BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0943 (nifs-like) DE:CAPREOMYCIN ACETYLTRANSFERASE or
NIFS-LIKE PROTEIN
(386 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75054 capreomycin acetyltransferase or nifs-like protein P... 771 0.0
pir||A71107 hypothetical protein PH0626 - Pyrococcus horikoshii ... 610 e-174
gb|AAK42385.1| NifS protein homolog (nifS) [Sulfolobus solfatari... 136 3e-31
pir||H72558 hypothetical protein APE1754 - Aeropyrum pernix (str... 113 4e-24
sp|P42253|YCBU_BACSU HYPOTHETICAL 40.8 KD PROTEIN IN PCP-LMRB IN... 111 1e-23
pir||E75213 nifs protein PAB0157 - Pyrococcus abyssi (strain Ors... 93 4e-18
pir||G69051 nifS protein - Methanobacterium thermoautotrophicum ... 90 4e-17
pir||JC4557 capreomycin acetyltransferase (EC 2.3.1.-) - Strepto... 82 1e-14
gb|AAA92036.1| (U13077) capreomycin acetyltransferase [Streptomy... 81 3e-14
pir||F70019 nifS protein homolog yurW - Bacillus subtilis >gi|26... 81 3e-14
pir||A83275 hypothetical protein PA2958 [imported] - Pseudomonas... 76 8e-13
pir||A72506 probable tRNA splicing protein SPL1 APE2023 - Aeropy... 75 2e-12
gi|11499012 aspartate aminotransferase (aspC) [Archaeoglobus ful... 73 6e-12
pir||S77167 L-cysteine desulfhydrase (EC 4.4.1.-) - Synechocysti... 71 3e-11
gb|AAD02935.1| (AF061964) L-cysteine/cystine lyase C-DES [Synech... 70 4e-11
pir||G72047 nifs-related aminotransferase - Chlamydophila pneumo... 69 8e-11
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des ... 69 8e-11
>pir||E75054 capreomycin acetyltransferase or nifs-like protein PAB0943 -
Pyrococcus abyssi (strain Orsay)
>gi|5458843|emb|CAB50330.1| (AJ248287) CAPREOMYCIN
ACETYLTRANSFERASE or NIFS-LIKE PROTEIN [Pyrococcus
abyssi]
Length = 386
Score = 771 bits (1970), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MRELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVL 60
MRELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVL
Sbjct: 1 MRELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVL 60
Query: 61 SEAAKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKH 120
SEAAKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKH
Sbjct: 61 SEAAKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKH 120
Query: 121 NLKVEVIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVI 180
NLKVEVIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVI
Sbjct: 121 NLKVEVIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVI 180
Query: 181 VDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTE 240
VDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTE
Sbjct: 181 VDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTE 240
Query: 241 PPVPWSDWWGDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKE 300
PPVPWSDWWGDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKE
Sbjct: 241 PPVPWSDWWGDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKE 300
Query: 301 DLKLAEMVREWALEKGFNVLGDSQITLIVTGIEFEREKEIVRKLNEMGIIVSQRGAKGIH 360
DLKLAEMVREWALEKGFNVLGDSQITLIVTGIEFEREKEIVRKLNEMGIIVSQRGAKGIH
Sbjct: 301 DLKLAEMVREWALEKGFNVLGDSQITLIVTGIEFEREKEIVRKLNEMGIIVSQRGAKGIH 360
Query: 361 GIRVSPHLYNTKEDIEKFIEGIERFL 386
GIRVSPHLYNTKEDIEKFIEGIERFL
Sbjct: 361 GIRVSPHLYNTKEDIEKFIEGIERFL 386
>pir||A71107 hypothetical protein PH0626 - Pyrococcus horikoshii
>gi|3257032|dbj|BAA29715.1| (AP000003) 385aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 385
Score = 610 bits (1557), Expect = e-174
Identities = 288/386 (74%), Positives = 343/386 (88%), Gaps = 1/386 (0%)
Query: 1 MRELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVL 60
MR+LFP L++F AYLNTAGLGLLP+ VL+++ EF L ++ YK+GINAVE++D +YLEP L
Sbjct: 1 MRDLFPALKKFNAYLNTAGLGLLPLNVLEDIAEFFLSMLAYKDGINAVEVMDTIYLEPTL 60
Query: 61 SEAAKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKH 120
EAAKLM+T RN+ LS+QTTDGLKRALLAL+PK+ M I+SFDLEFPTISA+V SY++
Sbjct: 61 KEAAKLMKTSHRNITLSLQTTDGLKRALLALKPKRGMNIVSFDLEFPTISAIVNSYSKLT 120
Query: 121 NLKVEVIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVI 180
+KV+VI++ G+YD+SDVEKA+DD TFAVVFSDVQWITGQ+MPTKEI+EIAHEHGAWVI
Sbjct: 121 GIKVKVIKNNGGIYDLSDVEKAVDDNTFAVVFSDVQWITGQRMPTKEIAEIAHEHGAWVI 180
Query: 181 VDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTE 240
VDAVQSLGAL+VYPEK+GVD+LVAGGEKWLLNPNMGSG+M+LS+RF+EE+KP++GLLNTE
Sbjct: 181 VDAVQSLGALEVYPEKMGVDILVAGGEKWLLNPNMGSGVMFLSNRFIEESKPVLGLLNTE 240
Query: 241 PPVPWSDWWGDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKE 300
PPVPWS+WWGDKDKDLW++LPVR DARKLDPGTP YL+AVALK SLELINDVGIKKIE+
Sbjct: 241 PPVPWSEWWGDKDKDLWEMLPVRKDARKLDPGTPPYLAAVALKASLELINDVGIKKIERN 300
Query: 301 DLKLAEMVREWALEKGFNVLGDSQITLIVTGIEFEREKEIVRKLNEMGIIVSQRGAKGIH 360
+L+LAE V+EWA EKGF LG SQI LI+ G++FE EK+IV KL E IIVSQRGAKGIH
Sbjct: 301 NLRLAERVKEWANEKGFKTLGSSQIVLIM-GLDFEEEKKIVNKLKEDKIIVSQRGAKGIH 359
Query: 361 GIRVSPHLYNTKEDIEKFIEGIERFL 386
GIRVSPH YN K+DIEKF EG+E L
Sbjct: 360 GIRVSPHFYNNKDDIEKFAEGMESLL 385
>gb|AAK42385.1| NifS protein homolog (nifS) [Sulfolobus solfataricus]
Length = 376
Score = 136 bits (340), Expect = 3e-31
Identities = 107/385 (27%), Positives = 187/385 (47%), Gaps = 30/385 (7%)
Query: 2 RELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVLS 61
RE P R++ YLN A + P+ L E +L +V G AV + L + S
Sbjct: 10 RENVPVTRKY-VYLNHASVSPTPLPSLFEAYRYLYEVAN--RGSIAVNEEEEDELYHIRS 66
Query: 62 EAAKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKHN 121
+ + L+ S + L T+ G+ LE K + I++ +LEFPT+ +K
Sbjct: 67 KISNLVGAYSDEISLIPNTSYGVNLVAHGLEWKGDDNIVTDNLEFPTVVYPFLKLTKK-G 125
Query: 122 LKVEVIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVIV 181
+K+ ++E+ ++ D+ ID T V S V + TG ++ ++I + A E+ V++
Sbjct: 126 VKINIVETNPYTFE-EDIISHIDKNTRLVAISHVSFNTGLKVDVRKIVKAARENNTLVLL 184
Query: 182 DAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTEP 241
D +QS GA+++ ++LG+D +AGG KWL++P GSG +Y+ +E+
Sbjct: 185 DIIQSAGAVKINVKELGIDFAIAGGYKWLMSP-QGSGFIYVKRGLIEDP----------- 232
Query: 242 PVPWSDWWGDKDKDLWDILP----VRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKI 297
P+ W D D P + R+ + GT + ++L S E+I + ++ I
Sbjct: 233 --PFYGW--KTSADYLDFNPNKFTLEKGPRRFEIGTVDLAANLSLAKSCEIIGE-NMELI 287
Query: 298 EKEDLKLAEMVREWALEKGFNVLGDSQITLIVTGIEFEREKEIVRKLNEMGIIVSQRGAK 357
E L++ A + V+ + ++ ++ KEI ++L + I+VS RG
Sbjct: 288 ESSVTNLSQFAIRLAKDHSMEVITPEDKRAGIVIVKVKKPKEIAKELLKENIVVSPRG-- 345
Query: 358 GIHGIRVSPHLYNTKEDIEKFIEGI 382
GIR+S H YNT+E+++K IE I
Sbjct: 346 --EGIRISTHFYNTEEEVQKTIEKI 368
>pir||H72558 hypothetical protein APE1754 - Aeropyrum pernix (strain K1)
>gi|5105444|dbj|BAA80757.1| (AP000062) 415aa long
hypothetical protein [Aeropyrum pernix]
Length = 415
Score = 113 bits (280), Expect = 4e-24
Identities = 102/391 (26%), Positives = 175/391 (44%), Gaps = 16/391 (4%)
Query: 1 MRELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVL 60
+RE P R + YL+TAG G L + V V FL + EG E LD + L
Sbjct: 33 VRERIPIFSR-KVYLDTAGAGPLTLDVKDAVEGFL--ELWNSEGEPWGEALDDILESRRL 89
Query: 61 SEAAKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKH 120
A+++ + V T GL L +L+ + ++ + FPT + A +
Sbjct: 90 F--AQMVGAKVEEVAAVPGVTYGLNAFLSSLKLPPDSNVVVSETNFPTGVYTFHAMARRG 147
Query: 121 NLK-VEVIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWV 179
++ V + + +G + E+ IDD T V V WITG + + ++E+AH HGA +
Sbjct: 148 LIREVRIASASDGCVGLDGFERLIDDSTSIVYVDMVSWITGCREDLRTLAELAHSHGALM 207
Query: 180 IVDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPII-GLLN 238
+ D + G + +KLG+D G KWLL + G G Y+S+ L +P+ G +
Sbjct: 208 VSDVFHAAGVYPIDVKKLGLDAAFTGSYKWLLGLH-GGGFAYVSEELLPSLEPMFSGWMA 266
Query: 239 TEPPVPWSDWWGDK-DKDLWDILPVR--GDARKLDPGTPAYLSAVALKPSLELINDVGIK 295
+ V GD +++ R DA+ L+ GT ++ V+LK SL++++
Sbjct: 267 IDDSVMERMARGDPLFSRPFNVREFRRASDAKVLEWGTWPAIAFVSLKASLKMLSAYDAP 326
Query: 296 KIEKEDL-KLAEMVREWALEKGFNVLGDSQITLIVTGIEFEREKEIVRKLNEMGIIVSQR 354
+ +L + + + + G + + + + + R L GI+ S R
Sbjct: 327 GLYASHTGRLVKRLIDSLTDMGVETVTPRGMAAGIVVFRHRHPERLGRFLESRGIVASVR 386
Query: 355 GAKGIHGIRVSPHLYNTKEDIEKFIEGIERF 385
+RVS H YN++ED+E + +E F
Sbjct: 387 PG----SVRVSIHFYNSREDVEALLRALEEF 413
>sp|P42253|YCBU_BACSU HYPOTHETICAL 40.8 KD PROTEIN IN PCP-LMRB INTERGENIC REGION
PRECURSOR (ORF21) >gi|7475675|pir||E69754 nifS protein
homolog ycbU - Bacillus subtilis
>gi|2415717|dbj|BAA22227.1| (AB000617) YcbU [Bacillus
subtilis] >gi|2632552|emb|CAB12060.1| (Z99105) similar
to NifS protein homolog [Bacillus subtilis]
Length = 370
Score = 111 bits (275), Expect = 1e-23
Identities = 103/382 (26%), Positives = 167/382 (42%), Gaps = 28/382 (7%)
Query: 2 RELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVLS 61
R+LFP L+ L + L V + + ++ D + YK G N E ++ E +
Sbjct: 9 RQLFPTLQT-HTMLASCSQSALAEPVSRAIQDYY-DSLLYK-GTNWKEAIEKT--EFARN 63
Query: 62 EAAKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKHN 121
E AKL+ V + +D L L ++ D++FP + V +++++
Sbjct: 64 EFAKLIGAEPDEVAIVPSVSDALVSVASYLTAFGKKHVVYTDMDFPAVPHVWQAHSD--- 120
Query: 122 LKVEVIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVIV 181
V VI S +G+ + E I DET V + G K I+EI+ G+ + V
Sbjct: 121 YTVSVIPSIDGVLPLEQYETHISDETVLTCVPHVHYRDGYVQDIKAIAEISQRKGSLLFV 180
Query: 182 DAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTEP 241
DA QS G + + ++ GVD+L AG K+LL G +Y+ + KP
Sbjct: 181 DAYQSAGHIPIDVKEWGVDMLAAGTRKYLLG-IPGVAFLYVRKELADALKP--------- 230
Query: 242 PVPWSDWWGDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKED 301
S W+G + V AR+ GTPA++S A +L L+N +G+ I
Sbjct: 231 --KASAWFGRESGFDGAYAKV---ARRFQTGTPAFISVYAAAAALSLLNHIGVSHIRDHV 285
Query: 302 LKLAEMVREWALEKGFNV-LGDSQITLIVTGIEFEREKEIVRKLNEMGIIVSQRGAKGIH 360
+ ++A EKG + I + I ER E L + +I + R +
Sbjct: 286 KTICADAVQYAAEKGLQLAAAQGGIQPGMVAIRDERASETAGLLKKKKVICAPRE----N 341
Query: 361 GIRVSPHLYNTKEDIEKFIEGI 382
IR++PH YNTKE++ I+ I
Sbjct: 342 VIRLAPHFYNTKEEMRHAIDEI 363
>pir||E75213 nifs protein PAB0157 - Pyrococcus abyssi (strain Orsay)
>gi|5457665|emb|CAB49156.1| (AJ248283) NIFS PROTEIN
[Pyrococcus abyssi]
Length = 401
Score = 93.2 bits (228), Expect = 4e-18
Identities = 95/392 (24%), Positives = 162/392 (41%), Gaps = 35/392 (8%)
Query: 14 YLNTAGLGLLPITVLKEVTEFLLDV-IKYKEGINAVEILDPMYLEPVLSEAAKLMRTRSR 72
Y + L P V++ + E+ L G++ + + E A +
Sbjct: 19 YFDNTATSLTPKPVIEAMDEYYLRYRANVHRGVHRLSQMATQKYEESRKVVADFINAEFD 78
Query: 73 NVGLSIQTTDGLKRALLALEP--KKNMKIISFDLEFPTISAVVKSYAEKHNLKVEVIESK 130
+ + T++ L L LE KK KI++ E + + A+K LK+E IE
Sbjct: 79 EIAFTKNTSESLNLVALGLEHLFKKGDKIVTTPYEHHSNLLPWQRLAKKKGLKLEFIEGD 138
Query: 131 N-GLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVIVDAVQSLGA 189
+ G D++D EK I V V G +E+ ++ E GA +VDA QS+G
Sbjct: 139 DEGNLDLADAEKKIKGAKLVAV-QHVSNALGVIHEVEELGKMVKEEGAIFVVDAAQSVGH 197
Query: 190 LQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTEPPVPWSDWW 249
++V +KL D L G K + P G G++Y++ F + EPP+
Sbjct: 198 MEVDVKKLKADFLAFSGHKGPMGPT-GIGVLYINKEFFDV---------FEPPLIGGGTI 247
Query: 250 GDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKEDLKLAEMVR 309
D + + + + + GTP A+ L ++ I +GI KIEK++ KL +
Sbjct: 248 EDVELCCYKLTE---PPERFEAGTPNIGGAIGLAAGIKYIEKIGIDKIEKQERKLVKRTT 304
Query: 310 EWALEKGFNVLGDSQITLIVTGIEF--------------EREKEIVRKLNEMGIIVSQRG 355
E E G + + F + K +VR + + V +R
Sbjct: 305 EGLDELEIPWYGPRNLDKHAGVVSFNVPPLHPHDVASVLDEHKIMVRSGHHCALPVMKR- 363
Query: 356 AKGIHG-IRVSPHLYNTKEDIEKFIEGIERFL 386
I+G +R S H+YN+ E++E F+ +E +
Sbjct: 364 -LKINGTVRASFHVYNSLEEVETFLGVLEELV 394
>pir||G69051 nifS protein - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2622499|gb|AAB85866.1| (AE000901) nifS protein
[Methanobacterium thermoautotrophicum]
Length = 400
Score = 90.1 bits (220), Expect = 4e-17
Identities = 98/405 (24%), Positives = 167/405 (41%), Gaps = 54/405 (13%)
Query: 8 LRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVLSEAAKLM 67
L R YL+ A P+ V++ +TE+ + G A + VL KL
Sbjct: 15 LLRDHVYLDAASTTPTPLPVVRAMTEYFKEY-NANTGRGAYSL--------VLRATRKLQ 65
Query: 68 RTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKHN------ 121
R + G ++D + + + + I++ L F +VV E H+
Sbjct: 66 EAREKVAGFINASSDEI---VFTKNTSEAINIVAGGLRFRKGDSVVVPNIEHHSNFLPWL 122
Query: 122 ------LKVEVIES-KNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHE 174
+ V V+++ + G+ D +E A+D+ T V + + G KEI IAH+
Sbjct: 123 RLRERGVDVRVVKADEGGVVDPGRIEDAVDETTRLVTVTHISNALGTVQDVKEIGRIAHD 182
Query: 175 HGAWVIVDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPII 234
GA +VDA QS+G ++V +G D G K L P +G+G +Y S E +P++
Sbjct: 183 VGALYLVDAAQSIGHMEVDVRAIGADFAAFPGHKGTLGP-VGTGFLYCSTDVQGELEPLM 241
Query: 235 GLLNTEPPVPWSDWWGDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGI 294
T V +D + + P K + GT + L S++ +N +GI
Sbjct: 242 LGGGTVLDV-------SEDGYVLEDFPA-----KFEAGTLNIAGFIGLGASIDYMNRIGI 289
Query: 295 KKIEKEDLKLAEMVREWALE-KGFNVLGDSQ--ITLIVTGIEFEREKEIVRKLNEMGIIV 351
++I+K +K+ E + G GD Q ++ I ++ + L+E I
Sbjct: 290 RRIQKHGMKMTEELHATVSSIDGIECYGDPQNIYGILSFNINNMDPHDVAKILDETAGIC 349
Query: 352 SQRGAK---------GIH----GIRVSPHLYNTKEDIEKFIEGIE 383
+ G +H +R S H YNT E+I+ E +E
Sbjct: 350 VRSGHHCAIPAMKHLALHETGGTVRASIHYYNTSEEIQLLGETLE 394
>pir||JC4557 capreomycin acetyltransferase (EC 2.3.1.-) - Streptomyces capreolus
>gi|1223838|gb|AAA92035.1| (U13077) capreomycin
acetyltransferase [Streptomyces capreolus]
>gi|1586532|prf||2204233A capreomycin acetyltransferase
[Streptomyces capreolus]
Length = 359
Score = 81.9 bits (199), Expect = 1e-14
Identities = 82/333 (24%), Positives = 146/333 (43%), Gaps = 31/333 (9%)
Query: 64 AKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKHNLK 123
A LM V + T A A+ +++ ++E+ + + A + +
Sbjct: 36 ASLMGAHPDEVAFTDSATRSWLAAFDAVPLGPGDRVLVTEVEYGGNAIPILHRAREVGFE 95
Query: 124 VEVIESKN-GLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVIVD 182
V I S G D+ + + +D+ V G P +E++ AHE GA V++D
Sbjct: 96 VVTIPSDAVGQVDVEALRELVDERVKLVSLVHAPTNGGLVNPVREVASAAHEVGALVLLD 155
Query: 183 AVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTEPP 242
A QSLG L V ++LGVD++ A G KWL P G+G++ + + +P + L++
Sbjct: 156 ACQSLGQLPVRADELGVDIISATGRKWLRGPR-GTGVLVVCRSAADRLRPRLVDLHS--- 211
Query: 243 VPWSDWWGDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKEDL 302
+W G ++ + +R DAR + + + L + D+GI I E
Sbjct: 212 ---GEWVGPEE------VKLREDARVYELWETSVADRLGLIAAARYALDLGIDAIAAEVR 262
Query: 303 KLAEMVREWALE-KGFNVLG-DSQITLIVTGIEFEREKEIVR-------------KLNEM 347
AE +R E G V ++++ IVT R+ VR L
Sbjct: 263 SRAERLRAGLREVPGVEVRDIGARLSGIVTFTVEGRDPVAVRDELARHDVVVTTSHLTST 322
Query: 348 GIIVSQRGAKGIHGIRVSPHLYNTKEDIEKFIE 380
I +++RG +G+ +R+SPH + + E +++ +E
Sbjct: 323 RIDMTRRGVEGL--VRMSPHYFVSPEQVDRAVE 353
>gb|AAA92036.1| (U13077) capreomycin acetyltransferase [Streptomyces capreolus]
Length = 289
Score = 80.8 bits (196), Expect = 3e-14
Identities = 70/264 (26%), Positives = 122/264 (45%), Gaps = 30/264 (11%)
Query: 132 GLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVIVDAVQSLGALQ 191
G D+ + + +D+ V G P +E++ AHE GA V++DA QSLG L
Sbjct: 35 GQVDVEALRELVDERVKLVSLVHAPTNGGLVNPVREVASAAHEVGALVLLDACQSLGQLP 94
Query: 192 VYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTEPPVPWSDWWGD 251
V ++LGVD++ A G KWL P G+G++ + + +P + L++ +W G
Sbjct: 95 VRADELGVDIISATGRKWLRGPR-GTGVLVVCRSAADRLRPRLVDLHS------GEWVGP 147
Query: 252 KDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKEDLKLAEMVREW 311
++ + +R DAR + + + L + D+GI I E AE +R
Sbjct: 148 EE------VKLREDARVYELWETSVADRLGLIAAARYALDLGIDAIAAEVRSRAERLRAG 201
Query: 312 ALE-KGFNVLG-DSQITLIVTGIEFEREKEIVR-------------KLNEMGIIVSQRGA 356
E G V ++++ IVT R+ VR L I +++RG
Sbjct: 202 LREVPGVEVRDIGARLSGIVTFTVEGRDPVAVRDELARHDVVVTTSHLTSTRIDMTRRGV 261
Query: 357 KGIHGIRVSPHLYNTKEDIEKFIE 380
+G+ +R+SPH + + E +++ +E
Sbjct: 262 EGL--VRMSPHYFVSPEQVDRAVE 283
>pir||F70019 nifS protein homolog yurW - Bacillus subtilis
>gi|2635765|emb|CAB15258.1| (Z99120) similar to NifS
protein homolog [Bacillus subtilis]
Length = 406
Score = 80.8 bits (196), Expect = 3e-14
Identities = 70/270 (25%), Positives = 125/270 (45%), Gaps = 33/270 (12%)
Query: 130 KNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVIVDAVQSLGA 189
++G + DV + + T V S V + G P KE+++IAH++GA ++VD QS
Sbjct: 146 EDGTISLEDVRETVTSNTKIVAVSHVSNVLGTVNPIKEMAKIAHDNGAVIVVDGAQSTPH 205
Query: 190 LQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTEPPVPWSDWW 249
+++ + L D K + P G G++Y LE +P E D+
Sbjct: 206 MKIDVQDLDCDFFALSSHK-MCGPT-GVGVLYGKKALLENMEP------AEFGGEMIDFV 257
Query: 250 GDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKEDLKLAEMVR 309
G + W LP K + GTP A+ L +++ + ++G+ +I + + KLA
Sbjct: 258 G-LYESTWKELP-----WKFEAGTPIIAGAIGLGAAIDFLEEIGLDEISRHEHKLA---- 307
Query: 310 EWALEK-----GFNVLG-DSQITLIVTGIEFEREKEIVRKLNEMGIIV------SQRGAK 357
+ALE+ G V G + + L+ ++ ++ L+ GI V +Q K
Sbjct: 308 AYALERFRQLDGVTVYGPEERAGLVTFNLDDVHPHDVATVLDAEGIAVRAGHHCAQPLMK 367
Query: 358 GIH---GIRVSPHLYNTKEDIEKFIEGIER 384
+ R S +LYNT+E+I+K +E +++
Sbjct: 368 WLDVTATARASFYLYNTEEEIDKLVEALQK 397
>pir||A83275 hypothetical protein PA2958 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949056|gb|AAG06346.1|AE004722_2
(AE004722) hypothetical protein [Pseudomonas aeruginosa]
Length = 377
Score = 75.7 bits (183), Expect = 8e-13
Identities = 90/375 (24%), Positives = 164/375 (43%), Gaps = 37/375 (9%)
Query: 14 YLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVLSEA-AKLMRTRS- 71
YLN A + P V+ F + + + A + + + +E L E A+L+ R+
Sbjct: 16 YLNHAAVAPWPRRAADAVSAFARENVAH----GASDYPEWLKIEHRLRERLARLLNARAG 71
Query: 72 RNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKHNLKVEVIE-SK 130
++ L T++ L L+ ++ +++ + EFP+ V ++ + VEV+E
Sbjct: 72 SDLALVKNTSEALSFVAFGLDWREGDQVVIGNEEFPSNRVVWEALRPRG---VEVVEVGL 128
Query: 131 NGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVIVDAVQSLGAL 190
G S + A T + S VQ+ +G ++ + I G +DA+Q LGAL
Sbjct: 129 AGDDPESALLAACGPRTRLLSISAVQYASGLRLDLERIGAGCRRRGVLFCIDAIQQLGAL 188
Query: 191 QVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTEPPVPWSDWWG 250
+ +A G KW+L P G G+ Y E + + L W
Sbjct: 189 PFDVQAYDCAFAMADGYKWMLGPE-GLGVFYCH----PEQRERLAL----HEYGWHMLEH 239
Query: 251 DKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGIKKIEKEDLKLAEMVRE 310
D + D P R AR+ + G+P L A+AL+ SL L+ +VG++++ ++ +AE V +
Sbjct: 240 ALDYERRDWRPAR-SARRFECGSPNMLGAMALEASLGLLEEVGMERVGRD---IAERV-Q 294
Query: 311 WALEKGFNVLG---------DSQITLIVTGIEFEREKEIVRKLNEMGIIVSQRGAKGIHG 361
W + + G + ++ ++ + + + L + +I +QRG G
Sbjct: 295 WLQDGLSGIPGVRLHSPRNPSRRAGILTFSLDGQDNRTLFETLRQERVICAQRGG----G 350
Query: 362 IRVSPHLYNTKEDIE 376
IR SPH Y + I+
Sbjct: 351 IRFSPHFYTSSTVID 365
>pir||A72506 probable tRNA splicing protein SPL1 APE2023 - Aeropyrum pernix
(strain K1) >gi|5105721|dbj|BAA81033.1| (AP000063) 411aa
long hypothetical tRNA splicing protein SPL1 [Aeropyrum
pernix]
Length = 411
Score = 74.5 bits (180), Expect = 2e-12
Identities = 94/418 (22%), Positives = 177/418 (41%), Gaps = 51/418 (12%)
Query: 1 MRELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLL-DVIKYKEGINAVEILDPMYLEPV 59
+R FP L R YL+ A L P V++ + EF G++ + + E
Sbjct: 9 VRSEFPELERGIVYLDNAASTLKPRRVVEAMREFSYRSYANVHRGVHRLSMEASKAYEDA 68
Query: 60 LSEAAKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMK-----IISFDLEFPTISAVVK 114
A+L+ V + TT+ ++ A L L ++ + + D + V
Sbjct: 69 HEVVARLVGGSWDEVVFTRNTTEAMQLAALTLAYNGLLRGGEVLVTAADHHSTLLPWVRA 128
Query: 115 SYAEKHNLKVEVIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHE 174
+ ++ ++ + G+ +E I ++T AV V +TG P ++I + A +
Sbjct: 129 ARLGGGRARILPLDGR-GVPRWDLLEDYITEDTRAVAVGHVSNVTGVVAPVEDIVKAAKK 187
Query: 175 HGAWVIVDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPII 234
GA V++D+ Q + L V ++GVD+ G K +L P G G+++ LEE +P +
Sbjct: 188 VGALVVLDSAQGVPHLPVDFRRMGVDMAAFSGHK-MLGPT-GIGVLWARRDLLEELEPPL 245
Query: 235 GLLNTEPPVPWSDWWGDKDKDLWDILPVRGDARKLDPGTPAYLSAVALKPSLELINDVGI 294
G T V G + W+ P K + GTP + AV L + ++ ++G+
Sbjct: 246 GGGGTVSRVRLQ---GGSVEIEWEEPP-----WKFEAGTPPIIEAVGLAEAANMLMEIGM 297
Query: 295 KKIEKED-------LKLAEMVREWALEK--GFNVLGDSQITLIVTGIEFEREKEIVRKLN 345
+ + + + +KL E + L + G + G+ + +T ++ +
Sbjct: 298 EHVARHEDELTSHTMKLLEPLYSEGLIRYVGPDKPGERHGIVSIT--------THLKSPD 349
Query: 346 EMGIIVSQRG---AKGIH--------------GIRVSPHLYNTKEDIEKFIEGIERFL 386
E+G+++ +RG G+H + S ++YN KED E+ E +E L
Sbjct: 350 ELGLLLDRRGIAVRTGLHCAHILHDHVDASMGSVWASFYIYNCKEDAERLAEALEEIL 407
>gi|11499012 aspartate aminotransferase (aspC) [Archaeoglobus fulgidus]
>gi|7434112|pir||H69426 probable transaminase (EC
2.6.1.-) AF1417 [similarity] - Archaeoglobus fulgidus
>gi|2649155|gb|AAB89830.1| (AE001006) aspartate
aminotransferase (aspC) [Archaeoglobus fulgidus]
Length = 372
Score = 73.0 bits (176), Expect = 6e-12
Identities = 72/281 (25%), Positives = 130/281 (45%), Gaps = 33/281 (11%)
Query: 81 TDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKHNLKVEVIESKNGLYDISDVE 140
T G++ A+ + K + + + + + Y + +KV ES +++ V+
Sbjct: 60 TAGMEAAIASFSRVKKIATLENGKFGERLGDIAERYTQVERVKVPWGES----FELDAVK 115
Query: 141 KAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGAWVIVDAVQSLGALQVYPEKLGVD 200
+A+D+ AV F + TG P KEI+++A E+ A VI+DA+ S G V ++ GVD
Sbjct: 116 EALDNGCEAVAFVHNETSTGILNPAKEIAKLAKEYDALVIMDAITSAGGDYVKMDEWGVD 175
Query: 201 VLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTEPPVPWSDWWGDKDKDLWDIL 260
V + G +K L P G + +S++ W D++ ++ D+
Sbjct: 176 VAIVGSQKCLGAP-PGLAAVAVSEK------------------AW-DYYNERCPYYLDLA 215
Query: 261 PVRGDARKLD-PGTPAYLSAVALKPSLELINDVGIKKIEKEDLKLAEMVREWALEKGFNV 319
R + + P TPA AL +L++I++ G++ + L+ VR+WA+E G +
Sbjct: 216 AYRKKLKDMQTPYTPAVPLFFALAEALKIIDEEGLENRIQRHRILSAAVRKWAVEAGLEL 275
Query: 320 LGD----SQITLIVTGIEFER---EKEIVRKL-NEMGIIVS 352
+ S + VT I+ + E+ L E GI+VS
Sbjct: 276 FPNLNKYSSYSNTVTAIKMPEGVSDSELRGTLKKEYGILVS 316
>pir||S77167 L-cysteine desulfhydrase (EC 4.4.1.-) - Synechocystis sp. (strain
PCC 6803) >gi|1652806|dbj|BAA17725.1| (D90908)
isopenicillin N epimerase [Synechocystis sp.]
Length = 401
Score = 70.6 bits (170), Expect = 3e-11
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 2 RELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVLS 61
R+ FPGL + Y N G G+LP L+ +T + Y + I Y++ +++
Sbjct: 11 RQQFPGLAN-KTYFNFGGQGILPTVALEAITA----MYGYLQENGPFSIAANQYIQQLIA 65
Query: 62 EAAKLM----RTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYA 117
+ + + + ++ T G L ++ +K +I+ D E P I A+V++ A
Sbjct: 66 QLRQALGETFNVDPNTITITDNVTTGCDIVLWGIDWQKGDEILLTDCEHPGIIAIVQAIA 125
Query: 118 EKHNLKVE---VIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHE 174
+ + V ++ N + + + +T V+ S + W TGQ +P EI +
Sbjct: 126 ARFGVTYRFFPVADTLNQGDAAAVLVNHLGPKTRLVILSHLLWNTGQVLPLGEIMAVCRR 185
Query: 175 HGA----WVIVDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYL 222
H V+VD QS G+L + +L VD G KW P G G +Y+
Sbjct: 186 HQGDYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGP-AGVGGLYI 236
>gb|AAD02935.1| (AF061964) L-cysteine/cystine lyase C-DES [Synechocystis PCC6714]
Length = 393
Score = 70.2 bits (169), Expect = 4e-11
Identities = 61/242 (25%), Positives = 102/242 (41%), Gaps = 17/242 (7%)
Query: 2 RELFPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVLS 61
R FPGL + Y N G G+LP L+ +T + Y + I +++ +++
Sbjct: 11 RHQFPGLAN-KTYFNFGGQGILPTVALEAITA----MYGYLQENGPFSIAANQHIQQLIA 65
Query: 62 EA----AKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYA 117
+ A+ + ++ T G L L+ + +I+ D E P I A+V++ A
Sbjct: 66 QLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIA 125
Query: 118 EKHNLKVE---VIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHE 174
+ + V + N + + + +T V+ S + W TGQ +P EI +
Sbjct: 126 ARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRR 185
Query: 175 HGA----WVIVDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEA 230
H V+VD QS G+L + +L VD G KW P G G +Y+ L E
Sbjct: 186 HQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEI 244
Query: 231 KP 232
P
Sbjct: 245 NP 246
>pir||G72047 nifs-related aminotransferase - Chlamydophila pneumoniae (strain
CWL029) >gi|4376991|gb|AAD18828.1| (AE001651)
NifS-related Aminotransferase [Chlamydophila pneumoniae
CWL029] >gi|8163356|gb|AAF73623.1| (AE002169)
aminotransferase, class V [Chlamydophila pneumoniae
AR39] >gi|8979061|dbj|BAA98896.1| (AP002547)
NifS-related aminotransferase [Chlamydophila pneumoniae
J138]
Length = 406
Score = 69.1 bits (166), Expect = 8e-11
Identities = 75/307 (24%), Positives = 135/307 (43%), Gaps = 40/307 (13%)
Query: 88 LLALEPKKNMKIISFDLEFPTISAVVKSYAEKHNLKVEVIESKNGLYDISDVEKAIDDET 147
+L E + + ++S+++ ++VK K+ V +S GL D+ D+EK +++
Sbjct: 113 VLVSEAEHHANVLSWEIACRRRGSLVK--------KIRVHDS--GLIDLDDLEKLLNEGA 162
Query: 148 FAVVFSDVQWITGQQMPTKEISEIAHEHGAWVIVDAVQSLGALQVYPEKLGVDVLVAGGE 207
V V +TG P ++++E+ H + A++ VD Q L + + VD V
Sbjct: 163 QFVSIPHVSNVTGCVQPLQQVAELVHRYDAYLAVDGAQGAPHLPIDVQLWDVDFYVFSSH 222
Query: 208 KWLLNPNMGSGIMYLSDRFLEEAKPIIGLLNTEPPVPWSDWWGDKDKDLWDILPVRGDAR 267
K + P G G++Y L++ P+ G D D + LP
Sbjct: 223 K-IYGPT-GIGVLYGKKDLLDQLPPVEG---------GGDMVAIYDHQNPEYLPA---PM 268
Query: 268 KLDPGTPAYLSAVALKPSLELINDVGIKKIEKEDLKLAEMVREWALE-KGFNVLGDS--- 323
K + GTP + L +L+ ++ + K I +++ L + + LE G +LG S
Sbjct: 269 KFEAGTPNIAGVLGLGAALDYLDGLSAKFIYDKEIALTTYLHKELLEIPGVEILGPSIEE 328
Query: 324 -QITLIVTGIEFEREKEIVRKLNEMGIIV----------SQRGAKGIHGIRVSPHLYNTK 372
+ LI I+ ++ L+ GI V +R G H +RVS +YN +
Sbjct: 329 PRGALIGMTIDGAHPLDLGFLLDLRGIAVRTGHQCAQPAMERWNVG-HVLRVSLGIYNDE 387
Query: 373 EDIEKFI 379
+DI++FI
Sbjct: 388 DDIDQFI 394
>pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
>gi|7767012|pdb|1ELU|B Chain B, Complex Between The
Cystine C-S Lyase C-Des And Its Reaction Product
Cysteine Persulfide. >gi|7767009|pdb|1ELQ|A Chain A,
Crystal Structure Of The Cystine C-S Lyase C-Des
>gi|7767010|pdb|1ELQ|B Chain B, Crystal Structure Of The
Cystine C-S Lyase C-Des
Length = 390
Score = 69.1 bits (166), Expect = 8e-11
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 17/239 (7%)
Query: 5 FPGLRRFRAYLNTAGLGLLPITVLKEVTEFLLDVIKYKEGINAVEILDPMYLEPVLSEA- 63
FPGL + Y N G G+LP L+ +T + Y + I +++ ++++
Sbjct: 11 FPGLAN-KTYFNFGGQGILPTVALEAITA----MYGYLQENGPFSIAANQHIQQLIAQLR 65
Query: 64 ---AKLMRTRSRNVGLSIQTTDGLKRALLALEPKKNMKIISFDLEFPTISAVVKSYAEKH 120
A+ + ++ T G L L+ + +I+ D E P I A+V++ A +
Sbjct: 66 QALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARF 125
Query: 121 NLKVE---VIESKNGLYDISDVEKAIDDETFAVVFSDVQWITGQQMPTKEISEIAHEHGA 177
+ V + N + + + +T V+ S + W TGQ +P EI + H
Sbjct: 126 GITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQG 185
Query: 178 ----WVIVDAVQSLGALQVYPEKLGVDVLVAGGEKWLLNPNMGSGIMYLSDRFLEEAKP 232
V+VD QS G+L + +L VD G KW P G G +Y+ L E P
Sbjct: 186 NYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINP 243
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143310018
Number of Sequences: 2977
Number of extensions: 6192214
Number of successful extensions: 16687
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 16657
Number of HSP's gapped (non-prelim): 19
length of query: 386
length of database: 189,106,746
effective HSP length: 56
effective length of query: 330
effective length of database: 155,591,474
effective search space: 51345186420
effective search space used: 51345186420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)