BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0940 (PAB0940) DE:Hypothetical protein
         (430 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75053 hypothetical protein PAB0940 - Pyrococcus abyssi (st...   825  0.0
pir||H71172 hypothetical protein PH0580 - Pyrococcus horikoshii ...   587  e-167

>pir||F75053 hypothetical protein PAB0940 - Pyrococcus abyssi (strain Orsay)
           >gi|5458836|emb|CAB50323.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 430
           
 Score =  825 bits (2108), Expect = 0.0
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   MVIDEVLSSVSSIPDPYIRVLTYGRIGVILARAKDPRHEKAFKLALSELTRIEDPYTLVR 60
           MVIDEVLSSVSSIPDPYIRVLTYGRIGVILARAKDPRHEKAFKLALSELTRIEDPYTLVR
Sbjct: 1   MVIDEVLSSVSSIPDPYIRVLTYGRIGVILARAKDPRHEKAFKLALSELTRIEDPYTLVR 60

Query: 61  ALLVTGYLTGLAGLKSAKRAFREAIEYSNMLPRELRDKIKAEAVDYLLSLNNPEEALFYA 120
           ALLVTGYLTGLAGLKSAKRAFREAIEYSNMLPRELRDKIKAEAVDYLLSLNNPEEALFYA
Sbjct: 61  ALLVTGYLTGLAGLKSAKRAFREAIEYSNMLPRELRDKIKAEAVDYLLSLNNPEEALFYA 120

Query: 121 SQIENKKLRNAKLLEILSKTLEVLDSKEINVVYKRRKIELILEHIKDEPYRSEAIVRVIR 180
           SQIENKKLRNAKLLEILSKTLEVLDSKEINVVYKRRKIELILEHIKDEPYRSEAIVRVIR
Sbjct: 121 SQIENKKLRNAKLLEILSKTLEVLDSKEINVVYKRRKIELILEHIKDEPYRSEAIVRVIR 180

Query: 181 PLLSGGYYKRVIELIGEIKSKPWIKQALSEVLLFLRTGEGEGIEEIIELSKSLAKKSGRD 240
           PLLSGGYYKRVIELIGEIKSKPWIKQALSEVLLFLRTGEGEGIEEIIELSKSLAKKSGRD
Sbjct: 181 PLLSGGYYKRVIELIGEIKSKPWIKQALSEVLLFLRTGEGEGIEEIIELSKSLAKKSGRD 240

Query: 241 IREDLAYIFAIHGFTKQSIDVLLDLPNRGKIAGEIFDSLLMRGTKALEDFVNFLPDDIIK 300
           IREDLAYIFAIHGFTKQSIDVLLDLPNRGKIAGEIFDSLLMRGTKALEDFVNFLPDDIIK
Sbjct: 241 IREDLAYIFAIHGFTKQSIDVLLDLPNRGKIAGEIFDSLLMRGTKALEDFVNFLPDDIIK 300

Query: 301 EMKGKLMSIMNEENPEFSSIVKVIVERTSDESILVGAVKYFLTINKLEYAVSIIKRLKTE 360
           EMKGKLMSIMNEENPEFSSIVKVIVERTSDESILVGAVKYFLTINKLEYAVSIIKRLKTE
Sbjct: 301 EMKGKLMSIMNEENPEFSSIVKVIVERTSDESILVGAVKYFLTINKLEYAVSIIKRLKTE 360

Query: 361 KARSTALGFLAYYLIKRGKIGEAVDVVLEIRDRNLASKLASEILVKAVEGEVYERLPNEK 420
           KARSTALGFLAYYLIKRGKIGEAVDVVLEIRDRNLASKLASEILVKAVEGEVYERLPNEK
Sbjct: 361 KARSTALGFLAYYLIKRGKIGEAVDVVLEIRDRNLASKLASEILVKAVEGEVYERLPNEK 420

Query: 421 ERERNYQLPS 430
           ERERNYQLPS
Sbjct: 421 ERERNYQLPS 430


>pir||H71172 hypothetical protein PH0580 - Pyrococcus horikoshii
           >gi|3256986|dbj|BAA29669.1| (AP000002) 431aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 431
           
 Score =  587 bits (1497), Expect = e-167
 Identities = 294/428 (68%), Positives = 364/428 (84%), Gaps = 1/428 (0%)

Query: 1   MVIDEVLSSVSSIPDPYIRVLTYGRIGVILARAKDPRHEKAFKLALSELTRIEDPYTLVR 60
           M+IDEVL+SVSSIPDPYIRV+TYGRIGV LAR  DPR+EKAFKLALSELTRIEDPYTL+R
Sbjct: 1   MIIDEVLASVSSIPDPYIRVITYGRIGVTLARVNDPRYEKAFKLALSELTRIEDPYTLIR 60

Query: 61  ALLVTGYLTGLAGLKSAKRAFREAIEYSNMLPRELRDKIKAEAVDYLLSLNNPEEALFYA 120
           AL+  GYL+GL GLKSA++AFREAI YS +LP+ELRD+I  EAVDYLLSL N E+ALFYA
Sbjct: 61  ALIYIGYLSGLTGLKSARKAFREAISYSEVLPKELRDQIIGEAVDYLLSLGNLEDALFYA 120

Query: 121 SQIENKKLRNAKLLEILSKTLEVLDSKEINVVYKRRKIELILEHIKDEPYRSEAIVRVIR 180
            +I  KKLRN KLLEILS+TLE L+ K+IN +YKRRKIELILEHI+DEPYRSEAIV+VIR
Sbjct: 121 VEISEKKLRNTKLLEILSRTLEELEKKDINPIYKRRKIELILEHIEDEPYRSEAIVKVIR 180

Query: 181 PLLSGGYYKRVIELIGEIKSKPWIKQALSEVLLFLRTGEGEGIEEIIELSKSLAKKSGRD 240
           PLL  G Y+R IELI +IKSK W+KQAL+E+LLFLR+G+GEG+E IIELS+ LAK+SGRD
Sbjct: 181 PLLLLGSYERTIELIRDIKSKHWLKQALNELLLFLRSGKGEGVEGIIELSRDLAKRSGRD 240

Query: 241 IREDLAYIFAIHGFTKQSIDVLLDLPNRGKIAGEIFDSLLMRGTKALEDFVNFLPDDIIK 300
           I+EDLAYIFAIHGF  QS+++L  LPNR  IA EIFD+L ++  K L+ F+  LP +I+ 
Sbjct: 241 IKEDLAYIFAIHGFINQSVEILESLPNREDIAREIFDNLALKDLKQLQAFIEALPPEIVD 300

Query: 301 EMKGKLMSIMNEENPEFSSIVKVIVERTSDESILVGAVKYFLTINKLEYAVSIIKRLKTE 360
           E++ K++ IM E +  FSSIVK I E+TS+E IL+GAVKYFL +++ E  V +++R++TE
Sbjct: 301 EIREKIIEIMEEGDERFSSIVKTITEKTSNEEILIGAVKYFLRLDEFEEVVPLLRRIRTE 360

Query: 361 KARSTALGFLAYYLIKRGKIGEAVDVVLEIRDRNLASKLASEILVKAVEGEVYERLPNE- 419
           K +S ALGF+AY+LI +G+IG+A+D+VLEI+DRNLASKLASEIL+KAVE E+YER+ NE 
Sbjct: 361 KGKSIALGFIAYHLINKGRIGDAIDIVLEIKDRNLASKLASEILIKAVEREIYERIANEK 420

Query: 420 KERERNYQ 427
           KER+RN Q
Sbjct: 421 KERKRNDQ 428


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.368 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137868138
Number of Sequences: 2977
Number of extensions: 5298674
Number of successful extensions: 16758
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16750
Number of HSP's gapped (non-prelim): 2
length of query: 430
length of database: 189,106,746
effective HSP length: 61
effective length of query: 369
effective length of database: 152,599,039
effective search space: 56309045391
effective search space used: 56309045391
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)