BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0939 (PAB0939) DE:Hypothetical protein
         (202 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75053 hypothetical protein PAB0939 - Pyrococcus abyssi (st...   414  e-115
pir||G71172 hypothetical protein PH0579 - Pyrococcus horikoshii ...   325  2e-88

>pir||E75053 hypothetical protein PAB0939 - Pyrococcus abyssi (strain Orsay)
           >gi|5458835|emb|CAB50322.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 202
           
 Score =  414 bits (1054), Expect = e-115
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MVKLIILAPCLLSPFYVYRGPKEKEYKTALEIRKVLFSLPKDWQIFAYPCPEFELLRWPR 60
           MVKLIILAPCLLSPFYVYRGPKEKEYKTALEIRKVLFSLPKDWQIFAYPCPEFELLRWPR
Sbjct: 1   MVKLIILAPCLLSPFYVYRGPKEKEYKTALEIRKVLFSLPKDWQIFAYPCPEFELLRWPR 60

Query: 61  PPMSREVFERFGIRKVVEEVADFIGRVIVEERPEAIVFVGVKGSPTCGVYTTTSSDPDLY 120
           PPMSREVFERFGIRKVVEEVADFIGRVIVEERPEAIVFVGVKGSPTCGVYTTTSSDPDLY
Sbjct: 61  PPMSREVFERFGIRKVVEEVADFIGRVIVEERPEAIVFVGVKGSPTCGVYTTTSSDPDLY 120

Query: 121 PVQKVREFFYMRKDERLAKYKDIIEEGKLTLIEGPGALFDELMKRFSELDNTFWVEIDKD 180
           PVQKVREFFYMRKDERLAKYKDIIEEGKLTLIEGPGALFDELMKRFSELDNTFWVEIDKD
Sbjct: 121 PVQKVREFFYMRKDERLAKYKDIIEEGKLTLIEGPGALFDELMKRFSELDNTFWVEIDKD 180

Query: 181 NVNSGIEILKTILKKIKELTKD 202
           NVNSGIEILKTILKKIKELTKD
Sbjct: 181 NVNSGIEILKTILKKIKELTKD 202


>pir||G71172 hypothetical protein PH0579 - Pyrococcus horikoshii
           >gi|3256985|dbj|BAA29668.1| (AP000002) 204aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 204
           
 Score =  325 bits (825), Expect = 2e-88
 Identities = 143/202 (70%), Positives = 183/202 (89%)

Query: 1   MVKLIILAPCLLSPFYVYRGPKEKEYKTALEIRKVLFSLPKDWQIFAYPCPEFELLRWPR 60
           ++KLI++APCLL+PFYVYRGPK+KEY+TA+E+RK++ SLP+DW I AYPCPEFELL+WPR
Sbjct: 3   VMKLIVVAPCLLTPFYVYRGPKDKEYRTAIEVRKLISSLPEDWHILAYPCPEFELLKWPR 62

Query: 61  PPMSREVFERFGIRKVVEEVADFIGRVIVEERPEAIVFVGVKGSPTCGVYTTTSSDPDLY 120
           PPMSREVFE+ GI++V++++ADFIGRVI EE+P+AI+FVGVKGSPTCGVYTTTSSDPD Y
Sbjct: 63  PPMSREVFEKLGIKRVIQDIADFIGRVITEEKPDAIIFVGVKGSPTCGVYTTTSSDPDNY 122

Query: 121 PVQKVREFFYMRKDERLAKYKDIIEEGKLTLIEGPGALFDELMKRFSELDNTFWVEIDKD 180
           P+ K++EFFYM+K+ER+++YKDII+   L L++G GALF ELMKRF EL NTFWVEIDKD
Sbjct: 123 PLTKIQEFFYMKKNERISRYKDIIKVAGLNLVKGSGALFGELMKRFGELSNTFWVEIDKD 182

Query: 181 NVNSGIEILKTILKKIKELTKD 202
           NVN GIE +KTI++KI++  K+
Sbjct: 183 NVNPGIENIKTIIEKIEKQPKN 204


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.428 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79186957
Number of Sequences: 2977
Number of extensions: 3417587
Number of successful extensions: 12202
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12200
Number of HSP's gapped (non-prelim): 2
length of query: 202
length of database: 189,106,746
effective HSP length: 51
effective length of query: 151
effective length of database: 158,583,909
effective search space: 23946170259
effective search space used: 23946170259
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)