYGDLRKQVV 204
GP TM+K+ PV+AV+AVRTGCGKSQ SR ++Q L+++G +V A+RHPMPYG+L+KQ V
Sbjct: 130 GPNQTMIKTTVPVIAVSAVRTGCGKSQVSRWLSQRLRQLGLRVCAIRHPMPYGNLQKQAV 189
Query: 205 QRFATFEDLDKHECTIEEREEYEPYLERGMVVYAGVDYEKILREAEKEADIILWDGGNND 264
QRFA EDLD+ +CT+EEREEYEP++ G VVYAGVDY I+ +A E+D+ILWDGGNND
Sbjct: 190 QRFAKLEDLDQADCTVEEREEYEPHILAGHVVYAGVDYGLIVEKASLESDVILWDGGNND 249
Query: 265 FPFFEPDLWIVVTDPHRPGHELTHHPGETNFRSADVIIINKVDTASMDAVQKIRENIEKI 324
FPF +PDL IV+ DP RPG E +HPGE R AD+++I K D A++ + ++ +I ++
Sbjct: 250 FPFVQPDLHIVLVDPLRPGDESLYHPGEAVLRMADIVLIPKTDVATVAQITQVLSSIAQL 309
Query: 325 NPKATVIEAASPIFVDKPELIKGKRVLVVEDGPTLTHGGMSYGAGYIAAKKFGAKEIVDP 384
NP A +I+ SP+ ++ P ++GKRV+VVEDGPT THGGM YGAGY A K+ IVDP
Sbjct: 310 NPDAQIIQGRSPLRLEPPLDLRGKRVIVVEDGPTTTHGGMDYGAGYQAVKEIENITIVDP 369
Query: 385 RPYAVGSIIETYKKYPHLSNILPAMGYGKKQIKELEETINRADADVVIMGTPVDLRRFMN 444
RPY V I Y K+PHL+ ILPAMGY Q++ L +T+N A+ DVV+ GTP DL R +
Sbjct: 370 RPYTVPEIAAVYAKFPHLTKILPAMGYFPAQLQALADTLNAAEVDVVVSGTPSDLGRLIP 429
Query: 445 LNKPAVRVKYELEEIGYPKLKDVLE 469
LNKP VRV Y+ E P L L+
Sbjct: 430 LNKPLVRVFYDYAEAKEPGLGKALD 454
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189192018
Number of Sequences: 2977
Number of extensions: 8420153
Number of successful extensions: 23135
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23130
Number of HSP's gapped (non-prelim): 4
length of query: 480
length of database: 189,106,746
effective HSP length: 56
effective length of query: 424
effective length of database: 155,591,474
effective search space: 65970784976
effective search space used: 65970784976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)