BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0951 (PAB0951) DE:Hypothetical protein
         (247 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75055 hypothetical protein PAB0951 - Pyrococcus abyssi (st...   501  e-141
pir||A71106 hypothetical protein PH0618 - Pyrococcus horikoshii ...   456  e-127

>pir||D75055 hypothetical protein PAB0951 - Pyrococcus abyssi (strain Orsay)
           >gi|5458850|emb|CAB50337.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 247
           
 Score =  501 bits (1276), Expect = e-141
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MEIVIPQKIYGDRSGFNKLDKKLKALLGDLEVKWKISITKKQWVKISLEGEDSEVSANLI 60
           MEIVIPQKIYGDRSGFNKLDKKLKALLGDLEVKWKISITKKQWVKISLEGEDSEVSANLI
Sbjct: 1   MEIVIPQKIYGDRSGFNKLDKKLKALLGDLEVKWKISITKKQWVKISLEGEDSEVSANLI 60

Query: 61  REEFGEIPYSLSNIKEGDVFIGRLIDLGKVGYGAYVDIGILKPRPKDALIPLYWLKRTFG 120
           REEFGEIPYSLSNIKEGDVFIGRLIDLGKVGYGAYVDIGILKPRPKDALIPLYWLKRTFG
Sbjct: 61  REEFGEIPYSLSNIKEGDVFIGRLIDLGKVGYGAYVDIGILKPRPKDALIPLYWLKRTFG 120

Query: 121 EKPVRQMIREFGWIDYLPVQVYVNKVEKLAQEIEVYLTEKWVKKIKGWTSDRYDKLFIVG 180
           EKPVRQMIREFGWIDYLPVQVYVNKVEKLAQEIEVYLTEKWVKKIKGWTSDRYDKLFIVG
Sbjct: 121 EKPVRQMIREFGWIDYLPVQVYVNKVEKLAQEIEVYLTEKWVKKIKGWTSDRYDKLFIVG 180

Query: 181 TISENIERALVETGHSRDVRRIEELGLMETMLILKRGTHAPGIIKEIGPYIKPAKIGAIK 240
           TISENIERALVETGHSRDVRRIEELGLMETMLILKRGTHAPGIIKEIGPYIKPAKIGAIK
Sbjct: 181 TISENIERALVETGHSRDVRRIEELGLMETMLILKRGTHAPGIIKEIGPYIKPAKIGAIK 240

Query: 241 FPREEEK 247
           FPREEEK
Sbjct: 241 FPREEEK 247


>pir||A71106 hypothetical protein PH0618 - Pyrococcus horikoshii
           >gi|3257024|dbj|BAA29707.1| (AP000003) 248aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 248
           
 Score =  456 bits (1161), Expect = e-127
 Identities = 215/247 (87%), Positives = 236/247 (95%)

Query: 1   MEIVIPQKIYGDRSGFNKLDKKLKALLGDLEVKWKISITKKQWVKISLEGEDSEVSANLI 60
           ME++IPQKIYGDRSGF+KL+KKLK+LLGDL+VKWKIS+TKKQWVKI +EGEDSE+S NLI
Sbjct: 1   MEVIIPQKIYGDRSGFDKLNKKLKSLLGDLDVKWKISVTKKQWVKIQVEGEDSEISTNLI 60

Query: 61  REEFGEIPYSLSNIKEGDVFIGRLIDLGKVGYGAYVDIGILKPRPKDALIPLYWLKRTFG 120
           REEFGEIPYSLS + EGDV +GR I+LGKVGYGAYVDIGIL PRPKDAL+PLYWLKRTFG
Sbjct: 61  REEFGEIPYSLSKVNEGDVLVGRFIELGKVGYGAYVDIGILSPRPKDALLPLYWLKRTFG 120

Query: 121 EKPVRQMIREFGWIDYLPVQVYVNKVEKLAQEIEVYLTEKWVKKIKGWTSDRYDKLFIVG 180
           EKPVRQMIREFGW+DYLPV+V+VNKVEKLAQEIEVYLT++WVKKIKGWTSD +DKLFIVG
Sbjct: 121 EKPVRQMIREFGWVDYLPVEVFVNKVEKLAQEIEVYLTDRWVKKIKGWTSDNHDKLFIVG 180

Query: 181 TISENIERALVETGHSRDVRRIEELGLMETMLILKRGTHAPGIIKEIGPYIKPAKIGAIK 240
           TISENIERALVETGHSRDV+RIEELGLMETMLILKRGTHAPGIIKEIGPYI+ AKIGAIK
Sbjct: 181 TISENIERALVETGHSRDVKRIEELGLMETMLILKRGTHAPGIIKEIGPYIRSAKIGAIK 240

Query: 241 FPREEEK 247
           FP EE K
Sbjct: 241 FPHEEGK 247


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.142    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95788289
Number of Sequences: 2977
Number of extensions: 4051978
Number of successful extensions: 8878
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8876
Number of HSP's gapped (non-prelim): 2
length of query: 247
length of database: 189,106,746
effective HSP length: 53
effective length of query: 194
effective length of database: 157,386,935
effective search space: 30533065390
effective search space used: 30533065390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)