BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0953 (PAB0953) DE:Hypothetical protein
         (333 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75055 hypothetical protein PAB0953 - Pyrococcus abyssi (st...   656  0.0
sp|O58348|Y614_PYRHO HYPOTHETICAL PROTEIN PH0614 PRECURSOR >gi|7...   542  e-153

>pir||G75055 hypothetical protein PAB0953 - Pyrococcus abyssi (strain Orsay)
           >gi|5458853|emb|CAB50340.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 333
           
 Score =  656 bits (1675), Expect = 0.0
 Identities = 333/333 (100%), Positives = 333/333 (100%)

Query: 1   MSRSFMIILTIMLIALSLGEVLAAENGYDLIIVRNDDLIDYLIALPYSHLLDIPILPVNP 60
           MSRSFMIILTIMLIALSLGEVLAAENGYDLIIVRNDDLIDYLIALPYSHLLDIPILPVNP
Sbjct: 1   MSRSFMIILTIMLIALSLGEVLAAENGYDLIIVRNDDLIDYLIALPYSHLLDIPILPVNP 60

Query: 61  KELDDVTKAQLYSYIQLGRDKILIIGNNNAVSLNVEKELEDMGFKVTRIGGADRTETAEK 120
           KELDDVTKAQLYSYIQLGRDKILIIGNNNAVSLNVEKELEDMGFKVTRIGGADRTETAEK
Sbjct: 61  KELDDVTKAQLYSYIQLGRDKILIIGNNNAVSLNVEKELEDMGFKVTRIGGADRTETAEK 120

Query: 121 LALHFYPNGSKLVILASAWDYGSTLAASEFAMEYKCPILLTWENQLSPSALEGIKKLNPK 180
           LALHFYPNGSKLVILASAWDYGSTLAASEFAMEYKCPILLTWENQLSPSALEGIKKLNPK
Sbjct: 121 LALHFYPNGSKLVILASAWDYGSTLAASEFAMEYKCPILLTWENQLSPSALEGIKKLNPK 180

Query: 181 IVILVGFGINETVEKTIEDMGYETYWIGRDIEPPPIETTTTTTPNQTSSSKSFFLGVLVT 240
           IVILVGFGINETVEKTIEDMGYETYWIGRDIEPPPIETTTTTTPNQTSSSKSFFLGVLVT
Sbjct: 181 IVILVGFGINETVEKTIEDMGYETYWIGRDIEPPPIETTTTTTPNQTSSSKSFFLGVLVT 240

Query: 241 LMILSPVIVYLWKKREERRSQFLEQFSEKEIEVLRAIIENGGEIKQEELPKIVGYSRPTI 300
           LMILSPVIVYLWKKREERRSQFLEQFSEKEIEVLRAIIENGGEIKQEELPKIVGYSRPTI
Sbjct: 241 LMILSPVIVYLWKKREERRSQFLEQFSEKEIEVLRAIIENGGEIKQEELPKIVGYSRPTI 300

Query: 301 SRIIQDLEKKGIVEREKSGKTFIVRVIKKIKLD 333
           SRIIQDLEKKGIVEREKSGKTFIVRVIKKIKLD
Sbjct: 301 SRIIQDLEKKGIVEREKSGKTFIVRVIKKIKLD 333


>sp|O58348|Y614_PYRHO HYPOTHETICAL PROTEIN PH0614 PRECURSOR >gi|7518745|pir||E71105
           hypothetical protein PH0614 - Pyrococcus horikoshii
           >gi|3257020|dbj|BAA29703.1| (AP000003) 332aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 332
           
 Score =  542 bits (1382), Expect = e-153
 Identities = 267/333 (80%), Positives = 303/333 (90%), Gaps = 1/333 (0%)

Query: 1   MSRSFMIILTIMLIALSLGEVLAAENGYDLIIVRNDDLIDYLIALPYSHLLDIPILPVNP 60
           M R   +I+ ++LI  +   VLA  + YDLIIVRNDDLIDYLI+LPYSHL++ PILPVNP
Sbjct: 1   MKRIPSLIIGLLLILATWHSVLAINDNYDLIIVRNDDLIDYLISLPYSHLINAPILPVNP 60

Query: 61  KELDDVTKAQLYSYIQLGRDKILIIGNNNAVSLNVEKELEDMGFKVTRIGGADRTETAEK 120
           KELD VTKAQLYSYIQLGRDK+LIIGN NAVSL+VEKEL DMGF VTRIGGADR ETAEK
Sbjct: 61  KELDPVTKAQLYSYIQLGRDKVLIIGNTNAVSLDVEKELRDMGFSVTRIGGADRAETAEK 120

Query: 121 LALHFYPNGSKLVILASAWDYGSTLAASEFAMEYKCPILLTWENQLSPSALEGIKKLNPK 180
           LALHFY NGSK+VILASAWDYGSTLAA+EFAMEYKCPILLTWENQLSPSAL GI+KLN K
Sbjct: 121 LALHFYQNGSKVVILASAWDYGSTLAAAEFAMEYKCPILLTWENQLSPSALRGIEKLNAK 180

Query: 181 IVILVGFGINETVEKTIEDMGYETYWIGRDIEPPPIETTTTTTPNQTSSSKSFFLGVLVT 240
           IVILVGFGINET+EKT+E MGYETYWIGRDIEPPPIETTT++ P Q+S SKSFFLG++VT
Sbjct: 181 IVILVGFGINETIEKTLEGMGYETYWIGRDIEPPPIETTTSSPP-QSSGSKSFFLGMIVT 239

Query: 241 LMILSPVIVYLWKKREERRSQFLEQFSEKEIEVLRAIIENGGEIKQEELPKIVGYSRPTI 300
           L+IL+PVI+YLW++R ER S+FLEQF+EKE+ VL+AI+E GGE+KQE+LP+IVGYSRPTI
Sbjct: 240 LIILAPVILYLWRRRSERMSEFLEQFNEKELAVLKAIMERGGEVKQEDLPRIVGYSRPTI 299

Query: 301 SRIIQDLEKKGIVEREKSGKTFIVRVIKKIKLD 333
           SRI+QDLEKKGIVEREKSGKTFIVRVIKKIK+D
Sbjct: 300 SRIVQDLEKKGIVEREKSGKTFIVRVIKKIKID 332


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122554758
Number of Sequences: 2977
Number of extensions: 5232339
Number of successful extensions: 19091
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19083
Number of HSP's gapped (non-prelim): 2
length of query: 333
length of database: 189,106,746
effective HSP length: 58
effective length of query: 275
effective length of database: 154,394,500
effective search space: 42458487500
effective search space used: 42458487500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)