BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0944 (PAB0944) DE:Hypothetical protein
         (157 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75054 hypothetical protein PAB0944 - Pyrococcus abyssi (st...   308  2e-83
pir||G71106 hypothetical protein PH0624 - Pyrococcus horikoshii ...   284  3e-76
pir||A69120 conserved hypothetical protein MTH1896 - Methanobact...   111  4e-24
gb|AAF50749.2| (AE003565) CG10575 gene product [Drosophila melan...    99  3e-20
pir||E64428 hypothetical protein MJ1030 - Methanococcus jannasch...    97  1e-19
emb|CAC12319.1| (AL445066) conserved hypothetical protein [Therm...    96  2e-19
gi|11499788 conserved hypothetical protein [Archaeoglobus fulgid...    88  6e-17
gi|6321716 Ygr277cp [Saccharomyces cerevisiae] >gi|1723781|sp|P5...    87  1e-16
gb|AAD15511.1| (AC006439) hypothetical protein [Arabidopsis thal...    86  2e-16

>pir||G75054 hypothetical protein PAB0944 - Pyrococcus abyssi (strain Orsay)
           >gi|5458845|emb|CAB50332.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 157
           
 Score =  308 bits (781), Expect = 2e-83
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MMKFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRL 60
           MMKFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRL
Sbjct: 1   MMKFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRL 60

Query: 61  KDLIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP 120
           KDLIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP
Sbjct: 61  KDLIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP 120

Query: 121 LEIIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIKRE 157
           LEIIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIKRE
Sbjct: 121 LEIIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIKRE 157


>pir||G71106 hypothetical protein PH0624 - Pyrococcus horikoshii
           >gi|3257030|dbj|BAA29713.1| (AP000003) 177aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 177
           
 Score =  284 bits (720), Expect = 3e-76
 Identities = 144/155 (92%), Positives = 150/155 (95%)

Query: 1   MMKFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRL 60
           M +FKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSD+MVK KPYAEKILPYERRL
Sbjct: 20  MKRFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDEMVKEKPYAEKILPYERRL 79

Query: 61  KDLIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP 120
           KDLIEFLEVNNF+ YRIIKINNAIGFTT IRSLEAIVVSEETYKGAL+VNRAREEVGL+P
Sbjct: 80  KDLIEFLEVNNFKGYRIIKINNAIGFTTEIRSLEAIVVSEETYKGALIVNRAREEVGLKP 139

Query: 121 LEIIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIK 155
           LEIIVIPIIKSKLG KISSSLIRAGLIDPFGNP+K
Sbjct: 140 LEIIVIPIIKSKLGCKISSSLIRAGLIDPFGNPMK 174


>pir||A69120 conserved hypothetical protein MTH1896 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2623029|gb|AAB86356.1| (AE000941) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 171
           
 Score =  111 bits (275), Expect = 4e-24
 Identities = 67/154 (43%), Positives = 91/154 (58%), Gaps = 3/154 (1%)

Query: 3   KFKKVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRLKD 62
           K+  V VGGTFDR H GH+ LL +AF VG+ V IG+TSD+    K   E I P   R+K+
Sbjct: 11  KYSLVAVGGTFDRFHKGHRRLLDEAFRVGETVMIGVTSDEFAAAK--GEGIEPCSVRMKN 68

Query: 63  LIEFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPLE 122
           L E+L   +   Y ++++++  G T    + EAIVVS ET   A  +N  R   G R L+
Sbjct: 69  LEEYLRDKD-ADYHVMRLDDPYGTTVTDEAFEAIVVSRETEPVAREINAIRRNRGFRELD 127

Query: 123 IIVIPIIKSKLGDKISSSLIRAGLIDPFGNPIKR 156
           II I ++ +  G  ISS+ IR G IDP G+ IKR
Sbjct: 128 IITIDMVNADDGIPISSTRIRRGEIDPMGHIIKR 161


>gb|AAF50749.2| (AE003565) CG10575 gene product [Drosophila melanogaster]
           Length = 518
           
 Score = 98.7 bits (242), Expect = 3e-20
 Identities = 62/151 (41%), Positives = 87/151 (57%), Gaps = 7/151 (4%)

Query: 4   FKKVVVGGTFDRLHLGHKALLRKA-FEVGKIVYIGLTSDDMVKNKPYAEKILPYERRLKD 62
           +  VV+GGTFDR+HLGHK  L +A     K + +G+T+  M K K   + ILP E R+  
Sbjct: 144 YPSVVLGGTFDRIHLGHKIFLTQAVLRTCKRLVVGVTTSAMTKGKTLPDLILPVEERIAR 203

Query: 63  LIEFL-EVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPL 121
           L EFL ++++  +Y I+ I++  G T     L+ IVVS ET +G   VN  R    LR L
Sbjct: 204 LREFLVDIDDTLQYEIVPIDDPFGPTQVDPDLDMIVVSAETLRGGQKVNEVRSAKQLREL 263

Query: 122 EIIVIPIIKSKLGD-----KISSSLIRAGLI 147
           EI VI I++S + D     K+SSS  R  L+
Sbjct: 264 EIFVIDIVESNVHDGIHETKVSSSNTRIDLL 294


>pir||E64428 hypothetical protein MJ1030 - Methanococcus jannaschii
           >gi|1591685|gb|AAB99034.1| (U67545) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 147
           
 Score = 96.7 bits (237), Expect = 1e-19
 Identities = 65/150 (43%), Positives = 90/150 (59%), Gaps = 4/150 (2%)

Query: 6   KVVVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRLKDLIE 65
           KVVVGGTFD LH GHK LL+ A  +GK+  IG+TSD+  K K    KI   + R+++L +
Sbjct: 2   KVVVGGTFDILHRGHKELLKFASSLGKLT-IGITSDEFAK-KYKTHKINDLKTRIENLKK 59

Query: 66  FLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPLEIIV 125
           FL+      Y I  IN+A G        + IVV++ET K A  +N+ RE  GL+PL+I++
Sbjct: 60  FLDSIK-ADYEIKVINDAYGDAIT-EDYDIIVVTQETLKNAEKINKIRESKGLKPLKIVI 117

Query: 126 IPIIKSKLGDKISSSLIRAGLIDPFGNPIK 155
              I ++ G  IS++ IR G ID  G  IK
Sbjct: 118 FKPILAEDGKPISTTRIRKGEIDEEGRIIK 147


>emb|CAC12319.1| (AL445066) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 328
           
 Score = 96.3 bits (236), Expect = 2e-19
 Identities = 63/148 (42%), Positives = 85/148 (56%), Gaps = 4/148 (2%)

Query: 8   VVGGTFDRLHLGHKALLRKAFEVGKIVYIGLTSDDMV-KNKPYAEKILPYERRLKDLIEF 66
           VVGGTF +LH GHKALL  A + G  V IGLTSD+ V KNK Y    +PY  R + L  +
Sbjct: 4   VVGGTFSKLHKGHKALLNTAIDTGNEVVIGLTSDEYVKKNKVY--PAIPYSVRYRTLYNY 61

Query: 67  LEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPLEIIVI 126
           + +    ++RI +I++  G     +  E IVVS ETY  +L +N  R   GL PL+II +
Sbjct: 62  M-IKRTNKFRIRQIDDRNGNAPYEKDYEVIVVSPETYPRSLKINEIRISNGLPPLKIIRV 120

Query: 127 PIIKSKLGDKISSSLIRAGLIDPFGNPI 154
           P + ++    ISS+ I  G ID  G  I
Sbjct: 121 PYVLAQDLFPISSTRIINGEIDTNGKRI 148


>gi|11499788 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7450077|pir||F69525 conserved hypothetical protein
           AF2206 - Archaeoglobus fulgidus
           >gi|2648319|gb|AAB89047.1| (AE000953) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 148
           
 Score = 87.8 bits (214), Expect = 6e-17
 Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 4/150 (2%)

Query: 6   KVVVGGTFDRLHLGHKALLRKAFEVG-KIVYIGLTSDDMVKNKPYAEKILPYERRLKDLI 64
           KV +GGTF+ LH GHK L+  A ++G + + IG+TSD M + +     +LP+  R +++ 
Sbjct: 2   KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARAR--IRSVLPFAIRAENVK 59

Query: 65  EFLEVNNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRPLEII 124
            ++         I+KI N  G T  +   E +VVS ETY+ AL +N+ REE+G R + I+
Sbjct: 60  RYVMRKYGFEPEIVKITNPYGKTLDV-DFEYLVVSPETYEMALKINQKREELGKRKITIV 118

Query: 125 VIPIIKSKLGDKISSSLIRAGLIDPFGNPI 154
            +  + ++ G  ISS+ I+ G ID +G  I
Sbjct: 119 KVDWMMAEDGKPISSTRIKRGEIDRYGGII 148


>gi|6321716 Ygr277cp [Saccharomyces cerevisiae]
           >gi|1723781|sp|P53332|YG5T_YEAST HYPOTHETICAL 34.3 KD
           PROTEIN IN TAF145-YOR1 INTERGENIC REGION
           >gi|2131717|pir||S64612 hypothetical protein YGR277c -
           yeast (Saccharomyces cerevisiae)
           >gi|1323505|emb|CAA97307.1| (Z73062) ORF YGR277c
           [Saccharomyces cerevisiae]
           Length = 305
           
 Score = 87.0 bits (212), Expect = 1e-16
 Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 6/147 (4%)

Query: 3   KFKKVVVGGTFDRLHLGHKALLR-KAFEVGKIVYIGLTSDDMVKNKPYAEKILPYERRLK 61
           KF    +GGTFD +H GHK LL    F   + +  G+T D++++NK Y E I PY+ R +
Sbjct: 141 KFHVTALGGTFDHIHDGHKILLSVSTFITSQRLICGITCDELLQNKKYKELIEPYDTRCR 200

Query: 62  DLIEFLEV-NNFRRYRIIKINNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLRP 120
            + +F+++        ++ + +  G T ++  +E +VVS ET  GA  VN+ R E G+ P
Sbjct: 201 HVHQFIKLLKPDLSVELVPLRDVCGPTGKVPEIECLVVSRETVSGAETVNKTRIEKGMSP 260

Query: 121 LEIIVIPIIKSKLGD----KISSSLIR 143
           L + V+ ++  +  D    K+SS+ IR
Sbjct: 261 LAVHVVNVLGGREEDGWSEKLSSTEIR 287


>gb|AAD15511.1| (AC006439) hypothetical protein [Arabidopsis thaliana]
           Length = 176
           
 Score = 85.8 bits (209), Expect = 2e-16
 Identities = 55/145 (37%), Positives = 86/145 (58%), Gaps = 7/145 (4%)

Query: 4   FKKVVVGGTFDRLHLGHKALLRKAFEVGKI-VYIGLTSDDMVKNKPYAEKILPYERRLKD 62
           F  VV+GGTFDRLH GH+  L+ A E+ +  + +G+    M+  K +++ I P E R+++
Sbjct: 15  FGAVVLGGTFDRLHDGHRMFLKAAAELARDRIVVGVCDGPMLTKKQFSDMIQPIEERMRN 74

Query: 63  LIEFLEVNNFRRYRIIK---INNAIGFTTRIRSLEAIVVSEETYKGALLVNRAREEVGLR 119
           +  +  V + +   +++   I +  G +    +LEAIVVS+ET  G L VNR R E GL 
Sbjct: 75  VETY--VKSIKPELVVQAEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNRKRAERGLS 132

Query: 120 PLEIIVIPIIK-SKLGDKISSSLIR 143
            L+I V+ I+     G+KISSS +R
Sbjct: 133 QLKIEVVEIVSDGSSGNKISSSTLR 157


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.144    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53560865
Number of Sequences: 2977
Number of extensions: 2019325
Number of successful extensions: 4973
Number of sequences better than 1.0e-10: 9
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4962
Number of HSP's gapped (non-prelim): 9
length of query: 157
length of database: 189,106,746
effective HSP length: 54
effective length of query: 103
effective length of database: 156,788,448
effective search space: 16149210144
effective search space used: 16149210144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)