BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0941 (PAB0941) DE:Hypothetical protein
(133 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75053 hypothetical protein PAB0941 - Pyrococcus abyssi (st... 268 2e-71
pir||A71173 hypothetical protein PH0581 - Pyrococcus horikoshii ... 247 3e-65
gi|11499632 conserved hypothetical protein [Archaeoglobus fulgid... 149 1e-35
pir||C72200 conserved hypothetical protein - Thermotoga maritima... 138 3e-32
pir||A75043 hypothetical protein PAB0878 - Pyrococcus abyssi (st... 134 5e-31
sp|O26865|Y771_METTH HYPOTHETICAL PROTEIN MTH771 >gi|7444974|pir... 133 7e-31
pir||B71118 hypothetical protein PH0713 - Pyrococcus horikoshii ... 120 9e-27
sp|Q58481|YA81_METJA HYPOTHETICAL PROTEIN MJ1081 >gi|2128043|pir... 119 2e-26
gb|AAK42662.1| Conserved hypothetical protein [Sulfolobus solfat... 118 2e-26
pir||A72633 hypothetical protein APE1520 - Aeropyrum pernix (str... 111 3e-24
sp|O05243|YUGU_BACSU HYPOTHETICAL 16.3 KD PROTEIN IN TGL-PGI INT... 106 9e-23
pir||E70468 conserved hypothetical protein aq_1965 - Aquifex aeo... 105 3e-22
pir||H70472 conserved hypothetical protein aq_2013 - Aquifex aeo... 101 5e-21
gi|11498347 conserved hypothetical protein [Archaeoglobus fulgid... 98 3e-20
dbj|BAB07217.1| (AP001519) unknown conserved protein [Bacillus h... 94 5e-19
sp|O14155|YE72_SCHPO HYPOTHETICAL 15.9 KD PROTEIN C4A8.02C IN CH... 86 1e-16
pir||A72342 conserved hypothetical protein - Thermotoga maritima... 85 3e-16
pir||A82330 conserved hypothetical protein VC0373 [imported] - V... 73 2e-12
gb|AAF78797.1| (U33883) unknown [Bradyrhizobium japonicum] 72 3e-12
gb|AAF80655.1|AC012190_11 (AC012190) It is a member of an Unchar... 69 2e-11
sp|Q50742|YP56_MYCTU HYPOTHETICAL 13.9 KDA PROTEIN RV2556C >gi|7... 69 2e-11
pir||C75256 conserved hypothetical protein - Deinococcus radiodu... 69 2e-11
sp|P74125|YI80_SYNY3 HYPOTHETICAL 16.4 KD PROTEIN SLL1880 >gi|74... 69 3e-11
pir||B82985 conserved hypothetical protein PA5286 [imported] - P... 67 8e-11
>pir||G75053 hypothetical protein PAB0941 - Pyrococcus abyssi (strain Orsay)
>gi|5458837|emb|CAB50324.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 133
Score = 268 bits (678), Expect = 2e-71
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MLRSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDL 60
MLRSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDL
Sbjct: 1 MLRSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDL 60
Query: 61 EELLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDG 120
EELLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDG
Sbjct: 61 EELLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDG 120
Query: 121 PRTREVYVKVCEC 133
PRTREVYVKVCEC
Sbjct: 121 PRTREVYVKVCEC 133
>pir||A71173 hypothetical protein PH0581 - Pyrococcus horikoshii
>gi|3256987|dbj|BAA29670.1| (AP000002) 133aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 133
Score = 247 bits (625), Expect = 3e-65
Identities = 116/133 (87%), Positives = 128/133 (96%)
Query: 1 MLRSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDL 60
M++SI +RTS+EFEI+DIT EVE++VRESNVKSG+VVVFTRHTTTALTINENESGLKRD+
Sbjct: 1 MIKSITIRTSREFEIIDITKEVERVVRESNVKSGIVVVFTRHTTTALTINENESGLKRDI 60
Query: 61 EELLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDG 120
EE+L KLVPKGM Y HDRIDNNAHSHLRGIL+GPSLTIPVEDGRLLLGTWQSILF+ELDG
Sbjct: 61 EEILSKLVPKGMNYFHDRIDNNAHSHLRGILLGPSLTIPVEDGRLLLGTWQSILFVELDG 120
Query: 121 PRTREVYVKVCEC 133
PRTREVYVKVCEC
Sbjct: 121 PRTREVYVKVCEC 133
>gi|11499632 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3123134|sp|O28229|YK50_ARCFU HYPOTHETICAL PROTEIN
AF2050 >gi|7444975|pir||A69506 conserved hypothetical
protein AF2050 - Archaeoglobus fulgidus
>gi|2648491|gb|AAB89204.1| (AE000961) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 126
Score = 149 bits (372), Expect = 1e-35
Identities = 71/125 (56%), Positives = 92/125 (72%), Gaps = 3/125 (2%)
Query: 5 IKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEELL 64
+ ++T+K EI+DITD+VE+ V + GLV+V+T HTTTAL INE E GL D+ E +
Sbjct: 3 LTLKTAKRVEIIDITDQVERCVES---RDGLVLVYTPHTTTALVINEGERGLLEDILEFM 59
Query: 65 GKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDGPRTR 124
KLVP G GY HDR+D+NA +HL+ L+G S+ +PVE G+L LGTWQ ILF+E DGPRTR
Sbjct: 60 EKLVPYGKGYKHDRLDSNADAHLKATLLGNSVVVPVESGKLALGTWQRILFLEFDGPRTR 119
Query: 125 EVYVK 129
V VK
Sbjct: 120 RVIVK 124
>pir||C72200 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982458|gb|AAD36934.1|AE001824_3 (AE001824)
conserved hypothetical protein [Thermotoga maritima]
Length = 132
Score = 138 bits (344), Expect = 3e-32
Identities = 67/133 (50%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 1 MLRSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINEN-ESGLKRD 59
ML+ + VRTS + VDIT E+ K + ES V++G+ VVF HTT +TINEN + +++D
Sbjct: 1 MLKRLTVRTSSRTQFVDITSEIVKFIEESKVRNGICVVFVPHTTAGITINENADPSVRQD 60
Query: 60 LEELLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELD 119
+ L KLVP GY H ++ NA SH++ L+G S+T+ +E+GR LLGTWQ I F E D
Sbjct: 61 IMNTLNKLVPPSAGYTH--LEGNADSHIKASLVGSSVTLIIENGRPLLGTWQGIYFCEFD 118
Query: 120 GPRTREVYVKVCE 132
GPRTR VYVK+ E
Sbjct: 119 GPRTRSVYVKIVE 131
>pir||A75043 hypothetical protein PAB0878 - Pyrococcus abyssi (strain Orsay)
>gi|5458751|emb|CAB50238.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 137
Score = 134 bits (333), Expect = 5e-31
Identities = 63/129 (48%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Query: 3 RSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEE 62
+ ++ T E ++VDIT EVEK V ESNVK+G+V+VF T A+ E+E GL D +
Sbjct: 6 KELRFSTKGEIDLVDITREVEKFVEESNVKNGIVLVFVPGATGAIVAIEHEEGLLEDFKR 65
Query: 63 LLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELD-GP 121
L +++P+ Y+H+R D+NAHSHLR L+GPSL P+ DGRL+ GTWQ I F+ELD P
Sbjct: 66 FLREVIPRERSYLHNRFDDNAHSHLRATLLGPSLAFPIIDGRLVRGTWQQIFFVELDTRP 125
Query: 122 RTREVYVKV 130
R+R V +++
Sbjct: 126 RSRRVILQI 134
>sp|O26865|Y771_METTH HYPOTHETICAL PROTEIN MTH771 >gi|7444974|pir||B69203 conserved
hypothetical protein MTH771 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621861|gb|AAB85274.1| (AE000855) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 143
Score = 133 bits (332), Expect = 7e-31
Identities = 63/128 (49%), Positives = 89/128 (69%)
Query: 3 RSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEE 62
+ + +RTS+ E++DIT V ++ S +++G++ VF+RH+T+A+ INENES L D+E
Sbjct: 12 QELPLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINENESRLLSDIES 71
Query: 63 LLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDGPR 122
+L VP Y H+ IDNNA SHLR +L+G S T+PV +G + LGTWQSI F ELDGPR
Sbjct: 72 MLEGTVPVDASYGHNAIDNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSIFFAELDGPR 131
Query: 123 TREVYVKV 130
R + V V
Sbjct: 132 NRRIRVSV 139
>pir||B71118 hypothetical protein PH0713 - Pyrococcus horikoshii
>gi|3257121|dbj|BAA29804.1| (AP000003) 157aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 157
Score = 120 bits (297), Expect = 9e-27
Identities = 57/128 (44%), Positives = 82/128 (63%), Gaps = 1/128 (0%)
Query: 3 RSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEE 62
+ + T E ++VDIT EVE V ES + G V++F T A+ E+E GL D ++
Sbjct: 26 KELHFSTKGEIDLVDITREVELFVAESGISKGQVLIFVPGATGAVVAIEHEEGLLEDFKK 85
Query: 63 LLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELD-GP 121
+L ++VPK Y+H+R D+NAHSH+R L+GPSL P+ DG L+ GTWQ I F+ELD P
Sbjct: 86 ILKEIVPKEKPYLHNRFDDNAHSHIRATLLGPSLVFPIVDGELVRGTWQQIFFVELDTRP 145
Query: 122 RTREVYVK 129
R R + ++
Sbjct: 146 RKRRILLQ 153
>sp|Q58481|YA81_METJA HYPOTHETICAL PROTEIN MJ1081 >gi|2128043|pir||H64434 hypothetical
protein homolog MJ1081 - Methanococcus jannaschii
>gi|1591729|gb|AAB99083.1| (U67551) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 138
Score = 119 bits (295), Expect = 2e-26
Identities = 57/131 (43%), Positives = 84/131 (63%), Gaps = 3/131 (2%)
Query: 1 MLRSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINEN-ESGLKRD 59
ML +++T+K E+VDIT + + ES VK G+ V++ HTT +TINEN + +K D
Sbjct: 6 MLFKYQIKTNKREELVDITPYIISAISESKVKDGIAVIYVPHTTAGITINENADPSVKHD 65
Query: 60 LEELLGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELD 119
+ L L+PK + H ++ N+ +H++ L+G S TI ++DG+ LLGTWQ I F E D
Sbjct: 66 IINFLSHLIPKNWNFTH--LEGNSDAHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEFD 123
Query: 120 GPRTREVYVKV 130
GPR RE YVK+
Sbjct: 124 GPRRREFYVKI 134
>gb|AAK42662.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 137
Score = 118 bits (294), Expect = 2e-26
Identities = 53/127 (41%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 5 IKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEELL 64
I V T+++FE+VDITD+VE+IV +S +K+G+ ++F H+T A+ NE+E GL D+ +
Sbjct: 8 IYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKI 67
Query: 65 GKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDGPRT- 123
+ + H+ ID+NAH+HL +G PV +G+L+ GTWQ+I +ELDGPR+
Sbjct: 68 KEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSE 127
Query: 124 REVYVKV 130
R + V++
Sbjct: 128 RHITVEI 134
>pir||A72633 hypothetical protein APE1520 - Aeropyrum pernix (strain K1)
>gi|5105205|dbj|BAA80519.1| (AP000061) 134aa long
hypothetical protein [Aeropyrum pernix]
Length = 134
Score = 111 bits (276), Expect = 3e-24
Identities = 54/123 (43%), Positives = 78/123 (62%)
Query: 4 SIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEEL 63
S V+T + +++D+T +VE+ + +GL+VV+ HTT A+ +NE E L D+ E
Sbjct: 5 SFTVKTERRLQVLDVTGKVEEWLSTVGGVNGLLVVYVPHTTAAVAVNEAEPRLMEDIVEF 64
Query: 64 LGKLVPKGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDGPRT 123
+ +L G + H+ +D NAH+HL +IG S IPV GRL LGTWQ ILF+E+DGPR
Sbjct: 65 IRELTKPGGPWKHNLVDVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDGPRE 124
Query: 124 REV 126
R V
Sbjct: 125 RTV 127
>sp|O05243|YUGU_BACSU HYPOTHETICAL 16.3 KD PROTEIN IN TGL-PGI INTERGENIC REGION
>gi|7444973|pir||A70012 conserved hypothetical protein
yugU - Bacillus subtilis >gi|1934798|emb|CAB07927.1|
(Z93935) unknown [Bacillus subtilis]
>gi|2635612|emb|CAB15106.1| (Z99119) similar to
hypothetical proteins [Bacillus subtilis]
>gi|2635624|emb|CAB15117.1| (Z99120) similar to
hypothetical proteins [Bacillus subtilis]
Length = 142
Score = 106 bits (263), Expect = 9e-23
Identities = 51/134 (38%), Positives = 87/134 (64%), Gaps = 8/134 (5%)
Query: 1 MLRSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINEN-ESGLKRD 59
ML++++++T+K E++DIT EVE ++E+ + SG +++ HTT +TINEN + +K+D
Sbjct: 11 MLKTLQIKTTKRDEMIDITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKD 70
Query: 60 LEELLGKLVPKGMGYMHD---RIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFI 116
+ ++ P + H+ ++ N +H++ +G S + VE+GRL+LGTWQ I F
Sbjct: 71 MLRRFDEVYP----WEHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFC 126
Query: 117 ELDGPRTREVYVKV 130
E DGPRTR Y+K+
Sbjct: 127 EFDGPRTRTCYIKM 140
>pir||E70468 conserved hypothetical protein aq_1965 - Aquifex aeolicus
>gi|2984214|gb|AAC07744.1| (AE000765) hypothetical
protein [Aquifex aeolicus]
Length = 134
Score = 105 bits (259), Expect = 3e-22
Identities = 55/132 (41%), Positives = 84/132 (62%), Gaps = 4/132 (3%)
Query: 1 MLRSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINEN-ESGLKRD 59
M ++VRT+K IV+IT +V+++V++S V+ G+ VV+T HTT + +NE + + RD
Sbjct: 1 MKEVLRVRTTKHTSIVNITQQVDQVVKKSGVREGICVVYTPHTTACVFVNEGADPDVVRD 60
Query: 60 LEELLGKLVP-KGMGYMHDRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIEL 118
+ L KL+P Y H ++ N+ +H+R +IG S IP+ DG L LGTW+SI +
Sbjct: 61 IVYSLEKLIPWNDPSYAH--MEGNSAAHIRSAIIGNSRVIPIIDGELALGTWESIFLADF 118
Query: 119 DGPRTREVYVKV 130
DGPR R+V V V
Sbjct: 119 DGPRERKVIVVV 130
>pir||H70472 conserved hypothetical protein aq_2013 - Aquifex aeolicus
>gi|2984260|gb|AAC07787.1| (AE000768) hypothetical
protein [Aquifex aeolicus]
Length = 137
Score = 101 bits (248), Expect = 5e-21
Identities = 50/123 (40%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 9 TSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEELLGKLV 68
T K E++ ITDEV+K V ES VK GL +V + H T+++ I ++E GL D+ E L KL
Sbjct: 12 TKKRRELIRITDEVKKAVEESEVKEGLCLVSSMHLTSSVIIQDDEEGLHEDIWEWLEKLA 71
Query: 69 PKGMGYMHDRI-DNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDGPRTREVY 127
P Y H R ++N +HL+ +L + +P+ +G+L LG WQ I + E DG R + V
Sbjct: 72 PYRPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFDGQRPKRVV 131
Query: 128 VKV 130
+K+
Sbjct: 132 IKI 134
>gi|11498347 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7444977|pir||E69342 conserved hypothetical protein
AF0741 - Archaeoglobus fulgidus
>gi|2649874|gb|AAB90501.1| (AE001054) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 123
Score = 98.3 bits (241), Expect = 3e-20
Identities = 49/112 (43%), Positives = 72/112 (63%), Gaps = 2/112 (1%)
Query: 15 IVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEELLGKLVPKGMGY 74
+ DIT EVEK V+ES+V+SG V+VF+ +T A+T E E GLK+DL ++ K+ P G Y
Sbjct: 1 MADITPEVEKFVKESSVESGAVLVFSVGSTGAVTTIEYEPGLKKDLPRIMEKIAPYGDSY 60
Query: 75 MHDRI--DNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDGPRTR 124
H + D+N H++ +IGPS+ IP + + +LGTWQ ++ I D R R
Sbjct: 61 EHHKTWGDDNGSGHVKASIIGPSVLIPFHNSKPILGTWQQVVIINFDTRRRR 112
>dbj|BAB07217.1| (AP001519) unknown conserved protein [Bacillus halodurans]
Length = 133
Score = 94.4 bits (231), Expect = 5e-19
Identities = 47/129 (36%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 2 LRSIKVRTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINEN-ESGLKRDL 60
+++ + T E+VDIT ++E +RE+ V +G+ +V + HTT +T+NEN + +KRD+
Sbjct: 1 MKTFHLTTQSRDEMVDITSQIETWIRETGVTNGVAIVSSLHTTAGITVNENADPDVKRDM 60
Query: 61 EELLGKLVPKGMGYMHDR-IDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELD 119
L ++ P + +DR ++ N +HL+ +G + T+ + +GRL+LGTWQ + F E D
Sbjct: 61 IMRLDEVYP--WHHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFD 118
Query: 120 GPRTREVYV 128
GPRT +V
Sbjct: 119 GPRTNRKFV 127
>sp|O14155|YE72_SCHPO HYPOTHETICAL 15.9 KD PROTEIN C4A8.02C IN CHROMOSOME I
>gi|7490733|pir||T38771 hypothetical protein - fission
yeast (Schizosaccharomyces pombe)
>gi|4490640|emb|CAB11472.1| (Z98762) hypothetical
protein [Schizosaccharomyces pombe]
Length = 142
Score = 86.2 bits (210), Expect = 1e-16
Identities = 47/112 (41%), Positives = 70/112 (61%), Gaps = 3/112 (2%)
Query: 8 RTSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINEN-ESGLKRDLEELLGK 66
R SK F I+ D V+K+ + SG V F +HT+ ALTINEN ++ + D+ ++L K
Sbjct: 12 RRSKGFYIIT-NDLVKKLPELKSFSSGTVNFFIQHTSAALTINENWDADTRADMNDILDK 70
Query: 67 LVPKGMGYMHDRID-NNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIE 117
+VP+ GY H ++ +H++ LIGPSLT+P+ +G+L LGTWQ I E
Sbjct: 71 IVPESAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLAE 122
>pir||A72342 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981248|gb|AAD35805.1|AE001743_7 (AE001743)
conserved hypothetical protein [Thermotoga maritima]
Length = 139
Score = 85.0 bits (207), Expect = 3e-16
Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 9 TSKEFEIVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEELLGKLV 68
T + E ++IT +E+ VRES +K GL++ H T ++ IN++E GL D E L KL
Sbjct: 12 TKRRREFINITPLLEECVRESGIKEGLLLCNAMHITASVFINDDEPGLHHDFEVWLEKLA 71
Query: 69 PKG--MGYMH-DRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDGPRTRE 125
P+ Y H D ++NA +HL+ ++G + I + D ++ LG W+ + + E DG R +
Sbjct: 72 PEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKR 131
Query: 126 VYVKV 130
V VK+
Sbjct: 132 VLVKI 136
>pir||A82330 conserved hypothetical protein VC0373 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654791|gb|AAF93546.1|
(AE004125) conserved hypothetical protein [Vibrio
cholerae]
Length = 139
Score = 72.6 bits (175), Expect = 2e-12
Identities = 38/100 (38%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 18 ITDEVEKIVRE-SNVKSGLVVVFTRHTTTALTINEN-ESGLKRDLEELLGKLVPKGMGYM 75
ITDE+E+ + + + GL+ +F +HT+ +LTINEN + +++D+E P+G Y
Sbjct: 19 ITDEIEQQLPQIKRLNVGLLHLFVQHTSASLTINENADPTVRQDMEAHFNHAAPEGAPYY 78
Query: 76 H--DRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSI 113
D D++ +H++ L+G S++IP++ GRL LGTWQ I
Sbjct: 79 RHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGI 118
>gb|AAF78797.1| (U33883) unknown [Bradyrhizobium japonicum]
Length = 157
Score = 71.8 bits (173), Expect = 3e-12
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 26 VRESNVKSGLVVVFTRHTTTALTINEN-ESGLKRDLEELLGKLVPKGMGYMHDRID-NNA 83
+ E+ + G V +F RHT+ +LTI EN + + DL L +L P+ G+ HD ++
Sbjct: 45 IAEARAREGAVTLFIRHTSASLTIQENADPSVLVDLTTALSRLAPENAGWTHDTEGPDDM 104
Query: 84 HSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIELDG-PRTREVYVK 129
H++ +L SL +PV +GRL LGTWQ+I IE P REV ++
Sbjct: 105 PGHIKTMLTQTSLQVPVLNGRLALGTWQAIYLIEHRARPHRREVVLQ 151
>gb|AAF80655.1|AC012190_11 (AC012190) It is a member of an Uncharacterised protein family
PF|01894. ESTs gb|T43915, gb|AA395185 and gb|AI997079
come from this gene. [Arabidopsis thaliana]
Length = 217
Score = 69.5 bits (167), Expect = 2e-11
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 18 ITDEVEKIVRE--SNVKSGLVVVFTRHTTTALTINEN-ESGLKRDLEELLGKLVPKGMG- 73
IT ++ K +RE S+ GL VF +HT+ +LTINEN + ++ D E L ++VP+G
Sbjct: 95 ITPKILKEIREDLSDFNCGLAHVFLQHTSASLTINENYDPDVQADTETFLNRIVPEGNSA 154
Query: 74 -YMHDRID-NNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIE-LDGPRTREVYV 128
+ H ++ +H++ + G LTIP+ G+L +GTWQ I E D P R V V
Sbjct: 155 PWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLSMGTWQGIWLCEHRDAPTARRVVV 212
>sp|Q50742|YP56_MYCTU HYPOTHETICAL 13.9 KDA PROTEIN RV2556C >gi|7444985|pir||H70727
hypothetical protein Rv2556c - Mycobacterium
tuberculosis (strain H37RV) >gi|1460084|emb|CAB01048.1|
(Z77250) hypothetical protein Rv2556c [Mycobacterium
tuberculosis]
Length = 129
Score = 69.1 bits (166), Expect = 2e-11
Identities = 42/111 (37%), Positives = 58/111 (51%), Gaps = 5/111 (4%)
Query: 15 IVDITDEVEKIVRESNVKSGLVVVFTRHTTTALTINENESGLKRDLEELLGKLVPKGMGY 74
IVD+TD V + GL VF H T + I E +G DL + L +L+P+ Y
Sbjct: 11 IVDLTDAVRAFCTAHD--DGLCNVFVPHATAGVAIIETGAGSDEDLVDTLVRLLPRDDRY 68
Query: 75 MHDRID-NNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIEL--DGPR 122
H + HL + PS+T+PV G+ LLGTWQSI+ ++L D PR
Sbjct: 69 RHAHGSYGHGADHLLPAFVAPSVTVPVSGGQPLLGTWQSIVLVDLNQDNPR 119
>pir||C75256 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460422|gb|AAF12133.1|AE002088_10 (AE002088)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 151
Score = 69.1 bits (166), Expect = 2e-11
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 18 ITDEVEKIVRE-SNVKSGLVVVFTRHTTTALTINENES-GLKRDLEELLGKLVPKGMGYM 75
IT EV V E + V+ GL+ V+ +HT+ +LT+NEN S ++RD E VP G
Sbjct: 25 ITREVVAAVPELAGVQVGLLHVWIQHTSASLTVNENASPDVRRDFERYFNHAVPDGWREF 84
Query: 76 HDRID--NNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSILFIE 117
++ ++ +H++ ++GPSL +PV GRL LG WQ I E
Sbjct: 85 EHTLEGPDDMAAHIKASVLGPSLLLPVSGGRLALGRWQGIFLCE 128
>sp|P74125|YI80_SYNY3 HYPOTHETICAL 16.4 KD PROTEIN SLL1880 >gi|7429304|pir||S75650
hypothetical protein sll1880 - Synechocystis sp. (strain
PCC 6803) >gi|1653296|dbj|BAA18211.1| (D90912)
hypothetical protein [Synechocystis sp.]
Length = 147
Score = 68.7 bits (165), Expect = 3e-11
Identities = 44/118 (37%), Positives = 65/118 (54%), Gaps = 4/118 (3%)
Query: 17 DITDEVEKIVRESNVKSGLVVVFTRHTTTALTINEN-ESGLKRDLEELLGKLVPK-GMGY 74
+ +++ +V+ S VK+GL VF RHT+ +L I EN + + DL +LVP+ G Y
Sbjct: 26 NFNSKIQAVVQHSGVKTGLCTVFVRHTSASLIIQENADPDVLTDLAIFFAQLVPEDGRRY 85
Query: 75 MHDRID-NNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSI-LFIELDGPRTREVYVKV 130
H ++ +H+R L S IP+ +GRL LGTWQ + L+ P REV V V
Sbjct: 86 RHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLGTWQGVFLWEHRQRPHQREVIVHV 143
>pir||B82985 conserved hypothetical protein PA5286 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951600|gb|AAG08671.1|AE004941_4 (AE004941)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 141
Score = 67.1 bits (161), Expect = 8e-11
Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 18 ITDEVEKIVRE-SNVKSGLVVVFTRHTTTALTINEN-ESGLKRDLEELLGKLVPKG-MGY 74
+T+E+ + E + GL+ + +HT+ +LT+NEN + ++RD E +L P+G +GY
Sbjct: 19 VTEEILDALPELRRCRVGLLHLLLQHTSASLTLNENADPAVRRDFERFFERLAPRGEVGY 78
Query: 75 MH-DRIDNNAHSHLRGILIGPSLTIPVEDGRLLLGTWQSI 113
H D ++ +H + L+G LT+P++ G L LGTWQ I
Sbjct: 79 EHNDEGPDDLPAHFKASLLGCQLTLPIQSGGLALGTWQGI 118
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48469024
Number of Sequences: 2977
Number of extensions: 1929923
Number of successful extensions: 4251
Number of sequences better than 1.0e-10: 24
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4221
Number of HSP's gapped (non-prelim): 24
length of query: 133
length of database: 189,106,746
effective HSP length: 53
effective length of query: 80
effective length of database: 157,386,935
effective search space: 12590954800
effective search space used: 12590954800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)