BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0944 (PAB0944) DE:Hypothetical protein
(157 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75054 hypothetical protein PAB0944 - Pyrococcus abyssi (st... 308 2e-83
pir||G71106 hypothetical protein PH0624 - Pyrococcus horikoshii ... 284 3e-76
pir||A69120 conserved hypothetical protein MTH1896 - Methanobact... 111 4e-24
gb|AAF50749.2| (AE003565) CG10575 gene product [Drosophila melan... 99 3e-20
pir||E64428 hypothetical protein MJ1030 - Methanococcus jannasch... 97 1e-19
emb|CAC12319.1| (AL445066) conserved hypothetical protein [Therm... 96 2e-19
gi|11499788 conserved hypothetical protein [Archaeoglobus fulgid... 88 6e-17
gi|6321716 Ygr277cp [Saccharomyces cerevisiae] >gi|1723781|sp|P5... 87 1e-16
gb|AAD15511.1| (AC006439) hypothetical protein [Arabidopsis thal... 86 2e-16
>pir||G75054 hypothetical protein PAB0944 - Pyrococcus abyssi (strain Orsay)
>gi|5458845|emb|CAB50332.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 157
Score = 308 bits (781), Expect = 2e-83
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MMKFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRL 60
MMKFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRL
Sbjct: 1 MMKFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRL 60
Query: 61 KDLIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP 120
KDLIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP
Sbjct: 61 KDLIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP 120
Query: 121 LEIIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIKRE 157
LEIIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIKRE
Sbjct: 121 LEIIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIKRE 157
>pir||G71106 hypothetical protein PH0624 - Pyrococcus horikoshii
>gi|3257030|dbj|BAA29713.1| (AP000003) 177aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 177
Score = 284 bits (720), Expect = 3e-76
Identities = 144/155 (92%), Positives = 150/155 (95%)
Query: 1 MMKFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRL 60
M +FKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSD+MVK KPYAEKILPYERRL
Sbjct: 20 MKRFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDEMVKEKPYAEKILPYERRL 79
Query: 61 KDLIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP 120
KDLIEFLEVNNF+ YRIIKINNAIGFTT IRSLEAIVVSEETYKGAL+VNRAREEVGL+P
Sbjct: 80 KDLIEFLEVNNFKGYRIIKINNAIGFTTEIRSLEAIVVSEETYKGALIVNRAREEVGLKP 139
Query: 121 LEIIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIK 155
LEIIVIPIIKSKLG KISSSLIRAGLIDPFGNP+K
Sbjct: 140 LEIIVIPIIKSKLGCKISSSLIRAGLIDPFGNPMK 174
>pir||A69120 conserved hypothetical protein MTH1896 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2623029|gb|AAB86356.1| (AE000941) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 171
Score = 111 bits (275), Expect = 4e-24
Identities = 67/154 (43%), Positives = 91/154 (58%), Gaps = 3/154 (1%)
Query: 3 KFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRLKD 62
K+ V VGGTFDR H GH+ LL +AF VG+ V IG+TSD+ K E I P R+K+
Sbjct: 11 KYSLVAVGGTFDRFHKGHRRLLDEAFRVGETVMIGVTSDEFAAAK--GEGIEPCSVRMKN 68
Query: 63 LIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPLE 122
L E+L + Y ++++++ G T + EAIVVS ET A +N R G R L+
Sbjct: 69 LEEYLRDKD-ADYHVMRLDDPYGTTVTDEAFEAIVVSRETEPVAREINAIRRNRGFRELD 127
Query: 123 IIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIKR 156
II I ++ + G ISS+ IR G IDP G+ IKR
Sbjct: 128 IITIDMVNADDGIPISSTRIRRGEIDPMGHIIKR 161
>gb|AAF50749.2| (AE003565) CG10575 gene product [Drosophila melanogaster]
Length = 518
Score = 98.7 bits (242), Expect = 3e-20
Identities = 62/151 (41%), Positives = 87/151 (57%), Gaps = 7/151 (4%)
Query: 4 FKKVVVGGTFDRLHLGHKALLRKA-FEVGKIVYIGLTSDDMVKNKPYAEKILPYERRLKD 62
+ VV+GGTFDR+HLGHK L +A K + +G+T+ M K K + ILP E R+
Sbjct: 144 YPSVVLGGTFDRIHLGHKIFLTQAVLRTCKRLVVGVTTSAMTKGKTLPDLILPVEERIAR 203
Query: 63 LIEFL-EVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPL 121
L EFL ++++ +Y I+ I++ G T L+ IVVS ET +G VN R LR L
Sbjct: 204 LREFLVDIDDTLQYEIVPIDDPFGPTQVDPDLDMIVVSAETLRGGQKVNEVRSAKQLREL 263
Query: 122 EIIVIPIIKSKLGD-----KISSSLIRAGLI 147
EI VI I++S + D K+SSS R L+
Sbjct: 264 EIFVIDIVESNVHDGIHETKVSSSNTRIDLL 294
>pir||E64428 hypothetical protein MJ1030 - Methanococcus jannaschii
>gi|1591685|gb|AAB99034.1| (U67545) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 147
Score = 96.7 bits (237), Expect = 1e-19
Identities = 65/150 (43%), Positives = 90/150 (59%), Gaps = 4/150 (2%)
Query: 6 KVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRLKDLIE 65
KVVVGGTFD LH GHK LL+ A +GK+ IG+TSD+ K K KI + R+++L +
Sbjct: 2 KVVVGGTFDILHRGHKELLKFASSLGKLT-IGITSDEFAK-KYKTHKINDLKTRIENLKK 59
Query: 66 FLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPLEIIV 125
FL+ Y I IN+A G + IVV++ET K A +N+ RE GL+PL+I++
Sbjct: 60 FLDSIK-ADYEIKVINDAYGDAIT-EDYDIIVVTQETLKNAEKINKIRESKGLKPLKIVI 117
Query: 126 IPIIKSKLGDKISSSLIRAGLIDPFGNPIK 155
I ++ G IS++ IR G ID G IK
Sbjct: 118 FKPILAEDGKPISTTRIRKGEIDEEGRIIK 147
>emb|CAC12319.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 328
Score = 96.3 bits (236), Expect = 2e-19
Identities = 63/148 (42%), Positives = 85/148 (56%), Gaps = 4/148 (2%)
Query: 8 VVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMV-KNKPYAEKILPYERRLKDLIEF 66
VVGGTF +LH GHKALL A + G V IGLTSD+ V KNK Y +PY R + L +
Sbjct: 4 VVGGTFSKLHKGHKALLNTAIDTGNEVVIGLTSDEYVKKNKVY--PAIPYSVRYRTLYNY 61
Query: 67 LEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPLEIIVI 126
+ + ++RI +I++ G + E IVVS ETY +L +N R GL PL+II +
Sbjct: 62 M-IKRTNKFRIRQIDDRNGNAPYEKDYEVIVVSPETYPRSLKINEIRISNGLPPLKIIRV 120
Query: 127 PIIKSKLGDKISSSLIRAGLIDPFGNPI 154
P + ++ ISS+ I G ID G I
Sbjct: 121 PYVLAQDLFPISSTRIINGEIDTNGKRI 148
>gi|11499788 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450077|pir||F69525 conserved hypothetical protein
AF2206 - Archaeoglobus fulgidus
>gi|2648319|gb|AAB89047.1| (AE000953) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 148
Score = 87.8 bits (214), Expect = 6e-17
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 6 KVVVGGTFDRLHLGHKALLRKAFEVG-KIVYIGLTSDDMVKNKPYAEKILPYERRLKDLI 64
KV +GGTF+ LH GHK L+ A ++G + + IG+TSD M + + +LP+ R +++
Sbjct: 2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARAR--IRSVLPFAIRAENVK 59
Query: 65 EFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPLEII 124
++ I+KI N G T + E +VVS ETY+ AL +N+ REE+G R + I+
Sbjct: 60 RYVMRKYGFEPEIVKITNPYGKTLDV-DFEYLVVSPETYEMALKINQKREELGKRKITIV 118
Query: 125 VIPIIKSKLGDKISSSLIRAGLIDPFGNPI 154
+ + ++ G ISS+ I+ G ID +G I
Sbjct: 119 KVDWMMAEDGKPISSTRIKRGEIDRYGGII 148
>gi|6321716 Ygr277cp [Saccharomyces cerevisiae]
>gi|1723781|sp|P53332|YG5T_YEAST HYPOTHETICAL 34.3 KD
PROTEIN IN TAF145-YOR1 INTERGENIC REGION
>gi|2131717|pir||S64612 hypothetical protein YGR277c -
yeast (Saccharomyces cerevisiae)
>gi|1323505|emb|CAA97307.1| (Z73062) ORF YGR277c
[Saccharomyces cerevisiae]
Length = 305
Score = 87.0 bits (212), Expect = 1e-16
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 6/147 (4%)
Query: 3 KFKKVVVGGTFDRLHLGHKALLR-KAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRLK 61
KF +GGTFD +H GHK LL F + + G+T D++++NK Y E I PY+ R +
Sbjct: 141 KFHVTALGGTFDHIHDGHKILLSVSTFITSQRLICGITCDELLQNKKYKELIEPYDTRCR 200
Query: 62 DLIEFLEV-NNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP 120
+ +F+++ ++ + + G T ++ +E +VVS ET GA VN+ R E G+ P
Sbjct: 201 HVHQFIKLLKPDLSVELVPLRDVCGPTGKVPEIECLVVSRETVSGAETVNKTRIEKGMSP 260
Query: 121 LEIIVIPIIKSKLGD----KISSSLIR 143
L + V+ ++ + D K+SS+ IR
Sbjct: 261 LAVHVVNVLGGREEDGWSEKLSSTEIR 287
>gb|AAD15511.1| (AC006439) hypothetical protein [Arabidopsis thaliana]
Length = 176
Score = 85.8 bits (209), Expect = 2e-16
Identities = 55/145 (37%), Positives = 86/145 (58%), Gaps = 7/145 (4%)
Query: 4 FKKVVVGGTFDRLHLGHKALLRKAFEVGKI-VYIGLTSDDMVKNKPYAEKILPYERRLKD 62
F VV+GGTFDRLH GH+ L+ A E+ + + +G+ M+ K +++ I P E R+++
Sbjct: 15 FGAVVLGGTFDRLHDGHRMFLKAAAELARDRIVVGVCDGPMLTKKQFSDMIQPIEERMRN 74
Query: 63 LIEFLEVNNFRRYRIIK---INNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLR 119
+ + V + + +++ I + G + +LEAIVVS+ET G L VNR R E GL
Sbjct: 75 VETY--VKSIKPELVVQAEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNRKRAERGLS 132
Query: 120 PLEIIVIPIIK-SKLGDKISSSLIR 143
L+I V+ I+ G+KISSS +R
Sbjct: 133 QLKIEVVEIVSDGSSGNKISSSTLR 157
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.144 0.398
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53560865
Number of Sequences: 2977
Number of extensions: 2019325
Number of successful extensions: 4973
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4962
Number of HSP's gapped (non-prelim): 9
length of query: 157
length of database: 189,106,746
effective HSP length: 54
effective length of query: 103
effective length of database: 156,788,448
effective search space: 16149210144
effective search space used: 16149210144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)