BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0954 (minD-2) DE:cell division inhibitor (minD-2)
(245 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75056 cell division inhibitor (mind-2) PAB0954 - Pyrococcu... 482 e-135
pir||C71105 probable cell division inhibitor MinD - Pyrococcus h... 452 e-126
pir||F75175 cell division inhibitor (mind-1) PAB1983 - Pyrococcu... 215 5e-55
gi|11498303 cell division inhibitor (minD-1) [Archaeoglobus fulg... 198 6e-50
sp|Q57967|Y547_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0547 >gi... 197 1e-49
pir||B69113 cell division inhibitor - Methanobacterium thermoaut... 187 8e-47
pir||H71038 probable cell division inhibitor - Pyrococcus horiko... 175 6e-43
sp|Q57633|Y169_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0169 >gi... 172 4e-42
gb|AAG19374.1| (AE005032) cell division inhibitor; MinD1 [Haloba... 151 6e-36
gi|11467635 inhibition of cell division factor [Guillardia theta... 136 3e-31
sp|Q55900|MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 135 5e-31
pir||F71191 hypothetical protein PH1806 - Pyrococcus horikoshii ... 130 2e-29
pir||H75150 cell division inhibitor (mind-3) PAB2105 - Pyrococcu... 127 1e-28
gb|AAG20269.1| (AE005101) cell division inhibitor; MinD2 [Haloba... 125 5e-28
sp|O25098|MIND_HELPY SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 124 8e-28
dbj|BAB06746.1| (AP001517) septum site-determining protein [Baci... 124 1e-27
gi|7524873 cell division inhibitor MinD [Chlorella vulgaris] >gi... 124 1e-27
dbj|BAA90261.1| (AB030278) MinD [Arabidopsis thaliana] >gi|97582... 123 1e-27
sp|Q9ZMA8|MIND_HELPJ SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 123 1e-27
pir||D75478 septum site-determining protein - Deinococcus radiod... 123 2e-27
dbj|BAA90628.1| (AP001129) Similar to Chlorella vulgaris C-27 ch... 122 5e-27
sp|Q9X2I3|MIND_THEMA SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 121 7e-27
gi|11466429 septum-site determining protein [Mesostigma viride] ... 119 4e-26
sp|Q01464|MIND_BACSU SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 118 5e-26
sp|P18197|MIND_ECOLI SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 118 6e-26
gi|11467859 septum-site determining protein [Nephroselmis olivac... 118 6e-26
pir||F70375 cell division inhibitor (septum placement) minD2 - A... 114 9e-25
emb|CAB53105.1| (AJ245645) cell division inhibitor MinD [Prototh... 114 1e-24
pir||C82136 septum site-determining protein MinD VC1960 [importe... 113 2e-24
pir||C81230 septum site-determining protein MinD NMB0171 [import... 110 2e-23
sp|P57411|MIND_BUCAI SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 109 3e-23
pir||F83239 cell division inhibitor MinD PA3244 [imported] - Pse... 109 3e-23
gi|11499521 cell division inhibitor (minD-2) [Archaeoglobus fulg... 107 1e-22
pir||C82695 septum site-determining protein XF1321 [imported] - ... 106 3e-22
dbj|BAB07777.1| (AP001520) centromere-like function involved in ... 105 6e-22
emb|CAC06097.1| (AJ010494) ParA protein [Listeria monocytogenes] 104 1e-21
sp|P37522|SOJ_BACSU SOJ PROTEIN >gi|2127177|pir||I40444 Spo0A ac... 103 2e-21
gb|AAF33831.1|AF226282_5 (AF226282) hypothetical flagellar biosy... 102 4e-21
gb|AAA85593.1| (U43739) YlxH [Borrelia burgdorferi] 98 8e-20
pir||E70133 ATP-binding protein (ylxH-1) homolog - Lyme disease ... 98 8e-20
gb|AAD19734.1| (AF124349) ATP-binding protein [Zymomonas mobilis] 98 1e-19
pir||B75038 soj protein homolog PAB0852 - Pyrococcus abyssi (str... 98 1e-19
sp|O05189|PARA_CAUCR CHROMOSOME PARTITIONING PROTEIN PARA >gi|19... 97 2e-19
pir||B71346 probable SpoOJ regulator (soj) - syphilis spirochete... 96 3e-19
pir||B82950 chromosome partitioning protein Soj PA5563 [imported... 96 4e-19
sp|P31856|YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN GIDB-UNCI I... 95 7e-19
pir||B71714 soj protein (soj) RP058 - Rickettsia prowazekii >gi|... 95 7e-19
gb|AAC62540.2| (AF052586) MotR [Pseudomonas aeruginosa] 95 9e-19
pir||B83463 flagellar synthesis regulator FleN PA1454 [imported]... 95 9e-19
pir||E82035 ParA family protein VC2773 [imported] - Vibrio chole... 94 1e-18
pir||D81227 ParA family protein NMB0191 [imported] - Neisseria m... 94 1e-18
pir||A71125 probable SOJ protein - Pyrococcus horikoshii >gi|325... 92 4e-18
pir||C81999 parA family protein NMA0076 [imported] - Neisseria m... 92 4e-18
pir||D71290 probable ATP-binding protein (ylxH-1) - syphilis spi... 92 7e-18
sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|7446821|pir||S74379 ... 89 6e-17
pir||T36875 probable partitioning or sporulation protein - Strep... 88 8e-17
pir||C70504 hypothetical protein Rv1708 - Mycobacterium tubercul... 88 1e-16
pir||E71274 probable ATP-binding protein (ylxH-2) - syphilis spi... 87 2e-16
sp|P40742|YLXH_BACSU HYPOTHETICAL 33.2 KD PROTEIN IN FLHF-CHEB I... 86 4e-16
gb|AAB53135.1| (L39923) ORF278; hypothetical 30.3 Kd protein; si... 85 6e-16
gb|AAF16005.1|AF187159_5 (AF187159) ParA [Streptomyces coelicolo... 85 6e-16
pir||A72319 conserved hypothetical protein - Thermotoga maritima... 85 1e-15
pir||A82577 chromosome partitioning protein XF2282 [imported] - ... 85 1e-15
sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|2129169|pir... 84 1e-15
pir||G81980 hypothetical protein NMA0611 [imported] - Neisseria ... 84 1e-15
pir||F81036 Mrp/NBP35 family protein NMB1846 [imported] - Neisse... 84 2e-15
sp|Q57853|Y410_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0410 >gi... 83 2e-15
gi|10954513 SOJ protein [Methanococcus jannaschii] >gi|2496226|s... 83 3e-15
gb|AAC03484.1| (AF031590) Soj-like [Streptomyces coelicolor A3(2)] 83 4e-15
sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|7446831|pir||G70364 ... 83 4e-15
pir||H70404 cell division inhibitor (septum placement) minD1 - A... 83 4e-15
pir||T36573 probable partitioning or sporulation protein - Strep... 83 4e-15
gb|AAF32413.1| (AF069392) flagellar biosynthesis protein FlhG [V... 82 6e-15
pir||C81422 probable ATP-binding protein Cj0063c [imported] - Ca... 82 8e-15
pir||S72958 hypothetical protein u0247b - Mycobacterium leprae >... 81 1e-14
sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|7446819|pir... 81 1e-14
pir||D81426 parA family protein Cj0100 [imported] - Campylobacte... 81 1e-14
pir||F70851 probable parB protein - Mycobacterium tuberculosis (... 81 1e-14
dbj|BAB06155.1| (AP001515) unknown conserved protein [Bacillus h... 81 1e-14
sp|Q58334|Y924_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0924 >gi... 80 2e-14
sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|7446833|pir||H70508 ... 80 2e-14
sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|7446823|pir||G64545 ... 80 3e-14
pir||H71962 hypothetical protein jhp0193 - Helicobacter pylori (... 79 4e-14
pir||E82123 MinD-related protein VC2067 [imported] - Vibrio chol... 79 4e-14
pir||E70190 ATP-binding protein (ylxH-3) homolog - Lyme disease ... 79 5e-14
pir||D75570 chromosome partitioning ATPase Soj - Deinococcus rad... 78 9e-14
pir||E72233 conserved hypothetical protein - Thermotoga maritima... 78 1e-13
gi|10957476 chromosome partitioning ATPase, putative, ParA famil... 78 1e-13
pir||E82249 mrp protein VC1037 [imported] - Vibrio cholerae (gro... 78 1e-13
pir||B81656 ParA family protein TC0871 [imported] - Chlamydia mu... 77 2e-13
pir||G39999 hypothetical protein 7 - Chlamydophila psittaci 76 3e-13
gi|10957096 hypothetical protein [Chlamydophila psittaci] >gi|97... 76 3e-13
emb|CAB08277.1| (Z95117) hypothetical protein MLC1351.06c [Mycob... 76 3e-13
gb|AAG10431.1| (AF251019) minD [Tagetes erecta] 76 4e-13
pir||B64649 ATP-binding protein - Helicobacter pylori (strain 26... 76 5e-13
pir||D81256 probable ATP/GTP-binding protein (mrp protein homolo... 76 5e-13
pir||G82122 ParA family protein VC2061 [imported] - Vibrio chole... 76 5e-13
pir||D71938 hypothetical protein jhp0390 - Helicobacter pylori (... 75 6e-13
pir||D75131 mrp-family probable nucleotide-binding protein PAB17... 75 6e-13
pir||G71495 probable chromosome partitioning ATPase-chltr plasmi... 75 8e-13
sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|11279019|pir||T45199... 75 1e-12
gb|AAF00142.1|AF149810_1 (AF149810) cell division inhibitor MinD... 75 1e-12
emb|CAA57590.1| (X82078) ORF7 [Chlamydophila pneumoniae] 74 1e-12
pir||H70144 ATP-binding protein (ylxH-2) homolog - Lyme disease ... 74 1e-12
pir||S11948 mrp protein - Escherichia coli >gi|42017|emb|CAA3931... 74 2e-12
sp|P21590|MRP_ECOLI MRP PROTEIN >gi|7446818|pir||H64978 probable... 74 2e-12
gb|AAC78666.1| (AF094575) Cps19aD [Streptococcus pneumoniae] 74 2e-12
pir||A69096 nitrogenase reductase related protein - Methanobacte... 73 3e-12
dbj|BAA91471.1| (AK001023) unnamed protein product [Homo sapiens] 73 3e-12
emb|CAC01353.1| (AL390975) putative ATP-binding protein [Strepto... 73 3e-12
sp|P45135|MRP_HAEIN MRP PROTEIN HOMOLOG >gi|1075171|pir||A64114 ... 72 7e-12
gi|6912540 nucleotide binding protein 2 (E.coli MinD like) [Homo... 72 7e-12
pir||F75448 mrp protein - Deinococcus radiodurans (strain R1) >g... 72 7e-12
pir||T50033 capsular polysaccharide synthesis protein 14D [valid... 71 9e-12
emb|CAB43607.1| (AJ239004) cap8D [Streptococcus pneumoniae] 71 9e-12
pir||F70595 hypothetical protein Rv3213c - Mycobacterium tubercu... 71 1e-11
pir||C64662 regulatory protein spo0J - Helicobacter pylori (stra... 71 2e-11
gi|10954839 Probable repA gene [Agrobacterium tumefaciens] >gi|2... 71 2e-11
gb|AAC38747.1| (AF030373) chain length regulator/exporter [Strep... 71 2e-11
emb|CAA07397.1| (AJ006986) cap33fD [Streptococcus pneumoniae] 71 2e-11
pir||F72034 ParA chromosome partitioning ATPasen CP1066 [importe... 71 2e-11
emb|CAA61616.1| (X89447) repA protein [Rhizobium leguminosarum] 70 2e-11
emb|CAB05937.1| (Z83335) unknown [Streptococcus pneumoniae] 70 2e-11
gi|10955106 repA [Agrobacterium tumefaciens] >gi|95114|pir||A328... 70 3e-11
gb|AAD10173.1| (AF026471) Cps2D [Streptococcus pneumoniae] 70 3e-11
gb|AAF32419.1| (AF069392) SOJ-like protein [Vibrio parahaemolyti... 70 3e-11
gb|AAG19516.1| (AE005043) Mrp protein homolog; Mrp [Halobacteriu... 70 3e-11
emb|CAB59289.1| (AJ131984) cap37D [Streptococcus pneumoniae] 68 8e-11
>pir||A75056 cell division inhibitor (mind-2) PAB0954 - Pyrococcus abyssi
(strain Orsay) >gi|5458855|emb|CAB50342.1| (AJ248287)
cell division inhibitor (minD-2) [Pyrococcus abyssi]
Length = 245
Score = 482 bits (1227), Expect = e-135
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH
Sbjct: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP 120
DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP
Sbjct: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP 120
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDI 180
AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDI
Sbjct: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDI 180
Query: 181 PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGIK 240
PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGIK
Sbjct: 181 PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGIK 240
Query: 241 AKVMY 245
AKVMY
Sbjct: 241 AKVMY 245
>pir||C71105 probable cell division inhibitor MinD - Pyrococcus horikoshii
>gi|3257018|dbj|BAA29701.1| (AP000003) 245aa long
hypothetical cell division inhibitor MinD [Pyrococcus
horikoshii]
Length = 245
Score = 452 bits (1150), Expect = e-126
Identities = 222/245 (90%), Positives = 241/245 (97%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
M RIISIVSGKGGTGKTTVTANLSVALGEMG+KVLAVDGDLTMANLSLVLGVDDV++TLH
Sbjct: 1 MTRIISIVSGKGGTGKTTVTANLSVALGEMGRKVLAVDGDLTMANLSLVLGVDDVNITLH 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP 120
DVLAG+AKL+DAIYMTQF+NVY+LPGAVDWEHV+KADPRKLPEVIKSLKG YDFILIDCP
Sbjct: 61 DVLAGDAKLEDAIYMTQFENVYILPGAVDWEHVIKADPRKLPEVIKSLKGKYDFILIDCP 120
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDI 180
AGLQLDAMSAMLSGEEA+LVTNPEISCLTDTMKVG+VL+KAGLAILGFILNRYGR+E DI
Sbjct: 121 AGLQLDAMSAMLSGEEAILVTNPEISCLTDTMKVGMVLKKAGLAILGFILNRYGRSERDI 180
Query: 181 PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGIK 240
PP+AAQDVMDVPLLAVIPEDP IREGTLEGIPAVKYKPES+GA+AF+KLA+EV+KLAGIK
Sbjct: 181 PPEAAQDVMDVPLLAVIPEDPVIREGTLEGIPAVKYKPESKGAQAFIKLAEEVDKLAGIK 240
Query: 241 AKVMY 245
AK+MY
Sbjct: 241 AKIMY 245
>pir||F75175 cell division inhibitor (mind-1) PAB1983 - Pyrococcus abyssi
(strain Orsay) >gi|5457995|emb|CAB49485.1| (AJ248284)
cell division inhibitor (minD-1) [Pyrococcus abyssi]
Length = 260
Score = 215 bits (541), Expect = 5e-55
Identities = 112/240 (46%), Positives = 160/240 (66%), Gaps = 4/240 (1%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
R I SGKGGTGKTT AN+ VAL + GK V+ +D D+TMANLSL+LG++D+ VTLHDV
Sbjct: 4 RSIVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDV 63
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCPAG 122
LAGEA L+DAIY V V+PG + E + KA +L ++I+ + DFILID PAG
Sbjct: 64 LAGEADLKDAIYEGPA-GVKVIPGGLSLEKIKKARAERLRDLIREISQMGDFILIDAPAG 122
Query: 123 LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDIPP 182
L+L +++A+L G+E ++VTNPEI+ +TD++K +V K G LG ILNR + ++
Sbjct: 123 LELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTELSR 182
Query: 183 DAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGIKAK 242
+ + +++VP+L +PEDP ++ + G+P V P S A A+ ++A KLAGIK K
Sbjct: 183 EEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIA---AKLAGIKWK 239
>gi|11498303 cell division inhibitor (minD-1) [Archaeoglobus fulgidus]
>gi|7443738|pir||H69336 cell division inhibitor (minD-1)
homolog - Archaeoglobus fulgidus
>gi|2649916|gb|AAB90541.1| (AE001056) cell division
inhibitor (minD-1) [Archaeoglobus fulgidus]
Length = 263
Score = 198 bits (498), Expect = 6e-50
Identities = 104/243 (42%), Positives = 152/243 (61%), Gaps = 3/243 (1%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
M R I++ SGKGGTGKTT+TANL VAL ++G V VD D+TMANL L+LG++ + VTL
Sbjct: 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQ 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP 120
+VLAGEA++ +AIY+ V V+P V E + KA+P KL +V+ + D +L+D P
Sbjct: 61 NVLAGEARIDEAIYVGP-GGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAP 119
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDI 180
AGL+ A+ A+ + +E LLV NPEIS +TD +K IV + G +LG ++NR ++
Sbjct: 120 AGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIEM 179
Query: 181 PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGIK 240
+ + +++ ++ +IPEDP +R G P V P S A+A V+LA + G K
Sbjct: 180 AKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIVELANYI--AGGAK 237
Query: 241 AKV 243
KV
Sbjct: 238 KKV 240
>sp|Q57967|Y547_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0547 >gi|2144955|pir||C64368
cell division inhibitor MinD homolog MJ0547 -
Methanococcus jannaschii >gi|1591252|gb|AAB98539.1|
(U67504) cell division inhibitor minD [Methanococcus
jannaschii]
Length = 264
Score = 197 bits (495), Expect = 1e-49
Identities = 100/240 (41%), Positives = 156/240 (64%), Gaps = 4/240 (1%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
MA I+I SGKGGTGKTT++ANL+VAL + GKKV +D D+ MANL L++G++ VTL+
Sbjct: 5 MAIAIAIASGKGGTGKTTISANLAVALAKFGKKVAVLDADIAMANLELIMGLEGKPVTLN 64
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP 120
DVLAG+A ++DAIY + V V+P V E +A P KL EV+K++ + ++IDCP
Sbjct: 65 DVLAGKADIKDAIYEGP-EGVLVIPAGVSLEKFRRAKPEKLEEVLKAIHDLVEILIIDCP 123
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDI 180
AG+ + + A+ S + ++V NPEIS ++D +K+ + ++ G I+G I+NR ++
Sbjct: 124 AGIGKETLIAISSADGLIVVVNPEISSISDALKIIAITKRLGTDIIGAIVNRVSNESTEL 183
Query: 181 PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGIK 240
A + +++VP++ V+PEDP +R+ G P V P+S A+A +++A KL G K
Sbjct: 184 GVKAIETILEVPVIGVVPEDPHVRKAAAFGTPLVIMYPDSPAAQAIMEIA---AKLIGAK 240
>pir||B69113 cell division inhibitor - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622975|gb|AAB86306.1| (AE000937)
cell division inhibitor [Methanobacterium
thermoautotrophicum]
Length = 259
Score = 187 bits (471), Expect = 8e-47
Identities = 93/233 (39%), Positives = 147/233 (62%), Gaps = 1/233 (0%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
M R+I++ SGKGG GKTT+TANL VAL G++V+ +D D+ MANL L+LG++ VTLH
Sbjct: 1 MTRVITVASGKGGVGKTTITANLGVALSTYGERVVVLDADIAMANLELILGMEGKSVTLH 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP 120
DVLAG A ++DA+Y + V V+P + E + +L + + L D D +LID P
Sbjct: 61 DVLAGNASIEDAVYEGP-NGVRVVPAGISLEGLRNVKLDRLEDALAYLIEDTDILLIDAP 119
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDI 180
AGL+ DA++A+ + +E LLVT PE+ ++D +K IV K + I+G ++NR + +
Sbjct: 120 AGLEKDAVAALAAADELLLVTTPEVPSISDALKTKIVASKLDINIIGVVINREQYDKTFL 179
Query: 181 PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEV 233
+ + +++VP++AVIP+DP + G P V P+S + A ++LA ++
Sbjct: 180 SVEEVETILEVPVIAVIPDDPEVSRAAAFGEPIVIKNPKSPASNALMELAADL 232
>pir||H71038 probable cell division inhibitor - Pyrococcus horikoshii
>gi|3258029|dbj|BAA30712.1| (AP000006) 217aa long
hypothetical cell division inhibitor [Pyrococcus
horikoshii]
Length = 217
Score = 175 bits (438), Expect = 6e-43
Identities = 92/200 (46%), Positives = 135/200 (67%), Gaps = 4/200 (2%)
Query: 43 MANLSLVLGVDDVDVTLHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLP 102
MANLSL+LG++D+ VTLHDVLAGEA+L+DAIY V V+PG + E V KA P +L
Sbjct: 1 MANLSLILGMEDIPVTLHDVLAGEAELKDAIYEGPA-GVKVIPGGLSLEKVKKARPERLR 59
Query: 103 EVIKSLKGDYDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAG 162
E+I+ + DFILID PAGL+L +++A+L G+E ++VTNPEI+ +TD++K +V K G
Sbjct: 60 ELIREISQMGDFILIDAPAGLELTSVTALLIGKELIIVTNPEIAAITDSLKTKLVAEKLG 119
Query: 163 LAILGFILNRYGRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEG 222
LG ILNR + ++ + + +++VP+L ++PEDP ++ + G+P V P S
Sbjct: 120 TLPLGAILNRVTNEKTELSREEIEALLEVPVLGIVPEDPEVKRASAYGVPLVVKNPTSPA 179
Query: 223 AKAFVKLAQEVEKLAGIKAK 242
A A+ ++A KLAGIK K
Sbjct: 180 AIAYKQIA---AKLAGIKWK 196
>sp|Q57633|Y169_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0169 >gi|2144954|pir||B64321
cell division inhibitor MinD homolog MJ0169 -
Methanococcus jannaschii >gi|1590922|gb|AAB98154.1|
(U67474) cell division inhibitor minD [Methanococcus
jannaschii]
Length = 263
Score = 172 bits (431), Expect = 4e-42
Identities = 86/227 (37%), Positives = 145/227 (62%), Gaps = 1/227 (0%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II+I SGKGG GKTT +A+L+VAL ++GKKVLA+DGD++MANL ++ ++ +LH+VL
Sbjct: 5 IITIASGKGGVGKTTTSASLAVALAKLGKKVLAIDGDISMANLGILFNMEKKKPSLHEVL 64
Query: 64 AGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCPAGL 123
+ EA ++DAIY + VYVLP ++ E K+D LP+V+ + D+D+++ID PAGL
Sbjct: 65 SEEADVRDAIYKHK-TGVYVLPTSLSLEGYKKSDIDLLPDVVNEVADDFDYVIIDAPAGL 123
Query: 124 QLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDIPPD 183
+ + + ++ LLV PE+ + D +++ AG ++G +LNR GR ++ D
Sbjct: 124 NREMATHLAIADKLLLVVTPEMFSIIDAVRLKESAEMAGTPLMGVVLNRVGRDFGEMGRD 183
Query: 184 AAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLA 230
+ ++ +L +PED +R L+ + ++Y+ S ++A++KLA
Sbjct: 184 EIEMLIKGKVLVEVPEDENVRSAALKKMSVIEYRKNSPASQAYMKLA 230
>gb|AAG19374.1| (AE005032) cell division inhibitor; MinD1 [Halobacterium sp. NRC-1]
Length = 323
Score = 151 bits (378), Expect = 6e-36
Identities = 91/237 (38%), Positives = 132/237 (55%), Gaps = 4/237 (1%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
+ ++ SGKGG GK+T TANL VAL + G +V VD DL MANL+ + G+ + DVTLHDVL
Sbjct: 10 VFAVASGKGGVGKSTTTANLGVALADEGFEVALVDVDLGMANLAGLFGLTE-DVTLHDVL 68
Query: 64 AGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCPAGL 123
+G+A DA Y V V+PG+ D E +AD + L V+ L+ D+D +L+D AGL
Sbjct: 69 SGDASPADAAYDAH--GVTVVPGSTDLEQFAEADAKSLHRVVTRLRADHDVVLLDAGAGL 126
Query: 124 QLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTE-NDIPP 182
D AM + LLVT E++ LTD K G ++ K ++G + R G +D+
Sbjct: 127 SYDIAMAMSVADGVLLVTTAELNSLTDATKTGQLVSKLDKPVVGAVFTRTGDGGFDDVEG 186
Query: 183 DAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGI 239
AA + +P D A++ +G P V PES A+A+ +LA + G+
Sbjct: 187 IAAALGTTDAVTVSVPHDDAVKLAVRKGHPVVDLTPESPAARAYDRLAASLADSIGM 243
>gi|11467635 inhibition of cell division factor [Guillardia theta]
>gi|6016572|sp|O78436|MIND_GUITH PUTATIVE SEPTUM
SITE-DETERMINING PROTEIN MIND >gi|3602960|gb|AAC35621.1|
(AF041468) inhibition of cell division factor
[Guillardia theta]
Length = 269
Score = 136 bits (338), Expect = 3e-31
Identities = 88/246 (35%), Positives = 137/246 (54%), Gaps = 10/246 (4%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
MARI+ I SGKGG GKTTVTANL +AL ++G + +D D+ + NL L+LG+++ V T
Sbjct: 1 MARIVVITSGKGGVGKTTVTANLGMALAQLGYRTALIDADIGLRNLDLLLGLENRVIYTA 60
Query: 60 HDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDC 119
+VL+GE +L+ A+ + VL A + ++ ++ L DYD++LIDC
Sbjct: 61 LEVLSGECRLEQALIKDKRQPNLVLLPAAQNRNKDSVTEEQMKFLVNLLVNDYDYLLIDC 120
Query: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGR---T 176
PAG++ +A+ +EA++VT PEI+ + D +V +L G+ + ++NR
Sbjct: 121 PAGIETGFHNAIGPAQEAIVVTTPEIAAVRDADRVIGLLEANGIKQIKLLVNRLRPQMVK 180
Query: 177 ENDIPPDA-AQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLA----- 230
ND+ A ++++ +PL+ VIPED + T G P V K S AF A
Sbjct: 181 ANDMMSVADVREILAIPLIGVIPEDECVIVSTNRGEPLVLEKNLSLPGLAFEHTACRLDG 240
Query: 231 QEVEKL 236
QE+E L
Sbjct: 241 QEIEFL 246
>sp|Q55900|MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443733|pir||S76970 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
>gi|1001783|dbj|BAA10662.1| (D64005) septum
site-determining protein MinD [Synechocystis sp.]
Length = 266
Score = 135 bits (336), Expect = 5e-31
Identities = 82/240 (34%), Positives = 133/240 (55%), Gaps = 7/240 (2%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
M RII + SGKGG GKTT TANL AL +GKKV+ +D D + NL L+LG++ + T
Sbjct: 1 MNRIIVVTSGKGGVGKTTTTANLGAALARLGKKVVLIDADFGLRNLDLLLGLEQRIVYTA 60
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID 118
DVLA E + A+ + N+ +LP A + + ++ +++ LK +D+I+ID
Sbjct: 61 IDVLADECTIDKALVKDKRLPNLVLLPAAQN-RSKDAINAEQMQSLVEQLKDKFDYIIID 119
Query: 119 CPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG---- 174
CPAG++ +A+ +EA++VT PE+S + D +V +L + + I+NR
Sbjct: 120 CPAGIEAGFRNAVAPAQEAIIVTTPEMSAVRDADRVIGLLEAEDIGKISLIVNRLRPEMV 179
Query: 175 RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVE 234
+ I + D++ VPL+ ++P+D I T +G P V + S AF +A+ +E
Sbjct: 180 QLNQMISVEDILDLLAVPLIGILPDDQKIIISTNKGEPLVMEEKLSVPGLAFQNIARRLE 239
>pir||F71191 hypothetical protein PH1806 - Pyrococcus horikoshii
>gi|3258242|dbj|BAA30925.1| (AP000007) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 130 bits (323), Expect = 2e-29
Identities = 82/241 (34%), Positives = 128/241 (53%), Gaps = 10/241 (4%)
Query: 5 ISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLA 64
+ +V+G+GG GKTT TANLS + G +VLA+DGDL + NL L +D+V TLH ++
Sbjct: 3 VIVVTGRGGAGKTTTTANLSTYFAQSGYRVLAIDGDLYLPNLGLHFALDNVKYTLHSIVK 62
Query: 65 G-EAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCPAGL 123
+ AIY + VYV+PG+ E V+ ++L ++I+ LK Y I +D P G+
Sbjct: 63 NPNMDPEWAIYRHEQTGVYVMPGSPRLEDVLGVSGQRLKDIIEHLKYKYPLIFVDSPTGI 122
Query: 124 QLDAMSAMLSGEEALLVTNPEISCL--TDTMKVGIVLRKAGLA-----ILGFILNRYGRT 176
D + A S ++V E S + +TM VL+ L +G ++N+
Sbjct: 123 PFDTLPAFESFNYQIIVVEVERSPIYSFETMVENEVLKLKALGDKFKLEVGVVINKVREA 182
Query: 177 EN--DIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVE 234
+ D + ++ + VP+L VIP D ++ E GIP + YKP S+ A AF + Q E
Sbjct: 183 ADVMDKIVEVIEEDIGVPVLGVIPFDDSVPESINIGIPVLVYKPRSDAALAFKEAGQLTE 242
Query: 235 K 235
+
Sbjct: 243 E 243
>pir||H75150 cell division inhibitor (mind-3) PAB2105 - Pyrococcus abyssi
(strain Orsay) >gi|5457797|emb|CAB49287.1| (AJ248284)
cell division inhibitor (minD-3) [Pyrococcus abyssi]
Length = 251
Score = 127 bits (316), Expect = 1e-28
Identities = 84/241 (34%), Positives = 129/241 (52%), Gaps = 11/241 (4%)
Query: 5 ISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLA 64
+ +V+G+GG GKTT TANLS + G +VLA+DGDL + NL L +D+V TLH ++
Sbjct: 3 VIVVTGRGGAGKTT-TANLSTYFAQAGYRVLAIDGDLYLPNLGLHFALDNVKYTLHSIVK 61
Query: 65 G-EAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCPAGL 123
+ AIY + VYV+PG+ E V+ ++L +VI++LK Y I +D P G+
Sbjct: 62 NPNMDPEWAIYRHEQTGVYVMPGSPRLEDVLGVSGQRLKDVIENLKYKYPVIFVDSPTGV 121
Query: 124 QLDAMSAMLSGEEALLVTNPEISCL--TDTMKVGIVLRKAGLA-----ILGFILNRYGRT 176
D + A S ++V E S + +TM VL+ L +G ++N+
Sbjct: 122 PFDTLPAFESFNYQIIVVEIERSPIYSFETMVENEVLKLKALGDRFKLDVGVVINKVREA 181
Query: 177 ENDIPP--DAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVE 234
+ I + ++ + VP+L VIP D A+ E GIP + YKP S+ A AF + Q E
Sbjct: 182 ADVIDKIVETIEEDIGVPVLGVIPFDDAVPESINVGIPVLVYKPRSDAALAFKEAGQLTE 241
Query: 235 K 235
+
Sbjct: 242 E 242
>gb|AAG20269.1| (AE005101) cell division inhibitor; MinD2 [Halobacterium sp. NRC-1]
Length = 305
Score = 125 bits (311), Expect = 5e-28
Identities = 77/234 (32%), Positives = 118/234 (49%), Gaps = 9/234 (3%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTLHD 61
R+ ++ SGKGG GKTT N++ + E + V+ VD DL MAN+ V+ D+ TLHD
Sbjct: 4 RVFAVASGKGGVGKTTTAVNVAAVMAEADRSVVLVDADLGMANVDHVVACDESATATLHD 63
Query: 62 VLAGEAKLQDAIYMTQ--FDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDC 119
VLA +A L DA FD V+ G +ADP LP+V +L+ YD +++D
Sbjct: 64 VLADDAALTDATAAAPAGFD---VIVGGTTITDFGRADPSALPDVAATLRDRYDCVIVDT 120
Query: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTEND 179
GL D + +E +LV+ + + L +T K ++ + G + G ++ R
Sbjct: 121 GGGLSHDTTVPLGLADETVLVSTRQTAALANTAKTRALVERVGGHVAGAVVTRVTDDAGG 180
Query: 180 IPP---DAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLA 230
DAA + +L +IPED + + G P V PES A+A+ +LA
Sbjct: 181 ADAGHGDAAAATLQTDILGLIPEDSRVADSERAGTPLVSLAPESPAAQAYRELA 234
>sp|O25098|MIND_HELPY SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443731|pir||C64561 cell division inhibitor minD -
Helicobacter pylori (strain 26695)
>gi|2313432|gb|AAD07400.1| (AE000551) cell division
inhibitor (minD) [Helicobacter pylori 26695]
Length = 268
Score = 124 bits (309), Expect = 8e-28
Identities = 79/246 (32%), Positives = 136/246 (55%), Gaps = 16/246 (6%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
MA +++I SGKGG GK+T TANL++ L E GKKV+AVD D+ + NL ++LG+++ + +
Sbjct: 1 MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDV 60
Query: 60 HDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDC 119
DV+ L A+ + A + D K+ +I +L+ D+D+ILID
Sbjct: 61 VDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDS 120
Query: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK-VGIVLRKAGLAILGFILNRYGRTEN 178
PAG++ A+L + AL+V PE+S L D+ + VGI+ K+ A G ++++ N
Sbjct: 121 PAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGMEVHKH-LIIN 179
Query: 179 DIPPDAAQD-----------VMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFV 227
+ P+ + ++ +PL+ +IPED I T +G P + + + E AKA+
Sbjct: 180 RLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVI--RTDCESAKAYQ 237
Query: 228 KLAQEV 233
++ + +
Sbjct: 238 RITRRI 243
>dbj|BAB06746.1| (AP001517) septum site-determining protein [Bacillus halodurans]
Length = 264
Score = 124 bits (308), Expect = 1e-27
Identities = 73/239 (30%), Positives = 135/239 (55%), Gaps = 8/239 (3%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
M I I SGKGG GKTT +AN+ AL GKKV VD D+ + NL +V+G+++ + L
Sbjct: 1 MGEAIVITSGKGGVGKTTTSANIGTALALSGKKVCLVDTDIGLRNLDVVMGLENRIIYDL 60
Query: 60 HDVLAGEAKLQDAIYMTQ-FDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID 118
DV+ G +L+ A+ + F+ + +LP A + P ++ E+++ LK +YD++LID
Sbjct: 61 VDVVEGRCRLKQALIKDKRFECLNLLPAA-QTKDKSAVTPEQMKEIVEELKQEYDYVLID 119
Query: 119 CPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG---- 174
CPAG++ +A+ ++A++VT PEIS + D ++ +L K + ++NR
Sbjct: 120 CPAGIEQGFKNAVAGADKAIVVTTPEISSVRDADRIIGLLEKEEVEAPRLVVNRIRGHMM 179
Query: 175 RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEV 233
+ + D ++ + LL ++ +D + + + +G P + P+S+ + A+ +A+ +
Sbjct: 180 KNGEMLDVDEIVSILAIELLGIVVDDENVIKFSNKGEP-IALHPDSKASVAYRNIARRI 237
>gi|7524873 cell division inhibitor MinD [Chlorella vulgaris]
>gi|3024135|sp|P56346|MIND_CHLVU PUTATIVE SEPTUM
SITE-DETERMINING PROTEIN MIND >gi|7443732|pir||T07303
cell division inhibitor - Chlorella vulgaris chloroplast
>gi|2224467|dbj|BAA57951.1| (AB001684) cell division
inhibitor MinD [Chlorella vulgaris]
Length = 282
Score = 124 bits (308), Expect = 1e-27
Identities = 78/241 (32%), Positives = 140/241 (57%), Gaps = 10/241 (4%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
+ R+I I SGKGG GKTT TANL +++ +G +V +D D+ + NL L+LG+++ V T
Sbjct: 15 LERVIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTA 74
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAVDWE--HVMKADPRKLPEVIKSLKGDYDFIL 116
D++ G+ +L A+ ++ N+ +L + + + +V + + + L + +K L + F+L
Sbjct: 75 MDIVEGQCRLDQALIRDKRWKNLALLAISKNRQKYNVTRKNMQNLIDSVKEL--GFQFVL 132
Query: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGR- 175
IDCPAG+ + ++A+ S +EA++VT PEI+ + D +V +L G+ + ++NR
Sbjct: 133 IDCPAGIDVGFINAIASAQEAVIVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 192
Query: 176 --TEND-IPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQE 232
+ND + Q+++ +PLL IPED ++ T +G P V K + AF A+
Sbjct: 193 MIQKNDMMSVRDVQEMLGIPLLGAIPEDTSVIISTNKGEPLVLNKKLTLSGIAFENAARR 252
Query: 233 V 233
+
Sbjct: 253 L 253
>dbj|BAA90261.1| (AB030278) MinD [Arabidopsis thaliana] >gi|9758226|dbj|BAB08725.1|
(AB009056) septum site-determining MinD [Arabidopsis
thaliana]
Length = 326
Score = 123 bits (307), Expect = 1e-27
Identities = 85/250 (34%), Positives = 137/250 (54%), Gaps = 11/250 (4%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTLHD 61
RI+ I SGKGG GKTT TAN+ ++L G V+A+D DL + NL L+LG+++ V+ T +
Sbjct: 59 RIVVITSGKGGVGKTTTTANVGLSLARYGFSVVAIDADLGLRNLDLLLGLENRVNYTCVE 118
Query: 62 VLAGEAKLQDAIYM-TQFDNVYVLPGAVDWEHV-MKADPRKLPEVIKSLK----GDYDFI 115
V+ G+ +L A+ ++ N +L + + M + L ++ +LK G DFI
Sbjct: 119 VINGDCRLDQALVRDKRWSNFELLCISKPRSKLPMGFGGKALEWLVDALKTRPEGSPDFI 178
Query: 116 LIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG- 174
+IDCPAG+ ++A+ EA+LVT P+I+ L D +V +L G+ + I+NR
Sbjct: 179 IIDCPAGIDAGFITAITPANEAVLVTTPDITALRDADRVTGLLECDGIRDIKMIVNRVRT 238
Query: 175 ---RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQ 231
+ E+ + Q+++ + LL VIPED + T G P V KP + AF + A
Sbjct: 239 DMIKGEDMMSVLDVQEMLGLSLLGVIPEDSEVIRSTNRGFPLVLNKPPTLAGLAFEQAAW 298
Query: 232 EVEKLAGIKA 241
+ + +KA
Sbjct: 299 RLVEQDSMKA 308
>sp|Q9ZMA8|MIND_HELPJ SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443730|pir||B71945 cell division inhibitor -
Helicobacter pylori (strain J99)
>gi|4154852|gb|AAD05905.1| (AE001468) cell division
inhibitor [Helicobacter pylori J99]
Length = 268
Score = 123 bits (307), Expect = 1e-27
Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 14/245 (5%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
MA +++I SGKGG GK+T TANL++ L E GKKV+AVD D+ + NL ++LG+++ + +
Sbjct: 1 MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDV 60
Query: 60 HDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDC 119
DV+ L A+ + A + D K+ +I +L+ D+D+ILID
Sbjct: 61 VDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDS 120
Query: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV-GIVLRKAGLAILG------FILNR 172
PAG++ A+L + AL+V PE+S L D+ +V GI+ K+ A G I+NR
Sbjct: 121 PAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKSGEEVHKHLIINR 180
Query: 173 YG----RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVK 228
I + ++ +PL+ +IPED I T +G P + + + E AKA+ +
Sbjct: 181 LKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVI--RTDCESAKAYQR 238
Query: 229 LAQEV 233
+ + +
Sbjct: 239 ITRRI 243
>pir||D75478 septum site-determining protein - Deinococcus radiodurans (strain
R1) >gi|6458463|gb|AAF10331.1|AE001931_2 (AE001931)
septum site-determining protein [Deinococcus
radiodurans]
Length = 276
Score = 123 bits (305), Expect = 2e-27
Identities = 80/241 (33%), Positives = 132/241 (54%), Gaps = 11/241 (4%)
Query: 2 ARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTLH 60
A++I + SGKGG GKTT TAN+ AL +G+KV+ +D D+ + NL +V+G++ V L
Sbjct: 11 AKVIVVTSGKGGVGKTTTTANIGAALARLGEKVVVIDVDVGLRNLDVVMGLESRVVFDLV 70
Query: 61 DVLAGEAKLQDAIYM-TQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSL--KGDYDFILI 117
DVL G+ ++ A+ + +N+++LP A DP EV+K L + +D +LI
Sbjct: 71 DVLEGKCRMNQALIRDKRVENLHLLP-ASQTRDKDALDPEVFKEVVKGLLEEEGFDRVLI 129
Query: 118 DCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG--- 174
D PAG++ +A E AL+V NPE+S + D ++ +L + + ++NR
Sbjct: 130 DSPAGIESGFRTAAAPAEGALVVVNPEVSSVRDADRIIGLLEAQQITEIRLVVNRLRPKM 189
Query: 175 -RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEV 233
+ N + D D++ V + ++PED I T G PAV K ++ AF+ AQ +
Sbjct: 190 VASGNMLSIDDMVDILGVKPIGIVPEDEGIIVSTNVGEPAVLGK--TKAGDAFMATAQRI 247
Query: 234 E 234
+
Sbjct: 248 Q 248
>dbj|BAA90628.1| (AP001129) Similar to Chlorella vulgaris C-27 chloroplast DNA, cell
division inhibitor MinD. (AB001684) [Oryza sativa]
Length = 306
Score = 122 bits (302), Expect = 5e-27
Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 26/241 (10%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTLHD 61
R++ + SGKGG GKTT TANL+ +L + +AVD D + NL L+LG+++ V +T D
Sbjct: 37 RVVVVTSGKGGVGKTTTTANLAASLARLSLSAVAVDADAGLRNLDLLLGLENRVHLTAAD 96
Query: 62 VLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPR-KLP------------EVIKSL 108
VLAG+ +L A+ + D + + + PR KLP + ++
Sbjct: 97 VLAGDCRLDQALVRHR--------ALHDLQLLCLSKPRSKLPLAFGSKTLTWVADALRRA 148
Query: 109 KGDYDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGF 168
FILIDCPAG+ ++A+ EEA+LVT P+I+ L D +V +L G+ +
Sbjct: 149 ANPPAFILIDCPAGVDAGFVTAIAPAEEAVLVTTPDITALRDADRVAGLLECDGIKDIKI 208
Query: 169 ILNRYG----RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAK 224
I+NR + E+ + Q+++ +PLL V+PED + T G+P V P +
Sbjct: 209 IVNRVRPDLVKGEDMMSALDVQEMLGLPLLGVVPEDAEVIRSTNRGVPLVLNDPPTPAGL 268
Query: 225 A 225
A
Sbjct: 269 A 269
>sp|Q9X2I3|MIND_THEMA SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443735|pir||A72200 septum site-determining protein
MinD - Thermotoga maritima (strain MSB8)
>gi|4982456|gb|AAD36932.1|AE001824_1 (AE001824) septum
site-determining protein MinD [Thermotoga maritima]
Length = 271
Score = 121 bits (301), Expect = 7e-27
Identities = 77/241 (31%), Positives = 131/241 (53%), Gaps = 10/241 (4%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
M +I + SGKGG GKTT+TANL AL ++G+KV +D D+ + NL +VLG+++ + T+
Sbjct: 1 MGNVIVVTSGKGGVGKTTITANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYTM 60
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID 118
DV+ G+ Q+A+ N+Y+LP + M P + ++K L +D+I+ID
Sbjct: 61 IDVVNGKVSPQEALVKHKMLKNLYLLPASQIATKEM-ISPNDMKAIVKELIPHFDYIIID 119
Query: 119 CPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLA--ILGFILNRYG-- 174
PAG++ +A+ E L+VT PE+ ++D +V +L G + + I+NR+
Sbjct: 120 SPAGIERGFRNAVAPAERVLVVTTPELPAISDADRVIGLLENFGFSDEKINVIINRFKPH 179
Query: 175 --RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQE 232
+ + D + + + ++AVIP+ I + GIP V S +K F LA+
Sbjct: 180 MVKKGEMLTTDDIKHTLSLEIIAVIPDSEDIIVASNTGIP-VSLNGNSRISKNFENLARR 238
Query: 233 V 233
+
Sbjct: 239 I 239
>gi|11466429 septum-site determining protein [Mesostigma viride]
>gi|7259572|gb|AAF43873.1|AF166114_85 (AF166114)
septum-site determining protein [Mesostigma viride]
Length = 286
Score = 119 bits (295), Expect = 4e-26
Identities = 78/237 (32%), Positives = 127/237 (52%), Gaps = 6/237 (2%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTLHD 61
R I I SGKGG GKTT TANL +++ +G KV +D D+ + NL L+LG+++ V T +
Sbjct: 18 RTIVITSGKGGVGKTTTTANLGMSIARLGYKVALIDADVGLRNLDLLLGLENRVIYTAME 77
Query: 62 VLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLK-GDYDFILIDCP 120
V GE L A+ + + L R + ++ S++ +Y+FILIDCP
Sbjct: 78 VFEGECCLDQALIRDKRWSNLALLAISKTRQRYHLTRRNMEMLVDSIRLRNYNFILIDCP 137
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGR---TE 177
AG+ + ++A+ EEA++VT PEI+ + D +V +L +G+ + ++NR +
Sbjct: 138 AGIDVGFVNAVAPAEEAVVVTTPEITSIRDADRVAGLLEASGIYEVKLLVNRVRPDMIQK 197
Query: 178 ND-IPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEV 233
ND + Q+++ +PLL IPED + T G P V K + +F A+ +
Sbjct: 198 NDMLSVRDVQEMLGIPLLGAIPEDTNVIVSTNRGQPLVLNKKLTLSGISFENAARRL 254
>sp|Q01464|MIND_BACSU SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|322178|pir||G45239 cell division inhibitor minD
[validated] - Bacillus subtilis
>gi|142859|gb|AAA22401.1| (M96343) MinD protein
[Bacillus subtilis] >gi|143216|gb|AAA22609.1| (M95582)
putative [Bacillus subtilis] >gi|580893|emb|CAA78818.1|
(Z15113) MinD [Bacillus subtilis]
>gi|2635264|emb|CAB14759.1| (Z99118) ATPase activator of
MinC [Bacillus subtilis]
Length = 268
Score = 118 bits (294), Expect = 5e-26
Identities = 68/240 (28%), Positives = 132/240 (54%), Gaps = 8/240 (3%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
M I I SGKGG GKTT +ANL AL +GK+V VD D+ + NL +V+G+++ + L
Sbjct: 1 MGEAIVITSGKGGVGKTTTSANLGTALAILGKRVCLVDTDIGLRNLDVVMGLENRIIYDL 60
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID 118
DV+ G K+ A+ +FD++ L A P ++ +++ LK ++D+++ID
Sbjct: 61 VDVVEGRCKMHQALVKDKRFDDLLYLMPAAQTSDKTAVAPEQIKNMVQELKQEFDYVIID 120
Query: 119 CPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK-VGIVLRKAGL----AILGFILNRY 173
CPAG++ +A+ ++A++VT PEIS + D + +G++ ++ + ++ I N
Sbjct: 121 CPAGIEQGYKNAVSGADKAIVVTTPEISAVRDADRIIGLLEQEENIEPPRLVVNRIRNHL 180
Query: 174 GRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEV 233
+ + + D + + LL ++ +D + + + G P + P++ + A+ +A+ +
Sbjct: 181 MKNGDTMDIDEIVQHLSIDLLGIVADDDEVIKASNHGEP-IAMDPKNRASIAYRNIARRI 239
>sp|P18197|MIND_ECOLI SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|72935|pir||CCECID cell division inhibitor minD -
Escherichia coli >gi|146867|gb|AAB59062.1| (J03153) MinD
protein [Escherichia coli] >gi|1651574|dbj|BAA36009.1|
(D90751) Cell division inhibitor MinD. [Escherichia
coli] >gi|1651578|dbj|BAA36022.1| (D90752) Cell division
inhibitor MinD. [Escherichia coli]
>gi|1787423|gb|AAC74259.1| (AE000216) cell division
inhibitor, a membrane ATPase, activates minC
[Escherichia coli K12]
Length = 270
Score = 118 bits (293), Expect = 6e-26
Identities = 80/254 (31%), Positives = 143/254 (55%), Gaps = 22/254 (8%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDVTL 59
MARII + SGKGG GKTT +A ++ L + GKK + +D D+ + NL L++G + V
Sbjct: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAV--DWEHVMKADPRKLPEVIKSLKGDYDFIL 116
+V+ G+A L A+ + +N+Y+LP + D + + + K+ + +K++ D++FI+
Sbjct: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAM--DFEFIV 118
Query: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV-GIVLRKAGLAILG-------F 168
D PAG++ A+ A+ +EA++ TNPE+S + D+ ++ GI+ K+ A G
Sbjct: 119 CDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHL 178
Query: 169 ILNRY--GRTEND--IPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAK 224
+L RY GR + + +++ + L+ VIPED ++ + +G P + ++ K
Sbjct: 179 LLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI-LDINADAGK 237
Query: 225 AFVKLAQEVEKLAG 238
A+ A VE+L G
Sbjct: 238 AY---ADTVERLLG 248
>gi|11467859 septum-site determining protein [Nephroselmis olivacea]
>gi|11467886|ref|NP_050937.1| septum-site determining
protein [Nephroselmis olivacea]
>gi|5880788|gb|AAD54881.1|AF137379_104 (AF137379)
septum-site determining protein [Nephroselmis olivacea]
>gi|5880815|gb|AAD54908.1|AF137379_131 (AF137379)
septum-site determining protein [Nephroselmis olivacea]
Length = 274
Score = 118 bits (293), Expect = 6e-26
Identities = 77/237 (32%), Positives = 126/237 (52%), Gaps = 6/237 (2%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTLHD 61
R+I I SGKGG GKTT TANL + + +G +V +D D+ + NL L+LG+++ V T +
Sbjct: 14 RVIVITSGKGGVGKTTATANLGMCIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAME 73
Query: 62 VLAGEAKLQDAIYM-TQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP 120
V+ G+ +L+ A+ ++ N+ +L + + + + V + Y +ILIDCP
Sbjct: 74 VIEGQCRLEQALIRDKRWKNLSMLAMSKNRQRYNMTRKNMMMIVDSIKERGYQYILIDCP 133
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGR---TE 177
AG+ ++A+ +EA+LVT PEI+ + D +V +L + + NR +
Sbjct: 134 AGIDAGFVNAIAPADEAILVTTPEITAIRDADRVAGLLEANDFYNVRLVANRVRPEMIQQ 193
Query: 178 ND-IPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEV 233
ND + D Q ++ VPLL IPED + T G P V K + AF + A+ +
Sbjct: 194 NDMMSVDDVQGMIGVPLLGAIPEDKNVIISTNRGEPLVCQKTITLAGVAFEEAARRL 250
>pir||F70375 cell division inhibitor (septum placement) minD2 - Aquifex aeolicus
>gi|2983413|gb|AAC06996.1| (AE000712) septum
site-determining protein MinD [Aquifex aeolicus]
Length = 262
Score = 114 bits (283), Expect = 9e-25
Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 9/222 (4%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
MA +I I SGKGG GKTT+TAN+ AL ++GKKVL +D D+ + NL ++LG+++ + +
Sbjct: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
Query: 60 HDVLAGEAKLQDAIYMTQFD-NVYVLPGAVDWEHVMKADPRKLPEVIKSLK--GDYDFIL 116
DVL G + A+ + ++++LP A + D K + ++ +K G+YD+IL
Sbjct: 61 LDVLEGRVPYEKALVKDKRGLSLWLLP-ANQRANKDVIDIEKWNKTVEEIKNSGNYDYIL 119
Query: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG-- 174
+D PAG++ A+ ++AL+V NPE+S + D +V +L I+NR
Sbjct: 120 VDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWE 179
Query: 175 --RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAV 214
+ + + D++ ++ +IPE+P + + T G P V
Sbjct: 180 MVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIV 221
>emb|CAB53105.1| (AJ245645) cell division inhibitor MinD [Prototheca wickerhamii]
Length = 359
Score = 114 bits (282), Expect = 1e-24
Identities = 79/241 (32%), Positives = 127/241 (51%), Gaps = 14/241 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTLHD 61
R+I I SGKGG GKTT TANL +++ G +V +D D+ + NL L+LG+++ + T D
Sbjct: 94 RVIVITSGKGGVGKTTTTANLGMSIARFGYRVALIDADIGLRNLDLLLGLENRITFTAMD 153
Query: 62 VLAGEAKLQDAIYM-TQFDNVYVLPGAVDWEH----VMKADPRKLPEVIKSLKGDYDFIL 116
++ G +L A+ ++ N+ +L AV H V + R+L IK L + IL
Sbjct: 154 IIEGRCRLDQALVREKRWKNLALL--AVSKNHQKYNVTQQHMRQLVFSIKEL--GINSIL 209
Query: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG-- 174
IDCPAG+ + ++A+ +EA++VT PEI+ + D +V +L + +LNR
Sbjct: 210 IDCPAGIDVGFINAIAPAQEAIIVTTPEITAIRDADRVAGLLEANTIVDTKLLLNRVRMD 269
Query: 175 --RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQE 232
+ + Q+ + +PLL IPED + T +G P V K + AF A+
Sbjct: 270 MIQNSTMLSIMDVQETLGIPLLGAIPEDTNVIISTNKGEPLVLDKKLTLSGIAFENAARR 329
Query: 233 V 233
+
Sbjct: 330 L 330
>pir||C82136 septum site-determining protein MinD VC1960 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656499|gb|AAF95108.1| (AE004271) septum
site-determining protein MinD [Vibrio cholerae]
Length = 276
Score = 113 bits (281), Expect = 2e-24
Identities = 76/242 (31%), Positives = 137/242 (56%), Gaps = 19/242 (7%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDVTL 59
M+RII + SGKGG GKTT +A ++ L GKK +D D+ + NL L++G + V
Sbjct: 7 MSRIIVVTSGKGGVGKTTSSAAIASGLALRGKKTAVIDFDIGLRNLDLIMGCERRVVYDF 66
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAV--DWEHVMKADPRKLPEVIKSLKGDYDFIL 116
+V+ GEA L A+ + +N+++LP + D + + K +++ +K + +DFI+
Sbjct: 67 VNVINGEATLNQALIKDKRNENLFILPASQTRDKDALTKDGVQRVLNDLKEM--GFDFII 124
Query: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV-GIVLRKAGLAILG-------F 168
D PAG++ A+ A+ +EA++ TNPE+S + D+ ++ GI+ K+ A G
Sbjct: 125 CDSPAGIEQGALMALYYADEAIVTTNPEVSSVRDSDRILGILDSKSMRAEQGQAPIKQHL 184
Query: 169 ILNRYGR---TEND-IPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAK 224
+L RY T+ + + ++++ VPLL VIPE A+ + +G+P + + +S+ +
Sbjct: 185 LLTRYNPARVTQGEMLSVQDVEEILHVPLLGVIPESQAVLNASNKGVPVI-FDDQSDAGQ 243
Query: 225 AF 226
A+
Sbjct: 244 AY 245
>pir||C81230 septum site-determining protein MinD NMB0171 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7225389|gb|AAF40628.1| (AE002374) septum
site-determining protein MinD [Neisseria meningitidis
MC58] >gi|7378872|emb|CAB83415.1| (AL162752) septum
site-determining protein [Neisseria meningitidis Z2491]
Length = 271
Score = 110 bits (272), Expect = 2e-23
Identities = 69/229 (30%), Positives = 124/229 (54%), Gaps = 15/229 (6%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDVTL 59
MA+II + SGKGG GKTT +A+++ L G K +D D+ + NL L++G + V L
Sbjct: 1 MAKIIVVTSGKGGVGKTTTSASIATGLALRGYKTAVIDFDVGLRNLDLIMGCERRVVYDL 60
Query: 60 HDVLAGEAKLQDAIYMTQ-FDNVYVLPGAV--DWEHVMKADPRKLPEVIKSLKGDYDFIL 116
+V+ GEA L A+ + +N+++LP + D + + + K+ + + K +++I+
Sbjct: 61 INVIQGEATLNQALIKDKNCENLFILPASQTRDKDALTREGVEKVMQELSGKKMGFEYII 120
Query: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV-GIVLRKAGLAILGFILNRYGR 175
D PAG++ A+ A+ +EA++ TNPE+S + D+ ++ GI+ K+ A G + +
Sbjct: 121 CDSPAGIEQGALMALYFADEAIVTTNPEVSSVRDSDRILGILQSKSHKAEQGGSVKEHLL 180
Query: 176 TENDIPPDAAQ----------DVMDVPLLAVIPEDPAIREGTLEGIPAV 214
P A+ D++ +PLL VIPE + + + G P +
Sbjct: 181 ITRYSPERVAKGEMLSVQDICDILHIPLLGVIPESQNVLQASNSGEPVI 229
>sp|P57411|MIND_BUCAI SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|10039000|dbj|BAB13034.1| (AP001119) septum
site-determining protein minD [Buchnera sp. APS]
Length = 270
Score = 109 bits (270), Expect = 3e-23
Identities = 69/226 (30%), Positives = 125/226 (54%), Gaps = 18/226 (7%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDVTL 59
M RII + SGKGG GKTT +A + L + GKK + +D D+ + NL L++G + V
Sbjct: 1 MTRIIVVTSGKGGVGKTTSSAAIGTGLAQKGKKTIVIDFDIGLRNLDLIMGCERRVVYDF 60
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAV--DWEHVMKADPRKLPEVIKSLKGDYDFIL 116
+V+ G+A L AI + +N+++LP + D + + + K+ + + +K ++DFI+
Sbjct: 61 INVIQGDATLNQAIIKDKKTNNLFILPASQTRDKDALTRIGVEKV--LTELIKMNFDFII 118
Query: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV-GIVLRKAGLAILG-------F 168
D PAG++ A+ A+ +EA++ TNPE+S + D+ ++ GI+ K+ A
Sbjct: 119 CDSPAGIETGAILAIYFADEAIITTNPEVSSVRDSDRILGIISSKSKRAEKNITPIKEYL 178
Query: 169 ILNRYG----RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEG 210
+L RY + + D++ +P++ VIPED ++ + +G
Sbjct: 179 LLTRYNPRRVKKGEMLSMTDVLDILQIPIIGVIPEDQSVLRASNQG 224
>pir||F83239 cell division inhibitor MinD PA3244 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949367|gb|AAG06632.1|AE004747_5 (AE004747) cell
division inhibitor MinD [Pseudomonas aeruginosa]
Length = 271
Score = 109 bits (270), Expect = 3e-23
Identities = 79/254 (31%), Positives = 141/254 (55%), Gaps = 23/254 (9%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDVTL 59
MA+I+ + SGKGG GKTT +A + L G K + VD D+ + NL L++G + V
Sbjct: 1 MAKILVVTSGKGGVGKTTTSAAIGTGLALRGFKTVIVDFDVGLRNLDLIMGCERRVVYDF 60
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAV--DWEHVMKADPRKLPEVIKSLKGDYDFIL 116
+V+ GEA L A+ + +N++VL + D + + K K V+ L+ D+++I+
Sbjct: 61 VNVVNGEATLTQALIKDKRLENLHVLAASQTRDKDALTKEGVEK---VMAELRKDFEYII 117
Query: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK-VGIVLRKAGLAILG-------F 168
D PAG++ A AM +EA++VTNPE+S + D+ + +G++ K+ A G
Sbjct: 118 CDSPAGIEKGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSQRAEKGEEPIKEHL 177
Query: 169 ILNRYGR---TEND-IPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAK 224
+L RY T+ + + D ++++ + LL VIPE A+ + + +G+P + +S+ +
Sbjct: 178 LLTRYNPERVTKGEMLGVDDVEEILAIRLLGVIPESQAVLKASNQGVPVI-LDEQSDAGQ 236
Query: 225 AFVKLAQEVEKLAG 238
A+ + V++L G
Sbjct: 237 AY---SDAVDRLLG 247
>gi|11499521 cell division inhibitor (minD-2) [Archaeoglobus fulgidus]
>gi|7443739|pir||H69491 cell division inhibitor (minD-2)
homolog - Archaeoglobus fulgidus
>gi|2648607|gb|AAB89318.1| (AE000970) cell division
inhibitor (minD-2) [Archaeoglobus fulgidus]
Length = 252
Score = 107 bits (265), Expect = 1e-22
Identities = 69/231 (29%), Positives = 122/231 (51%), Gaps = 7/231 (3%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
M +++ VSGK GK+T+T NLSV + + +V +D D ++ LS + VDDV +T
Sbjct: 1 MREVLAAVSGKESEGKSTLTVNLSVLMAQKDYRVAVIDFDPSLPALSSLCKVDDVPLTAK 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP 120
+V+ G A + D I+ + V V+P + + KA+ R L E ++ D + +D P
Sbjct: 61 NVIDGFASVDD-IFYSGISGVEVIPAGMSIKEFRKANLRDLLERVEE---SADVLFLDVP 116
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDI 180
GL D++ A+ + LLV PE + L + + ++ K G +LN+ E ++
Sbjct: 117 GGLCHDSVLAIYAATSVLLVIKPEAASLEAALPLPRIIEKLKADFAGVVLNKV--EEGEV 174
Query: 181 PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQ 231
D + ++ ++A IP D AI++ G P + P SE +K+FV++++
Sbjct: 175 EIDDVEALIG-NVIAEIPYDEAIKKAMASGRPVIFSSPMSESSKSFVEISE 224
>pir||C82695 septum site-determining protein XF1321 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9106316|gb|AAF84130.1|AE003965_3 (AE003965) septum
site-determining protein [Xylella fastidiosa]
Length = 269
Score = 106 bits (261), Expect = 3e-22
Identities = 78/230 (33%), Positives = 125/230 (53%), Gaps = 19/230 (8%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDVTL 59
MA II I SGKGG GKTT +A+L+ L GKKV+ +D D+ + NL L++G + V
Sbjct: 1 MAEIIVITSGKGGVGKTTTSASLACGLARRGKKVVVIDFDVGLRNLDLIMGCERRVVYDF 60
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAV--DWEHVMKADPRKLPEVIKSLKGD-YDFI 115
+V+ GEA L+ A+ +FDN+Y+L A D + + K K V+ L+ + +D+I
Sbjct: 61 VNVIDGEATLKQALIKDKRFDNLYLLAAAQTRDKDALTKEGVEK---VLNELQAEGFDYI 117
Query: 116 LIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK-VGIVLRK------AGLAILGF 168
D PAG++ A AM + A++V NPE+S + D+ + +G++ K G I
Sbjct: 118 CCDSPAGIEKGASLAMYFADRAVVVVNPEVSSVRDSDRIIGLLDSKTKKAETGGSIITTL 177
Query: 169 ILNRY--GRTENDIPPDAA--QDVMDVPLLAVIPEDPAIREGTLEGIPAV 214
+L RY R E+ A ++V+ + + VIPE + + +G P +
Sbjct: 178 LLTRYSPARVESGEMLSIADVEEVLGLKAIGVIPESGDVLNASNKGEPVI 227
>dbj|BAB07777.1| (AP001520) centromere-like function involved in forespore
chromosome partition [Bacillus halodurans]
Length = 253
Score = 105 bits (259), Expect = 6e-22
Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 18/250 (7%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVT 58
MA++ISI + KGG GKTT NLS L +G++VL VD D N + +G++ D+D
Sbjct: 1 MAKVISIANQKGGVGKTTTAVNLSACLAHLGQRVLLVDID-PQGNATSGVGIEKGDIDEC 59
Query: 59 LHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWE----HVMKADPR--KLPEVIKSLKGDY 112
++DVL + QD I T +N+ VLP + ++ R +L + + Y
Sbjct: 60 IYDVLVEDVDTQDVIRTTNMENLDVLPSTIQLSGAEIELVSTISREVRLKRALDQVGRKY 119
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAIL 166
DFI IDCP L L ++A+ + + L+ E +S L +T+++ LAI
Sbjct: 120 DFIFIDCPPSLGLLTINALTASDSVLIPVQCEYYALEGLSQLLNTVRLVQKHLNTDLAIE 179
Query: 167 GFILNRYGRTEN---DIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G +L N + + + + +IP + + E G P ++Y +S GA
Sbjct: 180 GVLLTMLDARTNLGIQVIDEVKKYFREKVFDTIIPRNVRLGEAPSHGEPIIRYDAKSRGA 239
Query: 224 KAFVKLAQEV 233
+ ++ LA+EV
Sbjct: 240 EVYLDLAKEV 249
>emb|CAC06097.1| (AJ010494) ParA protein [Listeria monocytogenes]
Length = 250
Score = 104 bits (256), Expect = 1e-21
Identities = 72/247 (29%), Positives = 128/247 (51%), Gaps = 18/247 (7%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVTLHD 61
+I++ + KGG GKTT + NLS +L +GKKVL VD D N S +GV+ +++ ++D
Sbjct: 1 MIALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDID-PQGNASSGVGVNKGEIEHCIYD 59
Query: 62 VLAGEAKLQDAIYMTQFDNVYVLPGAVDWE----HVMKADPR--KLPEVIKSLKGDYDFI 115
VL + +QD + T DN+ V+P + ++ A R +L + I S++ DYD++
Sbjct: 60 VLVDDVAIQDVLQKTDLDNLNVIPATIQLAGAEVELVPAISREIRLKKAIDSIRDDYDYV 119
Query: 116 LIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAILGFI 169
+IDCP L L ++A+ + + L+ E +S L +T+++ L I G +
Sbjct: 120 IIDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQLLNTIRIVQKHLNEDLQIEGVL 179
Query: 170 LNRYGRTEN---DIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAF 226
L N + + + + +IP + + E G P + Y +S+GA+ +
Sbjct: 180 LTMLDARTNLGIQVIEEVKKYFQNKVFNTIIPWNVRLSEAPSHGKPILLYDAKSKGAEVY 239
Query: 227 VKLAQEV 233
++LA+EV
Sbjct: 240 LELAKEV 246
>sp|P37522|SOJ_BACSU SOJ PROTEIN >gi|2127177|pir||I40444 Spo0A activation inhibitor soj
- Bacillus subtilis >gi|467381|dbj|BAA05227.1| (D26185)
regulation of Spo0J and Orf283 (probable) [Bacillus
subtilis] >gi|580906|emb|CAA44408.1| (X62539) unnamed
protein product [Bacillus subtilis]
>gi|2636644|emb|CAB16134.1| (Z99124) soj [Bacillus
subtilis]
Length = 253
Score = 103 bits (254), Expect = 2e-21
Identities = 73/250 (29%), Positives = 125/250 (49%), Gaps = 18/250 (7%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVT 58
M +II+I + KGG GKTT + NL L +GK+VL VD D N + LG++ DV+
Sbjct: 1 MGKIIAITNQKGGVGKTTTSVNLGACLAYIGKRVLLVDID-PQGNATSGLGIEKADVEQC 59
Query: 59 LHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHV-MKADPR-----KLPEVIKSLKGDY 112
++D+L +A + D I T +N+ V+P + ++ P +L ++++K +Y
Sbjct: 60 VYDILVDDADVIDIIKATTVENLDVIPATIQLAGAEIELVPTISREVRLKRALEAVKQNY 119
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAIL 166
D+I+IDCP L L ++A+ + + ++ E +S L +T+++ L I
Sbjct: 120 DYIIIDCPPSLGLLTINALTASDSVVIPVQCEYYALEGLSQLLNTVRLVQKHLNTDLMIE 179
Query: 167 GFILNRYGRTEN---DIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G +L N + + + D VIP + + E G P + Y P S GA
Sbjct: 180 GVLLTMLDARTNLGIQVIEEVKKYFRDKVYKTVIPRNVRLSEAPSHGKPIILYDPRSRGA 239
Query: 224 KAFVKLAQEV 233
+ ++ LA+EV
Sbjct: 240 EVYLDLAKEV 249
>gb|AAF33831.1|AF226282_5 (AF226282) hypothetical flagellar biosynthesis switch protein
[Xanthomonas oryzae pv. oryzae]
Length = 319
Score = 102 bits (252), Expect = 4e-21
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 14/245 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
R I++ GKGG GKT ++ANL+VAL +MGK+ L +D DL +ANL +VLG+ TL D+
Sbjct: 52 RTIAVTGGKGGVGKTNISANLAVALADMGKRTLLLDADLGLANLDVVLGLAP-KYTLADL 110
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRK---LPEVIKSLKGDYDFILIDC 119
+AG L D + + V V+P A H+ + P + L V L+ D D ++ID
Sbjct: 111 IAGRCTL-DEVIIEGPGGVLVVPAASGRRHMAELAPAQHIGLVNVFSELERDLDVMVIDT 169
Query: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK-VGIVLRKAGLAILGFILN-----RY 173
AG+ ++ + ++ ++V E + +TD + ++ R+ G+ L I N
Sbjct: 170 AAGITDSVLTFCQAAQDTVVVVCDEPASITDAYALIKVLSRERGVDRLQIIANMVRDPNE 229
Query: 174 GRTENDIPPDAAQDVM-DVPL--LAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLA 230
GR D + + DV L L +P+D +R P +K P S A+A ++A
Sbjct: 230 GRLLYDKLSRVCEKFLGDVSLNYLGHVPQDDWLRLSVQRQQPVIKAYPASPSAQAIAEIA 289
Query: 231 QEVEK 235
+ +
Sbjct: 290 RRTSR 294
>gb|AAA85593.1| (U43739) YlxH [Borrelia burgdorferi]
Length = 281
Score = 98.3 bits (241), Expect = 8e-20
Identities = 70/248 (28%), Positives = 125/248 (50%), Gaps = 17/248 (6%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
R I++ SGKGG GK+ + L++ E+GKKVL +D D+ MAN++++LGV +++ +
Sbjct: 18 RFIAVSSGKGGVGKSNIAIGLALKYSELGKKVLILDADIGMANVNILLGVIP-KYSIYHM 76
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKG--DYDFILIDCP 120
+A +++ I T++ N+ +L GA ++ + + IK L +YD ++ID
Sbjct: 77 IAQSRDIREVITKTEY-NIDLLAGASGTMELLDLSDVDVNKFIKELLKIYEYDIVVIDTS 135
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVL--RKAGLAILGFILNRYGRTEN 178
AG+ +S +LS ++ ++VT PE + +TD + VL + L L I+NR
Sbjct: 136 AGISRQVISFLLSSDDVVIVTTPEPTSITDAYGIIKVLSYKMENLKNLRLIVNRVANVSE 195
Query: 179 DIPPDAAQDVMD---------VPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKL 229
A+ V+D + L I ED IR + P V P S+ + +
Sbjct: 196 --AKGVAKKVIDISGQFLNLNIDYLGHIYEDQNIRSSVFKQKPFVLVNPNSKASYCLDSI 253
Query: 230 AQEVEKLA 237
+E+++
Sbjct: 254 VATLEEVS 261
>pir||E70133 ATP-binding protein (ylxH-1) homolog - Lyme disease spirochete
>gi|2688197|gb|AAC66679.1| (AE001137) ATP-binding
protein (ylxH-1) [Borrelia burgdorferi]
Length = 295
Score = 98.3 bits (241), Expect = 8e-20
Identities = 70/248 (28%), Positives = 125/248 (50%), Gaps = 17/248 (6%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
R I++ SGKGG GK+ + L++ E+GKKVL +D D+ MAN++++LGV +++ +
Sbjct: 32 RFIAVSSGKGGVGKSNIAIGLALKYSELGKKVLILDADIGMANVNILLGVIP-KYSIYHM 90
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKG--DYDFILIDCP 120
+A +++ I T++ N+ +L GA ++ + + IK L +YD ++ID
Sbjct: 91 IAQSRDIREVITKTEY-NIDLLAGASGTMELLDLSDVDVNKFIKELLKIYEYDIVVIDTS 149
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVL--RKAGLAILGFILNRYGRTEN 178
AG+ +S +LS ++ ++VT PE + +TD + VL + L L I+NR
Sbjct: 150 AGISRQVISFLLSSDDVVIVTTPEPTSITDAYGIIKVLSYKMENLKNLRLIVNRVANVSE 209
Query: 179 DIPPDAAQDVMD---------VPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKL 229
A+ V+D + L I ED IR + P V P S+ + +
Sbjct: 210 --AKGVAKKVIDISGQFLNLNIDYLGHIYEDQNIRSSVFKQKPFVLVNPNSKASYCLDSI 267
Query: 230 AQEVEKLA 237
+E+++
Sbjct: 268 VATLEEVS 275
>gb|AAD19734.1| (AF124349) ATP-binding protein [Zymomonas mobilis]
Length = 273
Score = 97.9 bits (240), Expect = 1e-19
Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 13/249 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++I++ SGKGG GKT V ANL+ AL ++ ++ L +D DL MA+ +VLG++ D T+ D+
Sbjct: 10 QVIAVASGKGGVGKTNVIANLTAALSKIKQRTLLLDCDLGMADAGIVLGMNS-DRTIEDI 68
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKAD---PRKLPEVIKSLKGDYDFILIDC 119
L G + +D + F + ++PG +M+ D R+L + ++ +D+IL+D
Sbjct: 69 LTGRRQYEDVVQQGVF-GLNLVPGVNGAGRIMEMDAVAKRRLVDSLRPWTKSFDYILLDN 127
Query: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLR-----KAGLAILGFILNR-Y 173
P+G ++S M S ++ +LV + E + D + +L K L + + +
Sbjct: 128 PSGASSSSLSLMASADQVILVLSSEPTSFMDGYALIKLLALEYKVKEILVVTNMVEDETE 187
Query: 174 GRTENDIPPDAAQDVMDVPL--LAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQ 231
GR D + + + L L +P D IRE L + P S ++AF +LA
Sbjct: 188 GRDLFRRFSDVSARFLGIKLHHLGSVPRDSHIREAVLRKRCCLDLFPRSRASEAFERLAH 247
Query: 232 EVEKLAGIK 240
+ + +K
Sbjct: 248 RLNDYSLLK 256
>pir||B75038 soj protein homolog PAB0852 - Pyrococcus abyssi (strain Orsay)
>gi|5458712|emb|CAB50199.1| (AJ248287) SOJ PROTEIN
homolog [Pyrococcus abyssi]
Length = 257
Score = 97.9 bits (240), Expect = 1e-19
Identities = 68/252 (26%), Positives = 128/252 (49%), Gaps = 21/252 (8%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDV---DV 57
M +ISI + KGG GKTT+ NL +L +GKKVL VD D ++G+D V D
Sbjct: 1 MGTVISIANQKGGVGKTTIALNLGYSLSRLGKKVLLVDVDPQFNLTFALIGMDVVNYEDK 60
Query: 58 TLHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWE----HVMKA--DPRKLPEVIKSLKGD 111
+ ++ E+ ++D + + +N++++P + +M R+L + +K + D
Sbjct: 61 NVGTLMTRESSVEDVLIEVE-ENLHLIPSHLTLSAKEIEIMNTYNRERRLEKALKPIFPD 119
Query: 112 YDFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAI 165
YD+I+ID P + + ++++ + + L+ + + + M + GL +
Sbjct: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMSMIREETNEGLRL 179
Query: 166 LGFILNRYGRTENDIPPDAAQDVM----DVPLLAVIPEDPAIREGTLEGIPAVKYKPESE 221
LG + N++ + + +P +++ D P+L IP+ AI + EG +Y+P +
Sbjct: 180 LGIVPNKFTK-QTKVPQARLKELKELYPDAPILTTIPKAIAIEKAQAEGKSIFEYEPNGK 238
Query: 222 GAKAFVKLAQEV 233
+KAF KLA+EV
Sbjct: 239 ASKAFEKLAREV 250
>sp|O05189|PARA_CAUCR CHROMOSOME PARTITIONING PROTEIN PARA >gi|1916914|gb|AAB51267.1|
(U87804) ParA [Caulobacter crescentus]
Length = 266
Score = 96.7 bits (237), Expect = 2e-19
Identities = 75/251 (29%), Positives = 120/251 (46%), Gaps = 23/251 (9%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVD--VTLH 60
R+++I + KGG GKTT NL A +G++VL +D D N S LG+ TL+
Sbjct: 7 RVLAIANQKGGVGKTTTAINLGTAWA-LGERVLLIDAD-PQGNCSTGLGIGRTQRRTTLY 64
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLK--GDY 112
DVL GEA + DA T+ + V+P D V +L + +++++ G Y
Sbjct: 65 DVLMGEAPVVDAAVKTELPGLDVIPADADLSGVEIELGQTARRSYRLRDALEAIRANGPY 124
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAG------LAIL 166
++LIDCP L + ++AM + + + E L ++ + + L I
Sbjct: 125 TYVLIDCPPSLNVLTVNAMTAADAVFVPLQCEFFALEGLTQLMRTIERVARSLNPRLEIQ 184
Query: 167 GFILNRYGRTENDIPPDAAQDVM----DVPLLAVIPEDPAIREGTLEGIPAVKYKPESEG 222
G +L Y R N + A+DV D AVIP + + E G P + Y + G
Sbjct: 185 GVVLTIYDR-RNSLSEQVAKDVRAHFGDKVYDAVIPRNVRVSEAPSFGKPVLLYDLKCAG 243
Query: 223 AKAFVKLAQEV 233
++A++KLA+EV
Sbjct: 244 SQAYLKLAREV 254
>pir||B71346 probable SpoOJ regulator (soj) - syphilis spirochete
>gi|3322545|gb|AAC65260.1| (AE001208) SpoOJ regulator
(soj) [Treponema pallidum]
Length = 253
Score = 96.3 bits (236), Expect = 3e-19
Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 19/249 (7%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
M + + V+ KGG GKTT NL L GKK L VD D N+S LG+ +T++
Sbjct: 1 MGKTLVFVNQKGGVGKTTSAINLGAYLALAGKKTLLVDFD-PQGNMSSGLGLAR-GLTVY 58
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDW-----EHVMKADPR-KLPEVIKSLKGDYDF 114
D+LAG+A + + T N++ +P ++D E V + D L +++ +K YDF
Sbjct: 59 DLLAGKAHINSVLRTTPVHNLFAIPASIDLSGATVELVDEQDRELYLKKILAEVKDTYDF 118
Query: 115 ILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAILGF 168
ILIDCP L + ++ + + E + E ++ L T+K L+I G
Sbjct: 119 ILIDCPPSLGILTLNGLAAANEVFIPLQCEYFALEGLTLLLQTVKRVQSGLNTALSIGGI 178
Query: 169 ILNRYGRTENDIPPDAAQDVM----DVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAK 224
Y T + + + V D +IP + + E G+P Y + GA+
Sbjct: 179 FFTMYD-TRTKLAQEVVKQVTTYFGDKVFNTIIPRNVKLSEAPSHGLPISSYDAQCAGAR 237
Query: 225 AFVKLAQEV 233
++ KLA+E+
Sbjct: 238 SYEKLAREI 246
>pir||B82950 chromosome partitioning protein Soj PA5563 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951904|gb|AAG08948.1|AE004968_2 (AE004968)
chromosome partitioning protein Soj [Pseudomonas
aeruginosa]
Length = 262
Score = 96.0 bits (235), Expect = 4e-19
Identities = 72/260 (27%), Positives = 125/260 (47%), Gaps = 20/260 (7%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVT 58
MA++ +I + KGG GKTT NL+ +L ++VL +D D N + G+D +++ +
Sbjct: 1 MAKVFAIANQKGGVGKTTTCINLAASLVATKRRVLLLDLD-PQGNATTGSGIDKHNLEHS 59
Query: 59 LHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKGDY 112
++DVL GE L +A+ ++ +LP D M +L + ++ +Y
Sbjct: 60 IYDVLTGECNLAEAMQFSEHGGYQLLPANRDLTAAEVVLLEMDMKENRLRNALAPIRENY 119
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPE---ISCLTDTM----KVGIVLRKAGLAI 165
D+ILIDCP L + ++A+ + + ++ E + LTD M ++G +L L I
Sbjct: 120 DYILIDCPPSLSMLTVNALTAADGVIIPMQCEYYALEGLTDLMNSIQRIGQLLNPT-LKI 178
Query: 166 LGFILNRYG---RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEG 222
G + Y ND+ + D VIP + + E G+PA+ Y +S G
Sbjct: 179 EGLLRTMYDPRISLTNDVSAQLQEHFGDTLYSTVIPRNVRLAEAPSFGMPALVYDKQSRG 238
Query: 223 AKAFVKLAQEVEKLAGIKAK 242
A A++ LA E+ + K +
Sbjct: 239 AIAYLALAGELVRRQRAKGR 258
>sp|P31856|YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN GIDB-UNCI INTERGENIC REGION
>gi|94916|pir||S18097 regulatory protein spo0J homolog -
Pseudomonas putida >gi|45713|emb|CAA44421.1| (X62540)
unnamed protein product [Pseudomonas putida]
Length = 263
Score = 95.2 bits (233), Expect = 7e-19
Identities = 68/250 (27%), Positives = 120/250 (47%), Gaps = 18/250 (7%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVT 58
MA++ +I + KGG GKTT NL+ +L ++VL +D D N ++ GVD +++ +
Sbjct: 1 MAKVFAIANQKGGVGKTTTCINLAASLAATKRRVLLIDLD-PQGNATMGSGVDKHELEHS 59
Query: 59 LHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKGDY 112
++D+L GE L A++ ++ +LP D M+ +L + ++ +Y
Sbjct: 60 VYDLLIGECDLAQAMHYSEHGGFQLLPANRDLTAAEVVLLEMQVKESRLRNALAPIRDNY 119
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAIL 166
D+ILIDCP L + ++A+++ + ++ E +S L D +K L I
Sbjct: 120 DYILIDCPPSLSMLTLNALVASDGVIIPMQCEYYALEGLSDLVDNIKRIAARLNPELKIE 179
Query: 167 GFILNRYG---RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G + Y ND+ + VIP + + E G+PA+ Y +S GA
Sbjct: 180 GLLRTMYDPRLSLNNDVSAQLKEHFGPQLYDTVIPRNIRLAEAPSFGMPALAYDKQSRGA 239
Query: 224 KAFVKLAQEV 233
A++ LA E+
Sbjct: 240 LAYLALAGEL 249
>pir||B71714 soj protein (soj) RP058 - Rickettsia prowazekii
>gi|3860628|emb|CAA14529.1| (AJ235270) SOJ PROTEIN (soj)
[Rickettsia prowazekii]
Length = 255
Score = 95.2 bits (233), Expect = 7e-19
Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 18/255 (7%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGV--DDVDVTLH 60
+IISIV+ KGG KTT T NL+ A + KK+L +D D N S G+ T++
Sbjct: 2 KIISIVNQKGGVAKTTTTVNLATAFASVNKKILVIDLD-PQGNSSTGFGIIQQQRKNTIY 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWE------HVMKADPRKLPEVIKSLKGDYDF 114
VL +L+DAI T N+ ++ + +K L ++++ +K YD+
Sbjct: 61 QVLTNLIELKDAIIATNIPNLEIITSNTNLSAAELDLTTLKEREYVLMKLLEEVKILYDY 120
Query: 115 ILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAILGF 168
I+IDCP L L ++A+++ +E L+ + +S L T+++ + I G
Sbjct: 121 IIIDCPPSLNLLTVNALVASDEVLIPMQCDFYSLEGLSHLLKTIEIVEKKLNPKIKIAGI 180
Query: 169 ILNRY---GRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKA 225
+ Y R + D + + ++ VIP + + E G PA+ Y + GA A
Sbjct: 181 LFTMYDKRNRLTEQVEDDVRKCLGELVFKTVIPRNIKLSEAPSYGKPAILYDYKCAGAVA 240
Query: 226 FVKLAQEVEKLAGIK 240
+++L +E+ + G K
Sbjct: 241 YIELTKEILERYGEK 255
>gb|AAC62540.2| (AF052586) MotR [Pseudomonas aeruginosa]
Length = 275
Score = 94.8 bits (232), Expect = 9e-19
Identities = 67/243 (27%), Positives = 124/243 (50%), Gaps = 13/243 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++I++ GKGG GKT V+ NLS+AL ++G++V+ +D DL +AN+ ++LG+ TL DV
Sbjct: 7 QVIAVTGGKGGVGKTNVSVNLSLALADLGRRVMLLDADLGLANVDVLLGLSP-KRTLADV 65
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRK---LPEVIKSLKGDYDFILIDC 119
+ GE L+D I + ++P A + ++ P + L + + + D +++D
Sbjct: 66 IEGECDLRDVILQGP-GGIRIVPAASGTQSMVHLTPMQHAGLIQAFSDISDNIDVLVVDT 124
Query: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK-VGIVLRKAGLAILGFILN-----RY 173
AG+ +S + + +E LLV E + +TD + ++ R G+ + N +
Sbjct: 125 AAGIGDSVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRHYGMTRFRVLANMAHSPQE 184
Query: 174 GRTENDIPPDAAQDVMDVPL--LAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQ 231
GR +DV L + IP D ++R+ + + P S+ + AF +AQ
Sbjct: 185 GRNLFAKLTKVTDRFLDVALQYVGAIPYDESVRKAVQKQRSVYEAFPRSKASLAFRAVAQ 244
Query: 232 EVE 234
+V+
Sbjct: 245 KVD 247
>pir||B83463 flagellar synthesis regulator FleN PA1454 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|6692581|gb|AAF24747.1|AF133657_1 (AF133657)
flagellar number regulator [Pseudomonas aeruginosa]
>gi|9947406|gb|AAG04843.1|AE004575_2 (AE004575)
flagellar synthesis regulator FleN [Pseudomonas
aeruginosa]
Length = 280
Score = 94.8 bits (232), Expect = 9e-19
Identities = 66/243 (27%), Positives = 126/243 (51%), Gaps = 13/243 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++I++ GKGG GKT V+ NL++AL ++G++V+ +D DL +AN+ ++LG+ TL DV
Sbjct: 11 QVIAVTGGKGGVGKTNVSVNLALALADLGRRVMLLDADLGLANVDVLLGLTP-KRTLADV 69
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRK---LPEVIKSLKGDYDFILIDC 119
+ G +L+D + + V ++P A + ++ P + L + + + D +++D
Sbjct: 70 IEGRCELRDVLLLGP-GGVRIVPAASGTQSMVHLSPMQHAGLIQAFSDISDNLDVLVVDT 128
Query: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK-VGIVLRKAGLAILGFILN-----RY 173
AG+ +S + + +E LLV E + +TD + ++ R G+ + N +
Sbjct: 129 AAGIGDSVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRDHGMTRFRVLANMAHSPQE 188
Query: 174 GRTENDIPPDAAQDVMDVPL--LAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQ 231
GR +DV L + VIP D ++R+ + + P S+ + AF +AQ
Sbjct: 189 GRNLFAKLTKVTDRFLDVALQYVGVIPYDESVRKAVQKQRAVYEAFPRSKASLAFKAVAQ 248
Query: 232 EVE 234
+V+
Sbjct: 249 KVD 251
>pir||E82035 ParA family protein VC2773 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9657375|gb|AAF95912.1| (AE004343)
ParA family protein [Vibrio cholerae]
Length = 257
Score = 94.4 bits (231), Expect = 1e-18
Identities = 75/259 (28%), Positives = 117/259 (44%), Gaps = 20/259 (7%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVT 58
M +I++I + KGG GKTT NL+ ++ +KVL VD D N ++ GVD VD T
Sbjct: 1 MGKIVAIANQKGGVGKTTTCINLAASMAATKRKVLVVDLD-PQGNATMASGVDKYQVDST 59
Query: 59 LHDVLAGEAKLQDAI-------YMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGD 111
+++L +A + Y N V + V + R L + S++ +
Sbjct: 60 AYELLVEDAPFDQVVCRKTTGHYDLIAANGDVTAAEIKLMEVFAREVR-LKNALASVRDN 118
Query: 112 YDFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAI 165
YDFI IDCP L L ++AM + + L+ E ++ L DT+ + L I
Sbjct: 119 YDFIFIDCPPSLNLLTINAMAAADSVLVPMQCEYFALEGLTALMDTISKLAAVVNDNLKI 178
Query: 166 LGFILNRY---GRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEG 222
G + Y R N++ + VIP + + E G PA+ Y +S G
Sbjct: 179 EGILRTMYDPRNRLANEVSDQLKKHFGSKVYRTVIPRNVRLAEAPSHGKPAMYYDKQSAG 238
Query: 223 AKAFVKLAQEVEKLAGIKA 241
AKA++ LA E+ + I A
Sbjct: 239 AKAYLALAGEMLRREEIPA 257
>pir||D81227 ParA family protein NMB0191 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7225411|gb|AAF40648.1|
(AE002376) ParA family protein [Neisseria meningitidis
MC58]
Length = 257
Score = 94.0 bits (230), Expect = 1e-18
Identities = 73/250 (29%), Positives = 120/250 (47%), Gaps = 20/250 (8%)
Query: 2 ARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVT--L 59
A I++I + KGG GKTT T NL+ +L GK+VL VD D N + G+D + +
Sbjct: 3 ANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLD-PQGNATTGSGIDKAGLQSGV 61
Query: 60 HDVLAGEAKLQDAIYMTQFDNVYVLPGA------VDWEHVMK-ADPRKLPEVIKSLKGDY 112
+ VL G+A +Q A ++ + Y + GA + E V + A +L +K+++ DY
Sbjct: 62 YQVLLGDADVQSAAVRSK-EGGYAVLGANRALAGAEIELVQEIAREVRLKNALKAVEEDY 120
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRK------AGLAIL 166
DFILIDCP L L ++ +++ ++ E L + +RK L I
Sbjct: 121 DFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDIT 180
Query: 167 GFILNRY---GRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G + Y R ++ D+ VIP + + E G+P + Y +++G
Sbjct: 181 GIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKGT 240
Query: 224 KAFVKLAQEV 233
KA++ LA E+
Sbjct: 241 KAYLALADEL 250
>pir||A71125 probable SOJ protein - Pyrococcus horikoshii
>gi|3257176|dbj|BAA29859.1| (AP000003) 256aa long
hypothetical SOJ protein [Pyrococcus horikoshii]
Length = 256
Score = 92.4 bits (226), Expect = 4e-18
Identities = 68/255 (26%), Positives = 131/255 (50%), Gaps = 21/255 (8%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
M +ISI + KGG GKTT+ NL +L + GKKVL VD D ++G+D ++
Sbjct: 1 MGVVISIANQKGGVGKTTIALNLGYSLSKFGKKVLLVDIDPQFNLTFALIGMDVINYENK 60
Query: 61 DV---LAGEAKLQDAIYMTQFDNVYVLP-----GAVDWEHVMKAD-PRKLPEVIKSLKGD 111
+V + E+ ++D + +N++++P A + E + + R+L + +K + +
Sbjct: 61 NVGTLMTKESTVEDVLIEIN-ENIHLIPSHLTLSAKEIEILNTYNRERRLEKALKPVYPE 119
Query: 112 YDFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAI 165
YD+I+ID P + + ++++ + + L+ + + + MK+ GL +
Sbjct: 120 YDYIIIDNPPSMGIFLVNSLTASDYVLIPLELSYFGVIGMQLMFNLMKMIKDETNEGLRL 179
Query: 166 LGFILNRYGRTENDIPPDAAQDVMDV----PLLAVIPEDPAIREGTLEGIPAVKYKPESE 221
LG + N++ R + IP +++ ++ P+L IP+ I + EG ++Y P +
Sbjct: 180 LGIVPNKFTR-QTKIPEKRLKELKELYPEAPILTTIPKTVTIEKAQAEGKSILEYDPNGK 238
Query: 222 GAKAFVKLAQEVEKL 236
++AF KLA+EV L
Sbjct: 239 ASRAFEKLAREVISL 253
>pir||C81999 parA family protein NMA0076 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7378849|emb|CAB83392.1|
(AL162752) parA family protein [Neisseria meningitidis
Z2491]
Length = 257
Score = 92.4 bits (226), Expect = 4e-18
Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 18/249 (7%)
Query: 2 ARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVT--L 59
A I++I + KGG GKTT T NL+ +L GK+VL VD D N + G+D + +
Sbjct: 3 ANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLD-PQGNATTGSGIDKASLQSGV 61
Query: 60 HDVLAGEAKLQDAIYMTQFDNVYVLP-----GAVDWEHVMK-ADPRKLPEVIKSLKGDYD 113
+ VL G+A ++ A ++ VL + E V + A +L +K++ DYD
Sbjct: 62 YQVLLGDADVKSAAVRSKEGGYGVLGANRALAGAEIELVQEIAREVRLKNALKAVAEDYD 121
Query: 114 FILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRK------AGLAILG 167
FILIDCP L L ++ +++ ++ E L + +RK L I G
Sbjct: 122 FILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDITG 181
Query: 168 FILNRY---GRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAK 224
+ Y R ++ D+ VIP + + E G+P + Y +++GAK
Sbjct: 182 IVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKGAK 241
Query: 225 AFVKLAQEV 233
A++ LA E+
Sbjct: 242 AYLALADEL 250
>pir||D71290 probable ATP-binding protein (ylxH-1) - syphilis spirochete
>gi|1216385|gb|AAB00552.1| (U36839) orf304 gene product
[Treponema pallidum] >gi|3323014|gb|AAC65678.1|
(AE001244) ATP-binding protein (ylxH-1) [Treponema
pallidum]
Length = 304
Score = 91.7 bits (224), Expect = 7e-18
Identities = 64/245 (26%), Positives = 124/245 (50%), Gaps = 14/245 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
R++ + SGKGG GKT + N+++A G MGKKV+ +D DL +AN+++++ V L+ V
Sbjct: 40 RVVVVTSGKGGVGKTNIATNMAIAYGYMGKKVVLIDADLGLANVNVIMNVVP-QYNLYHV 98
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSL--KGDYDFILIDCP 120
+ + K+ D I T F + ++ GA + + + + I+ L + D I+ID
Sbjct: 99 IKKQKKMSDIIIDTNF-GIKLIAGASGFSKIANLNEEERAAFIQELYSLSETDIIIIDTS 157
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTM-KVGIVLRKAGL--AILGFILNRY---- 173
AG+ + +S + S ++ ++VT E + +TD + I+ + L I+NR
Sbjct: 158 AGVSKNVVSFVASADDVIVVTTAEPTAITDAYGMIKIIATEVDNRDMNLKMIVNRVNSAA 217
Query: 174 -GRTENDIPPDAAQDVMDVPL--LAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLA 230
GR ++ A +++ L L I +D ++ L +P + ++P + + +
Sbjct: 218 EGRRISERMIQIAAQFLNLKLDYLGFIYDDTSVGASVLRQVPFLIHEPRGKASVCLRHIV 277
Query: 231 QEVEK 235
++EK
Sbjct: 278 AKLEK 282
>sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|7446821|pir||S74379 probable ATPase -
Synechocystis sp. (strain PCC 6803)
>gi|1001155|dbj|BAA10297.1| (D64001) put. ATPase
[Synechocystis sp.]
Length = 353
Score = 88.5 bits (216), Expect = 6e-17
Identities = 75/263 (28%), Positives = 120/263 (45%), Gaps = 31/263 (11%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II+I SGKGG GK+TV N++VAL + G V +D D+ N +LG+ V + +
Sbjct: 99 IIAISSGKGGVGKSTVAVNVAVALAQTGAAVGLLDADIYGPNAPTMLGLSGAAVQVQNSP 158
Query: 64 AGEA---KLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLK-----GDYDFI 115
GE I M + V W M L +I+ G D++
Sbjct: 159 QGEVLEPVFNHGIKMVSMGFLIDPDQPVIWRGPM------LNGIIRQFLYQVNWGALDYL 212
Query: 116 LIDCPAG---LQLD-AMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN 171
++D P G QL S ++G A++VT P+ L D + + ++ G+ +LG + N
Sbjct: 213 IVDMPPGTGDAQLTLTQSVPMAG--AVIVTTPQTVSLLDARRGLKMFQQMGVNVLGIVEN 270
Query: 172 RYGRTENDIPP-----------DAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPES 220
D+P + A ++VPLL +P + +REG +G+P V +PES
Sbjct: 271 MSYFIPPDLPDRQYDLFGSGGGEKASKELNVPLLGCVPLEIGLREGGDKGVPIVVSQPES 330
Query: 221 EGAKAFVKLAQEVEKLAGIKAKV 243
AKA +A+++ + A V
Sbjct: 331 ASAKALTAIAKQIAGKVSMAALV 353
>pir||T36875 probable partitioning or sporulation protein - Streptomyces
coelicolor >gi|5738488|emb|CAB52836.1| (AL109848)
putative partitioning or sporulation protein
[Streptomyces coelicolor A3(2)]
Length = 340
Score = 88.2 bits (215), Expect = 8e-17
Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 19/250 (7%)
Query: 2 ARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVTL 59
A+II++ + KGG GKTT T NL AL E G++VL VD D LS+ LGV+ ++D+T+
Sbjct: 85 AKIIAMCNQKGGVGKTTSTINLGAALAEYGRRVLLVDFD-PQGALSVGLGVNPMELDLTV 143
Query: 60 HDVLAGEAKLQDAIYM-TQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKGDY 112
+++L D + + T N+ +LP +D A L +K L DY
Sbjct: 144 YNLLMERGMAADEVLLKTAVPNMDLLPSNIDLSAAEVQLVSEVARESTLQRALKPLMDDY 203
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAIL 166
D+I+IDC L L ++A+ + + ++ E ++ LT+T++ L +
Sbjct: 204 DYIVIDCQPSLGLLTVNALTAAHKVIVPLECEFFALRGVALLTETIEKVQERLNPDLELD 263
Query: 167 GFILNRY-GRT--ENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G + Y RT ++ + D VI E T+ G P Y S GA
Sbjct: 264 GILATMYDSRTVHSREVLARVVEAFDDHVYHTVIGRTVRFPETTVAGEPITTYASNSVGA 323
Query: 224 KAFVKLAQEV 233
A+ +LA+EV
Sbjct: 324 AAYRQLAREV 333
>pir||C70504 hypothetical protein Rv1708 - Mycobacterium tuberculosis (strain
H37RV) >gi|2326751|emb|CAB10965.1| (Z98268) hypothetical
protein Rv1708 [Mycobacterium tuberculosis]
Length = 318
Score = 87.8 bits (214), Expect = 1e-16
Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 19/250 (7%)
Query: 2 ARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVTL 59
A++I++ + KGG GKTT T NL ALGE G++VL VD D LS LGV ++D T+
Sbjct: 64 AKVIAMCNQKGGVGKTTSTINLGAALGEYGRRVLLVDMD-PQGALSAGLGVPHYELDKTI 122
Query: 60 HDVLA-GEAKLQDAIYMTQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKGDY 112
H+VL + D + ++ N+ ++P +D + L + + Y
Sbjct: 123 HNVLVEPRVSIDDVLIHSRVKNMDLVPSNIDLSAAEIQLVNEVGREQTLARALYPVLDRY 182
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAIL 166
D++LIDC L L ++ + + ++ T E ++ LTDT+ L I
Sbjct: 183 DYVLIDCQPSLGLLTVNGLACTDGVIIPTECEFFSLRGLALLTDTVDKVRDRLNPKLDIS 242
Query: 167 GFILNRYG-RTEN--DIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G ++ RY RT N ++ + D+ VI E ++ G P + P+S GA
Sbjct: 243 GILITRYDPRTVNSREVMARVVERFGDLVFDTVITRTVRFPETSVAGEPITTWAPKSAGA 302
Query: 224 KAFVKLAQEV 233
A+ LA+E+
Sbjct: 303 LAYRALAREL 312
>pir||E71274 probable ATP-binding protein (ylxH-2) - syphilis spirochete
>gi|3323165|gb|AAC65818.1| (AE001255) ATP-binding
protein (ylxH-2) [Treponema pallidum]
Length = 378
Score = 87.0 bits (212), Expect = 2e-16
Identities = 51/148 (34%), Positives = 79/148 (52%), Gaps = 3/148 (2%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
+II I SGKGG GK+ + ANLS+ALG+ GKKV+ D DL +NL L LG +
Sbjct: 2 QIIPIASGKGGVGKSLLAANLSIALGQAGKKVVVADLDLGASNLHLALGQKGNKHGVGTF 61
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPG--AVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCP 120
L G + ++ + T + NVY++PG + +K R+ + LK D++++D
Sbjct: 62 LMGASSFEEIMVPTGYPNVYLVPGDSEIPGFAALKVSQRR-ALTVGLLKTHADYVVLDLG 120
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCL 148
AG L + L ++VT P +S +
Sbjct: 121 AGTHLGVLEFFLLSSRGIIVTEPAVSAV 148
>sp|P40742|YLXH_BACSU HYPOTHETICAL 33.2 KD PROTEIN IN FLHF-CHEB INTERGENIC REGION
(ORF298) >gi|2127066|pir||I40434 flagellar biosynthesis
switch protein homolog ylxH - Bacillus subtilis
>gi|580903|emb|CAA52034.1| (X73682) orf298 [Bacillus
subtilis] >gi|2634013|emb|CAB13514.1| (Z99112) similar
to flagellar biosynthesis switch protein [Bacillus
subtilis]
Length = 298
Score = 85.8 bits (209), Expect = 4e-16
Identities = 48/152 (31%), Positives = 84/152 (54%), Gaps = 5/152 (3%)
Query: 2 ARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHD 61
A+ ++++SGKGG GK+ +T N+++AL + GKKVL +D D+ M N+ +++G + T+ D
Sbjct: 31 AKTLAVISGKGGVGKSNITLNMALALQDKGKKVLLIDLDIGMGNIDILIG-NSSSATIID 89
Query: 62 VLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLK---GDYDFILID 118
VL L ++ + Y+ G + + + D RK L +D++L D
Sbjct: 90 VLTDRKPLLQSLSVGPKGLRYI-SGGTGLDVMFQLDQRKWTFFANELSHALSQFDYVLFD 148
Query: 119 CPAGLQLDAMSAMLSGEEALLVTNPEISCLTD 150
AGL D + +LS E+ L++T PE + + D
Sbjct: 149 MGAGLSKDQLPFILSAEDILIITTPEPTAIMD 180
>gb|AAB53135.1| (L39923) ORF278; hypothetical 30.3 Kd protein; similar to
hypothetical protein 27.5 kd in SPO0J-GIDB intergenic
region of B. subtilis and to 27.5 kd protein in
GIDB-UNCI intergenic region of P. putida; putative
[Mycobacterium leprae]
Length = 278
Score = 85.4 bits (208), Expect = 6e-16
Identities = 71/251 (28%), Positives = 116/251 (45%), Gaps = 21/251 (8%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVD---VTL 59
R+ +I + KGG GKTT NL+ AL G K L +D D N S LG+ + +
Sbjct: 18 RLFTIANQKGGVGKTTTAVNLAAALALQGLKALVIDLD-PQGNASTALGISNRQSRVFSS 76
Query: 60 HDVLAGEAKLQDAIYMTQF-DNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKG-D 111
+DVL GE LQ A+ + + + ++ LP A+D M A +L + L D
Sbjct: 77 YDVLIGEVSLQTALRCSPYNERLFCLPAAIDLAGAEIELVSMVARENRLRTALTELNDLD 136
Query: 112 YDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCL--TDTMKVGIVLRKA----GLAI 165
+D++ IDCP L L ++A+++ E ++ E L + I + KA L +
Sbjct: 137 FDYVFIDCPPSLGLLTINALVAAPEVIIPIQCEYYALEGVSQLMCNIEMVKAHLNPQLEV 196
Query: 166 LGFILNRY-GRTE--NDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEG 222
IL Y GRT+ + + + + L VIP + E + + Y P S G
Sbjct: 197 TTVILTMYDGRTKLADQVAEEVRRYFGTKVLQTVIPRSVKVSEAPGYSMTIIDYDPGSRG 256
Query: 223 AKAFVKLAQEV 233
A +++ ++E+
Sbjct: 257 AMSYLDASREL 267
>gb|AAF16005.1|AF187159_5 (AF187159) ParA [Streptomyces coelicolor A3(2)]
Length = 357
Score = 85.4 bits (208), Expect = 6e-16
Identities = 71/252 (28%), Positives = 116/252 (45%), Gaps = 25/252 (9%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDV-TLH 60
R++ + + KGG GKTT T NL+ +L G +VL VD D N S LG+D DV +++
Sbjct: 81 RVMVVANQKGGVGKTTTTVNLAASLALHGARVLVVDLD-PQGNASTALGIDHHADVPSIY 139
Query: 61 DVLAGEAKLQDAIY-MTQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKGDYD 113
DVL L + + + + ++ P +D + A +L I + + D
Sbjct: 140 DVLVESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLQRAITAYEQPLD 199
Query: 114 FILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLA--------- 164
+ILIDCP L L ++A+++G+E L+ E L +G +LR L
Sbjct: 200 YILIDCPPSLGLLTVNALVAGQEVLIPIQCEYYALEG---LGQLLRNVDLVRGHLNPTLH 256
Query: 165 ILGFILNRY-GRTE--NDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESE 221
+ +L Y GRT + + + + L IP I E G + Y P S
Sbjct: 257 VSTILLTMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSYGQTVLTYDPGSS 316
Query: 222 GAKAFVKLAQEV 233
GA ++++ A+E+
Sbjct: 317 GALSYLEAAREI 328
>pir||A72319 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981442|gb|AAD35987.1|AE001755_10 (AE001755)
conserved hypothetical protein [Thermotoga maritima]
Length = 275
Score = 84.7 bits (206), Expect = 1e-15
Identities = 64/247 (25%), Positives = 118/247 (46%), Gaps = 20/247 (8%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
IIS++SGKGG GK+ + NLS+AL E G +VL +D D+ ++ ++LG TL D
Sbjct: 15 IISVLSGKGGVGKSVIAVNLSLALKEKGLRVLLLDADVGFGSVEILLGF-MAPKTLKDFF 73
Query: 64 AGEAKLQDAIYMTQFDNVYVLPGAVDWEHVM---KADPRKLPEVIKSLKGDYDFILIDCP 120
+++D ++ T++ V VL +D E ++ D R+ + L YD+++ID P
Sbjct: 74 KSNVRIEDIVFETKY-GVDVLSSGIDMEDLILFNLGDRRRFFDEFARLLRKYDYLVIDFP 132
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLA------ILGFILNRYG 174
G + + + +LVT+PE + + +T + +L G+ ++ + N
Sbjct: 133 PGYNENLDQFYIQSDFLILVTSPEPTSIINTYTLIKLLSVKGITPEEIFLVMNMVRN--- 189
Query: 175 RTENDIPPDAAQDVMD------VPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVK 228
E + D + V++ + VI ED ++ P V+ S+ + A
Sbjct: 190 MKEGRLAADRLKRVVERFVGFTIKNYFVIKEDQVVQRSVFLQEPFVRSHSRSQPSLAIYG 249
Query: 229 LAQEVEK 235
L +++ K
Sbjct: 250 LREKILK 256
>pir||A82577 chromosome partitioning protein XF2282 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107443|gb|AAF85081.1|AE004040_6 (AE004040)
chromosome partitioning protein [Xylella fastidiosa]
Length = 264
Score = 84.7 bits (206), Expect = 1e-15
Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 19/250 (7%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDV--T 58
MARII+I + KGG GKTT NL+ L ++VL VD D + N ++ GVD + +
Sbjct: 1 MARIIAIANQKGGVGKTTTAVNLAAGLVRASERVLLVDLD-SQGNATMGSGVDKNGLISS 59
Query: 59 LHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWE----HVMKADPR--KLPEVIKSLKGDY 112
+VL GE + ++ + +LPG +D +M+ R +L + ++ +Y
Sbjct: 60 TCEVLLGERSVAESRARAP-EGFDLLPGNIDLTAAAIQLMEQSEREQRLKRALSPIRHEY 118
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAIL 166
DFILIDCP L L ++A+ + + ++ E +S L +T++ V L I
Sbjct: 119 DFILIDCPPALSLLTVNALTAADSVIVPMQCEYYALEGLSALLETIEALRVNLNPRLEIE 178
Query: 167 GFILNRY---GRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G + + N + + + D ++P + + E G V Y S G+
Sbjct: 179 GVLRTMFDIRNNLANAVSTELTEHFGDKVFRTIVPRNVRLAEAPSYGKSIVGYDGASRGS 238
Query: 224 KAFVKLAQEV 233
A++ LA EV
Sbjct: 239 VAYLGLANEV 248
>sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|2129169|pir||D64335
nucleotide-binding protein - Methanococcus jannaschii
>gi|1591007|gb|AAB98271.1| (U67483) nucleotide-binding
protein [Methanococcus jannaschii]
Length = 290
Score = 84.3 bits (205), Expect = 1e-15
Identities = 80/257 (31%), Positives = 123/257 (47%), Gaps = 30/257 (11%)
Query: 5 ISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLA 64
I I+SGKGG GK+TVT NL+ AL MGKKV +D D+ N+ +LGV++ +A
Sbjct: 42 IVILSGKGGVGKSTVTVNLAAALNLMGKKVGVLDADIHGPNIPKMLGVENT-----QPMA 96
Query: 65 GEAKLQDAIYMTQFDNV---YVLPGAVDWEHVMKADPRKLPEVIKSLK----GDYDFILI 117
G A + + + Y+LP D V+ P+ + + L G+ D++LI
Sbjct: 97 GPAGIFPIVTKDGIKTMSIGYLLPD--DKTPVIWRGPKVSGAIRQFLSDVVWGELDYLLI 154
Query: 118 DCPAGL---QLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNR-- 172
D P G QL M ++ + A++VT PE + D K ++ + + I+G I N
Sbjct: 155 DTPPGTGDEQLTIMQSIPDIDGAIIVTTPEEVSVLDVKKSIMMAKMLNIPIIGIIENMSG 214
Query: 173 ----YGRTENDI----PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAK 224
Y DI + A + V L IP D RE + +GIP V + + ++
Sbjct: 215 FVCPYCNKVVDIFGRGGGEKAAKELGVEFLGRIPLDIKAREASDKGIPMVLL--DCKASE 272
Query: 225 AFVKLAQE-VEKLAGIK 240
F K+ + VEK+ G K
Sbjct: 273 EFKKIVKRIVEKVEGKK 289
>pir||G81980 hypothetical protein NMA0611 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379346|emb|CAB83901.1|
(AL162753) hypothetical protein NMA0611 [Neisseria
meningitidis Z2491]
Length = 375
Score = 84.3 bits (205), Expect = 1e-15
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II++ SGKGG GK+T TANL+ A+ MG +V +D DL + +LGVDD +
Sbjct: 114 IIAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQK 173
Query: 64 AGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCPAG- 122
+ D I + + AV W M + + + +S + D++ ID P G
Sbjct: 174 LIPVESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQ-QLMFQSEWDEVDYLFIDLPPGT 232
Query: 123 --LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN-------RY 173
+QL +S + +++VT P+ L D K + RK + ILG + N
Sbjct: 233 GDIQL-TLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICTNC 291
Query: 174 GRTENDIPPDAAQDV---MDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLA 230
G +E D +D+ ++VPLL +P +RE G PA + A+ + A
Sbjct: 292 GHSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIARIYTDAA 351
Query: 231 QEV 233
++
Sbjct: 352 FQI 354
>pir||F81036 Mrp/NBP35 family protein NMB1846 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227102|gb|AAF42181.1| (AE002534) Mrp/NBP35 family
protein [Neisseria meningitidis MC58]
Length = 359
Score = 83.9 bits (204), Expect = 2e-15
Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 15/252 (5%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II++ SGKGG GK+T TANL+ A+ MG +V +D DL + +LGVDD +
Sbjct: 98 IIAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQK 157
Query: 64 AGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDCPAG- 122
+ D I + + AV W M + + + +S + D++ ID P G
Sbjct: 158 LIPVESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQ-QLMFQSEWDEVDYLFIDLPPGT 216
Query: 123 --LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN-------RY 173
+QL +S + +++VT P+ L D K + RK + ILG + N
Sbjct: 217 GDIQL-TLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICTNC 275
Query: 174 GRTENDIPPDAAQDV---MDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLA 230
G +E D +D ++VPLL +P +RE G PA + A+ + A
Sbjct: 276 GHSEALFGTDGGKDFAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIARIYTDAA 335
Query: 231 QEVEKLAGIKAK 242
++ K K
Sbjct: 336 FQIALSIADKGK 347
>sp|Q57853|Y410_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0410 >gi|2128304|pir||B64351
hypothetical protein MJ0410 - Methanococcus jannaschii
>gi|1591116|gb|AAB98399.1| (U67493) hypothetical protein
[Methanococcus jannaschii]
Length = 264
Score = 83.5 bits (203), Expect = 2e-15
Identities = 62/232 (26%), Positives = 118/232 (50%), Gaps = 18/232 (7%)
Query: 11 KGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLAGEAKLQ 70
+GGTGKTTV AN + L + K +L +D D+ +++ G++D + L+ LAG++ ++
Sbjct: 9 QGGTGKTTVAANFAYILSQSVKTIL-IDCDIYGGTTAVLFGLEDKEHNLNTYLAGDSAIE 67
Query: 71 DAIYMTQFDNVYVLPGAVDWE-HVMKADPRKLPEVIKSLKGDYDFILIDCPAGLQLDAMS 129
D IY +D++ ++ V + K+D + ++K L+ +YD I+ D P + D
Sbjct: 68 DIIY--HYDDLAIIHTDVSSKVFGYKSDLNRFETLVKELEEEYDVIIYDFPPNITEDNPL 125
Query: 130 AMLSGE-----EALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDIPPDA 184
GE + ++V I + +++K ++ G+ + G I+N+Y R DI
Sbjct: 126 IGYVGEFELVNKVVVVGEDSIPSIVNSLKTIELITDLGIGLTGIIVNKY-RGLTDI---- 180
Query: 185 AQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKL 236
+++D ++ V+P D + +E P VK K ++ K LA E+ +
Sbjct: 181 -SEIID-DVIGVLPYDQNVERQWVESTPIVKIK--TKFTKEMTALANEIASI 228
>gi|10954513 SOJ protein [Methanococcus jannaschii]
>gi|2496226|sp|Q60283|YZ24_METJA HYPOTHETICAL PROTEIN
MJECL24 >gi|2129287|pir||G64512 SOJ protein homolog -
Methanococcus jannaschii plasmid pURB800
>gi|1522661|gb|AAC37095.1| (L77118) SOJ protein
[Methanococcus jannaschii]
Length = 259
Score = 83.1 bits (202), Expect = 3e-15
Identities = 67/255 (26%), Positives = 123/255 (47%), Gaps = 28/255 (10%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSL-VLGV-------DDV 55
+ISI + KGG GKTT+ NLS L E G L +D D NLS +LG+ ++
Sbjct: 3 VISIANQKGGVGKTTIALNLSFTLAEKGYDTLVIDLD-PQFNLSFGILGMKLLDYADKNI 61
Query: 56 DVTLHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMK------ADPRKLPEVIKSLK 109
+ L + +++++I D + ++P + V K A KL +I +K
Sbjct: 62 GILLSKNSVKKKEIEESIIKIN-DKLDLIPSHLQLSAVEKMLVNAYAREMKLKNIINQIK 120
Query: 110 GDYDFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTM-KVGIVLRKAG 162
+YD+I+ID L L ++++++ + ++ P + + DT+ ++
Sbjct: 121 ENYDYIIIDNAPSLGLFLINSLVASDYIIIPCEPSYFSIAGVQLMLDTVEEIKESNLNPK 180
Query: 163 LAILGFILNRYGRTENDIPPDAAQDVM----DVPLLAVIPEDPAIREGTLEGIPAVKYKP 218
L +LGFI N+Y + ++ IP + + ++P++ VIP + + EG P K+
Sbjct: 181 LKVLGFIFNKYSK-QSKIPQKRLEQLKQLYPNIPVIGVIPRTITVEKAEREGKPVFKFDA 239
Query: 219 ESEGAKAFVKLAQEV 233
+ + AF +LA+ V
Sbjct: 240 NNPASVAFSELAEWV 254
>gb|AAC03484.1| (AF031590) Soj-like [Streptomyces coelicolor A3(2)]
Length = 255
Score = 82.7 bits (201), Expect = 4e-15
Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 25/248 (10%)
Query: 7 IVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDV-TLHDVLA 64
+ + KGG GKTT T NL+ +L G +VL VD D N S LG+D DV +++DVL
Sbjct: 3 VANQKGGVGKTTTTVNLAASLALHGARVLVVDLD-PQGNASTALGIDHHADVPSIYDVLV 61
Query: 65 GEAKLQDAIY-MTQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKGDYDFILI 117
L + + + + ++ P +D + A +L I + + D+ILI
Sbjct: 62 ESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLQRAITAYEQPLDYILI 121
Query: 118 DCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLA---------ILGF 168
DCP L L ++A+++G+E L+ E L +G +LR L +
Sbjct: 122 DCPPSLGLLTVNALVAGQEVLIPIQCEYYALEG---LGQLLRNVDLVRGHLNPTLHVSTI 178
Query: 169 ILNRY-GRTE--NDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKA 225
+L Y GRT + + + + L IP I E G + Y P S GA +
Sbjct: 179 LLTMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSYGQTVLTYDPGSSGALS 238
Query: 226 FVKLAQEV 233
+++ A+E+
Sbjct: 239 YLEAAREI 246
>sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|7446831|pir||G70364 conserved hypothetical
protein aq_737 - Aquifex aeolicus
>gi|2983325|gb|AAC06915.1| (AE000705) hypothetical
protein [Aquifex aeolicus]
Length = 364
Score = 82.7 bits (201), Expect = 4e-15
Identities = 78/261 (29%), Positives = 126/261 (47%), Gaps = 36/261 (13%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II++ SGKGG GK+TV ANL+VAL ++G KV +D D+ ++ + G+ VT+
Sbjct: 114 IIAVGSGKGGVGKSTVAANLAVALSQLGYKVGLLDADVYGPSVPTLFGLKGERVTVDQFQ 173
Query: 64 A-------GEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLK-GDYDFI 115
G L + D + G + +MKA L E + S K G+ DF+
Sbjct: 174 RIIPVEKYGLKILSIGFMLPSEDTPIIWRGPM----LMKA----LTEFLFSTKWGNLDFL 225
Query: 116 LIDCPAG---LQLD-AMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN 171
++D P G +Q+ A + L+G A++VT P+ L D K + R+ + +LG I N
Sbjct: 226 VMDLPPGTGDVQITLAQNVELTG--AVVVTTPQDVALADVKKAVSMFREVNIPVLGVIEN 283
Query: 172 R------------YGRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPE 219
Y + + A + + +L IP DP + E + +G P V P+
Sbjct: 284 MAYFICPSDKQKYYIFGKGKVAEFA--NAYGLKILGSIPIDPEVAEKSDKGEPIVISHPD 341
Query: 220 SEGAKAFVKLAQEVEKLAGIK 240
SE AKAF+ +A+ + ++ K
Sbjct: 342 SEVAKAFLSIAKVLSQVVESK 362
>pir||H70404 cell division inhibitor (septum placement) minD1 - Aquifex aeolicus
>gi|2983660|gb|AAC07226.1| (AE000729) septum
site-determining protein MinD [Aquifex aeolicus]
Length = 278
Score = 82.7 bits (201), Expect = 4e-15
Identities = 48/175 (27%), Positives = 95/175 (53%), Gaps = 7/175 (4%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
R IS+ SGKGG GKT V+ N+ L E GK+VL DGDL ++N+ L+ G+ L D+
Sbjct: 23 RYISVSSGKGGVGKTLVSINIGEILSERGKRVLIFDGDLGLSNVHLMYGIAPTK-DLSDL 81
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSL----KGDYDFILID 118
+ G A +++ + + +++Y + G ++ + +L +++ L + ++D+++ID
Sbjct: 82 IKGFATIEE-LPVKVNEHLYFISGGSGFQELADLPKERLTTIVQKLYEYAEDNFDYVVID 140
Query: 119 CPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK-VGIVLRKAGLAILGFILNR 172
P G+ + + +++T PE + L D + ++ R+ G+ I+N+
Sbjct: 141 TPPGIHRTTVMLTSCADIPIILTTPEPTALMDAYALIKVINREEGVENFYVIINK 195
>pir||T36573 probable partitioning or sporulation protein - Streptomyces
coelicolor >gi|4808382|emb|CAB42705.1| (AL049826)
putative partitioning or sporulation protein
[Streptomyces coelicolor A3(2)]
Length = 275
Score = 82.7 bits (201), Expect = 4e-15
Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 25/248 (10%)
Query: 7 IVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDV-TLHDVLA 64
+ + KGG GKTT T NL+ +L G +VL VD D N S LG+D DV +++DVL
Sbjct: 3 VANQKGGVGKTTTTVNLAASLALHGARVLVVDLD-PQGNASTALGIDHHADVPSIYDVLV 61
Query: 65 GEAKLQDAIY-MTQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKGDYDFILI 117
L + + + + ++ P +D + A +L I + + D+ILI
Sbjct: 62 ESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESRLQRAITAYEQPLDYILI 121
Query: 118 DCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLA---------ILGF 168
DCP L L ++A+++G+E L+ E L +G +LR L +
Sbjct: 122 DCPPSLGLLTVNALVAGQEVLIPIQCEYYALEG---LGQLLRNVDLVRGHLNPTLHVSTI 178
Query: 169 ILNRY-GRTE--NDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKA 225
+L Y GRT + + + + L IP I E G + Y P S GA +
Sbjct: 179 LLTMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSYGQTVLTYDPGSSGALS 238
Query: 226 FVKLAQEV 233
+++ A+E+
Sbjct: 239 YLEAAREI 246
>gb|AAF32413.1| (AF069392) flagellar biosynthesis protein FlhG [Vibrio
parahaemolyticus]
Length = 295
Score = 81.9 bits (199), Expect = 6e-15
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 15/244 (6%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
+ ++I++ GKGG GK+ VT L++ + GKKV+ +D DL +AN+ ++LG+ L
Sbjct: 21 LTKVIAVTGGKGGVGKSNVTLGLAICMARQGKKVMVLDADLGLANVDVMLGIRP-KRNLG 79
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLP---GAVDWEHVMKADPRKLPEVIKSLKGDYDFILI 117
VLAGE +L+DAI + + ++P G + A L SL+ + D +LI
Sbjct: 80 HVLAGECELKDAIVEGPY-GIKIIPATSGTQSMTELSHAQHAGLIRAFGSLEDEMDILLI 138
Query: 118 DCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRK----AGLAILGFILNRY 173
D AG+ +S + ++ ++V E + +TD + +L K ++ ++ Y
Sbjct: 139 DTAAGISDMVISFSRAAQDVVVVVCDEPTSITDAYALIKLLSKEHQVQRFKVVANMVRSY 198
Query: 174 --GR---TENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVK 228
GR + + + +V + L+A IP D +R+ V P S A A
Sbjct: 199 REGRELFAKLTLVTERFLNV-SLELVACIPLDDKVRQAVKRQKIVVDAFPRSPAALAISS 257
Query: 229 LAQE 232
LA +
Sbjct: 258 LANK 261
>pir||C81422 probable ATP-binding protein Cj0063c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6967561|emb|CAB72550.1|
(AL139074) putative ATP-binding protein [Campylobacter
jejuni]
Length = 288
Score = 81.5 bits (198), Expect = 8e-15
Identities = 50/149 (33%), Positives = 87/149 (57%), Gaps = 6/149 (4%)
Query: 5 ISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLA 64
I+I SGKGG GK+T++ANL+ L G KV D D+ +ANL ++L V LH VL
Sbjct: 26 IAITSGKGGVGKSTISANLANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLH-VLR 84
Query: 65 GEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVI---KSLKGDYDFILIDCPA 121
GE L+D + + N++++PG + ++K + + + E S+ + DF++ID A
Sbjct: 85 GECSLEDILIEVK-PNLWLIPGE-SGDEILKYNDKNIYERFLNQASILDELDFLIIDTGA 142
Query: 122 GLQLDAMSAMLSGEEALLVTNPEISCLTD 150
G+ + ++ + +E ++VT P+ + +TD
Sbjct: 143 GIGGNILNFLEMADEVIVVTVPDPAAITD 171
>pir||S72958 hypothetical protein u0247b - Mycobacterium leprae
>gi|467153|gb|AAA50917.1| (U00021) u0247b [Mycobacterium
leprae]
Length = 354
Score = 81.1 bits (197), Expect = 1e-14
Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 19/249 (7%)
Query: 2 ARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVTL 59
A+++++ + KGG GKTT T NL AL E G++VL VD D LS LGV ++D T+
Sbjct: 100 AKVVAMCNQKGGVGKTTSTINLGAALTEFGRRVLLVDID-PQGALSAGLGVPHYELDRTI 158
Query: 60 HDVLAGE-AKLQDAIYMTQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKGDY 112
H+++ + D + T+ + ++P +D + L + + Y
Sbjct: 159 HNLMVEPLVSIDDVLIHTRVRYLDLVPSNIDLSAAEIQLVNEVGREQTLARALHPVLDRY 218
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAIL 166
D++LIDC L L ++ + E ++ T E ++ LTDT+ L I
Sbjct: 219 DYVLIDCQPSLGLLTVNGLACAEGVVIPTECEFFSLRGLALLTDTVDKVRDRLNPKLEIS 278
Query: 167 GFILNRYG-RTEN--DIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G ++ RY RT N ++ + D+ VI E ++ G P + P+S GA
Sbjct: 279 GILITRYDPRTVNAREVMARVVERFGDLVFDTVITRTVRFPETSVAGEPITTWAPKSGGA 338
Query: 224 KAFVKLAQE 232
+A+ LA E
Sbjct: 339 RAYRALACE 347
>sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|7446819|pir||H71085 probable MRP
protein - Pyrococcus horikoshii
>gi|3257363|dbj|BAA30046.1| (AP000004) 295aa long
hypothetical MRP protein [Pyrococcus horikoshii]
Length = 295
Score = 81.1 bits (197), Expect = 1e-14
Identities = 77/259 (29%), Positives = 132/259 (50%), Gaps = 25/259 (9%)
Query: 5 ISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLA 64
I+++SGKGG GK+TV NL+ AL +MG V +D D+ N++ +LGVD +V
Sbjct: 33 IAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVDKEEVYAEKFDD 92
Query: 65 GEAKL--QDAIYMTQFDNVYVLPGAV---DWEHVMKADPRKLPEVIKSLKGD-----YDF 114
G ++ +M Q + V+ + + + V+ P + + IK L GD DF
Sbjct: 93 GHFEMIPPTTDFMGQVTPIKVMSMGMMVPEDQPVIWRGP-LVTKAIKQLLGDVKWGSLDF 151
Query: 115 ILIDCPAGLQLDAMSAM--LSGEEALLVTNPEISCLTDTMKVGIVLRK------AGLAIL 166
++ID P G + ++ + + + A++VT P+ L DT K +++K A + +
Sbjct: 152 MIIDFPPGTGDEILTVVQSIKLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYVAVVENM 211
Query: 167 GFILNRYGRTENDIPPDAAQDVM----DVPLLAVIPEDPAIREGTLEGIPAVKYKPESEG 222
+++ + + DI + + + V L IP D RE + GIP V Y+ ++
Sbjct: 212 SYLICPHCGNKIDIFGEGGGEKLAQKEGVDFLGKIPIDLKAREASDLGIPIVLYE-DTPA 270
Query: 223 AKAFVKLAQE-VEKLAGIK 240
AKAF++LA++ V KL IK
Sbjct: 271 AKAFMELAEKLVNKLKEIK 289
>pir||D81426 parA family protein Cj0100 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967594|emb|CAB72584.1|
(AL139074) parA family protein [Campylobacter jejuni]
Length = 261
Score = 81.1 bits (197), Expect = 1e-14
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 30/261 (11%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGV--DDVDVT 58
M+ II+I + KGG GKTT NL+ +L KKVL +D D AN + LG ++ +
Sbjct: 1 MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVD-PQANATTGLGFNRNNYEYN 59
Query: 59 LHDVLAGEAKLQDAIYMTQFDNVYVLP---GAVDWEHVMKADPRK-----LPEVIKSLKG 110
++ V G KL D I T+ +++ P G V E + L I+ +
Sbjct: 60 IYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGENNEKKMLLKNQIQEVID 119
Query: 111 DYDFILIDCPAGLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLA 164
+YDFI+ID P L ++A + + ++ E ++ + +T+K+ + L
Sbjct: 120 EYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGVAMVLNTIKIIKKTINSKLR 179
Query: 165 ILGFILNRYGRTENDIPPDAAQDVM------------DVPLLAVIPEDPAIREGTLEGIP 212
+ GF+ Y ++N++ D D+ + VIP + + E G P
Sbjct: 180 VRGFLPTMYS-SQNNLSKDVVDDLKQNFKKQLFTINGNEDDFIVIPRNVKLAESPSFGKP 238
Query: 213 AVKYKPESEGAKAFVKLAQEV 233
+ Y +S G+ A+ LA +
Sbjct: 239 IILYDIKSPGSVAYQNLAYSI 259
>pir||F70851 probable parB protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2808703|emb|CAA16231.1| (AL021426) parB
[Mycobacterium tuberculosis]
Length = 347
Score = 80.8 bits (196), Expect = 1e-14
Identities = 66/251 (26%), Positives = 116/251 (45%), Gaps = 21/251 (8%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVD---VTL 59
R+++I + KGG GKTT N++ AL G K L +D D N S LG+ D +
Sbjct: 85 RVLTIANQKGGVGKTTTAVNIAAALAVQGLKTLVIDLD-PQGNASTALGITDRQSGTPSS 143
Query: 60 HDVLAGEAKLQDAIYMT-QFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKG-D 111
+++L GE L A+ + + ++ +P +D M A +L + +L D
Sbjct: 144 YEMLIGEVSLHTALRRSPHSERLFCIPATIDLAGAEIELVSMVARENRLRTALAALDNFD 203
Query: 112 YDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV--GIVLRKA----GLAI 165
+D++ +DCP L L ++A+++ E ++ E L ++ I + KA L +
Sbjct: 204 FDYVFVDCPPSLGLLTINALVAAPEVMIPIQCEYYALEGVSQLMRNIEMVKAHLNPQLEV 263
Query: 166 LGFILNRY-GRTE--NDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEG 222
IL Y GRT+ + + + Q L VIP + E + + Y P S G
Sbjct: 264 TTVILTMYDGRTKLADQVADEVRQYFGSKVLRTVIPRSVKVSEAPGYSMTIIDYDPGSRG 323
Query: 223 AKAFVKLAQEV 233
A +++ ++E+
Sbjct: 324 AMSYLDASREL 334
>dbj|BAB06155.1| (AP001515) unknown conserved protein [Bacillus halodurans]
Length = 288
Score = 80.8 bits (196), Expect = 1e-14
Identities = 59/239 (24%), Positives = 117/239 (48%), Gaps = 14/239 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++I++VSGKGG GK+ V+ N ++ L +KV +D DL M NL +++G+ + D+
Sbjct: 24 KVIAVVSGKGGVGKSNVSLNFALTLSRQNQKVALIDLDLGMGNLDILMGLSP-SYHIIDM 82
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLP---EVIKSLKGDYDFILIDC 119
+ E + D I + + + G +++ + R++ + ++SL YD+I++D
Sbjct: 83 IKRELTIWD-IAEQGPEGITYIAGGSGLSELVELNERQMERFFQQLESLGAIYDYIILDM 141
Query: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGL---AILGFILNRYGRT 176
AG +++ +LS E +VT PE + +TD + + K + IL + +
Sbjct: 142 GAGATAESLRFILSAHEIFVVTTPEPTSITDAYAMVKYICKEPIENPEILLIVNRAESKR 201
Query: 177 ENDIPPDAAQDVM------DVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKL 229
E + + V+ D+ L +P+D + + P V + P+++ + A KL
Sbjct: 202 EGEQTAANFKRVVSHFLKKDIHSLGYLPQDSHVVKAVKAQAPFVLHAPQAKASMAMGKL 260
>sp|Q58334|Y924_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0924 >gi|2127790|pir||D64415
capsular polysaccharide biosynthesis protein homolog -
Methanococcus jannaschii >gi|1591597|gb|AAB98928.1|
(U67536) capsular polysaccharide biosynthesis protein,
putative (cap8B) [Methanococcus jannaschii]
Length = 263
Score = 80.4 bits (195), Expect = 2e-14
Identities = 63/251 (25%), Positives = 122/251 (48%), Gaps = 22/251 (8%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++I+ KGGTGKT +TAN + AL + GKK+L +DGD+ +LS +L V ++ L D+
Sbjct: 9 KVITFSIAKGGTGKTIITANAAAALAKKGKKILLIDGDVGSKSLSHLLNVKS-NIFLADI 67
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLK--GDYDFILIDCP 120
+ E ++DAI T +N+ +L +K D ++K K GDYD++ ID P
Sbjct: 68 IEEERPIKDAIVNTPIENIELLAVGKSLADYLKFD----INILKRFKELGDYDYVFIDAP 123
Query: 121 A-GLQLDAMSAMLSGEEALLVTN-----PEISCLTDTMKVGIVLRKAGLAILGFILNRYG 174
+ ++ A+ + + V + P + +T+ +G ++ A GFI+N+
Sbjct: 124 STSSGVETYLALGLSDYFIPVLDYTAFGPSLQGAINTIVIGKNYLESTPA--GFIINK-- 179
Query: 175 RTENDIPPDAAQD---VMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQ 231
D+P D ++ + +++I ++ + + + + + + K+
Sbjct: 180 --AEDLPESVINDIKKILGLECISIIHKNSLVEQSYAKKEIVYLTSSDKKFVEEIDKIVD 237
Query: 232 EVEKLAGIKAK 242
+EKL +K +
Sbjct: 238 ALEKLKEVKER 248
>sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|7446833|pir||H70508 probable mrp protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|3261828|emb|CAB10925.1| (Z98260) mrp [Mycobacterium
tuberculosis]
Length = 390
Score = 80.0 bits (194), Expect = 2e-14
Identities = 68/254 (26%), Positives = 112/254 (43%), Gaps = 34/254 (13%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD----VD 56
+ R+ ++ SGKGG GK+TVT NL+ A+ G + +D D+ ++ ++G D V+
Sbjct: 125 LTRVYAVASGKGGVGKSTVTVNLAAAMAVRGLSIGVLDADIHGHSIPRMMGTTDRPTQVE 184
Query: 57 VTLHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFIL 116
+ +A + K+ TQ + V G + + +A + L +V GD D +L
Sbjct: 185 SMILPPIAHQVKVISIAQFTQGNTPVVWRGPM----LHRALQQFLADV---YWGDLDVLL 237
Query: 117 IDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG 174
+D P G A+S ++ E L+VT P+++ + G + + I+G + N G
Sbjct: 238 LDLPPGTGDVAISVAQLIPNAELLVVTTPQLAAAEVAERAGSIALQTRQRIVGVVENMSG 297
Query: 175 RTENDIPPDAAQDVM------------------DVPLLAVIPEDPAIREGTLEGIPAVKY 216
T +P V DVPLL IP DPA+ G+P V
Sbjct: 298 LT---LPDGTTMQVFGEGGGRLVAERLSRAVGADVPLLGQIPLDPALVAAGDSGVPLVLS 354
Query: 217 KPESEGAKAFVKLA 230
P+S K +A
Sbjct: 355 SPDSAIGKELHSIA 368
>sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|7446823|pir||G64545 ATP-binding protein -
Helicobacter pylori (strain 26695)
>gi|2313292|gb|AAD07271.1| (AE000540) ATP-binding
protein (mpr) [Helicobacter pylori 26695]
Length = 412
Score = 79.6 bits (193), Expect = 3e-14
Identities = 66/246 (26%), Positives = 119/246 (47%), Gaps = 20/246 (8%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
++ I SGKGG GK+T + NLS+AL + +KV +D D+ N+ ++G+ DV +
Sbjct: 143 VVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQSADVIMDPSG 202
Query: 64 AGEAKLQD-AIYMTQFDNVYVLPGAVDWE--HVMKADPRKLPEVIKSLKGDYDFILIDCP 120
L+ + + +Y ++ W +M+A + L ++I GD D +++D P
Sbjct: 203 KKLIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDII---WGDLDVLVVDMP 259
Query: 121 AGLQLDAMSAMLSG---EEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN------ 171
G DA + + VT P+I L D + + +K + I G + N
Sbjct: 260 PGTG-DAQLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHIPIAGIVENMGSFVC 318
Query: 172 RYGRTENDI-PPDAAQDVMD---VPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFV 227
+ + E++I ++ ++++ +LA +P +P +R G G P V P S AK F
Sbjct: 319 EHCKKESEIFGSNSMSELLEAYHTQILAKLPLEPKVRLGGDRGEPIVISHPNSVSAKIFE 378
Query: 228 KLAQEV 233
K+AQ++
Sbjct: 379 KMAQDL 384
>pir||H71962 hypothetical protein jhp0193 - Helicobacter pylori (strain J99)
>gi|4154712|gb|AAD05776.1| (AE001457) putative
[Helicobacter pylori J99]
Length = 368
Score = 79.2 bits (192), Expect = 4e-14
Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 20/246 (8%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
++ I SGKGG GK+T + NLS+AL + +KV +D D+ N+ ++G+ + DV +
Sbjct: 99 VVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQNADVIMDPSG 158
Query: 64 AGEAKLQD-AIYMTQFDNVYVLPGAVDWE--HVMKADPRKLPEVIKSLKGDYDFILIDCP 120
L+ + + +Y ++ W +M+A + L ++I GD D +++D P
Sbjct: 159 KKLIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDII---WGDLDVLVVDMP 215
Query: 121 AGLQLDAMSAMLSG---EEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN------ 171
G DA + + VT P+I L D + + +K + I G + N
Sbjct: 216 PGTG-DAQLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHIPIAGIVENMGSFVC 274
Query: 172 RYGRTENDI----PPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFV 227
+ + E++I + + +LA +P +P +R G +G P V P S AK F
Sbjct: 275 EHCKKESEIFGSNSMSGLLEAYNTQILAKLPLEPKVRLGGDKGEPIVISHPTSVSAKIFE 334
Query: 228 KLAQEV 233
K+A+++
Sbjct: 335 KMAKDL 340
>pir||E82123 MinD-related protein VC2067 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9656613|gb|AAF95213.1| (AE004280)
MinD-related protein [Vibrio cholerae]
Length = 313
Score = 79.2 bits (192), Expect = 4e-14
Identities = 67/244 (27%), Positives = 118/244 (47%), Gaps = 15/244 (6%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
+ ++IS+ GKGG GK+ VT +++ + + GKKV+ +D DL +AN+ ++LG+ L
Sbjct: 39 VTKVISVTGGKGGVGKSNVTLGMAICMAKQGKKVMVLDADLGLANVDVMLGIRP-KRNLG 97
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLP---GAVDWEHVMKADPRKLPEVIKSLKGDYDFILI 117
VLAGE +L+DAI + + ++P G + A L +L+ + D +LI
Sbjct: 98 HVLAGECELKDAI-VEGPHGIRIIPATSGTQSMTELSHAQHVGLIRAFGTLEDEMDILLI 156
Query: 118 DCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRK----AGLAILGFILNRY 173
D AG+ +S + ++ ++V E + +TD + +L K I+ ++ Y
Sbjct: 157 DTAAGISDMVVSFSRAAQDVVVVVCDEPTSITDAYALIKLLSKEHQVQRFKIVANMVRSY 216
Query: 174 --GR---TENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVK 228
GR + + + +V + L+A IP D +R+ V P S A A
Sbjct: 217 REGRELFAKLTLVTERFLNV-SLELVACIPLDDNVRQAVKRQKIVVDAYPRSPAALAISS 275
Query: 229 LAQE 232
LA +
Sbjct: 276 LANK 279
>pir||E70190 ATP-binding protein (ylxH-3) homolog - Lyme disease spirochete
>gi|2688658|gb|AAC67071.1| (AE001172) ATP-binding
protein (ylxH-3) [Borrelia burgdorferi]
Length = 323
Score = 78.8 bits (191), Expect = 5e-14
Identities = 47/147 (31%), Positives = 77/147 (51%), Gaps = 3/147 (2%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
M +II + SGKGG GKT+ AN+ L +GK V+ VD DL +NL LGV + V +
Sbjct: 1 MTKIIPVASGKGGVGKTSFVANVGYKLSSLGKTVILVDLDLGGSNLHTCLGVKNKGVGIG 60
Query: 61 DVLAGEAK-LQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDY--DFILI 117
+ ++K D + T +D +Y++PG + ++I+S++ D DFI +
Sbjct: 61 SFINKKSKSFSDLVCKTSYDKLYLIPGDALYTGTANLPFSIKKKIIESIQKDLIADFIFL 120
Query: 118 DCPAGLQLDAMSAMLSGEEALLVTNPE 144
D +G + + L+ ++VT PE
Sbjct: 121 DLGSGTSYNTIDFYLASYSGVIVTIPE 147
>pir||D75570 chromosome partitioning ATPase Soj - Deinococcus radiodurans
(strain R1) >gi|6457672|gb|AAF09606.1|AE001865_3
(AE001865) chromosome partitioning ATPase Soj
[Deinococcus radiodurans]
Length = 296
Score = 78.0 bits (189), Expect = 9e-14
Identities = 68/243 (27%), Positives = 108/243 (43%), Gaps = 14/243 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
+ I +V+ KGG GKTT NL L G++VL VD D N + LG + L++
Sbjct: 49 KTIGVVNQKGGVGKTTTAVNLGAYLAAGGRRVLVVDMD-PQGNATSGLGQRGAEQGLYEA 107
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHV---MKADPRKLPEVIKSLKGDYDFILIDC 119
L A+ D T + VLP D + DP L ++ S++G YD +L+D
Sbjct: 108 LGEPARSADFTLGTTQKGLDVLPATPDLAGAGVELADDPDALARLLASVQG-YDLVLVDA 166
Query: 120 PAGL------QLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRY 173
P L L A+ A+L +A ++ L +T++ L +LG +L
Sbjct: 167 PPSLGPLTVNVLAAVDALLIPVQAEYYALEGLAGLMETVERVQGGLNPRLKVLGIVLTML 226
Query: 174 GRTEN---DIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLA 230
N ++ Q ++ +V+P + + E G P + P S GA A+ +LA
Sbjct: 227 DSRTNLAQEVETMVRQHFGELVFWSVVPRNVRLSEAPSFGKPINAFAPLSSGAAAYKRLA 286
Query: 231 QEV 233
+EV
Sbjct: 287 EEV 289
>pir||E72233 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982164|gb|AAD36660.1|AE001804_4 (AE001804)
conserved hypothetical protein [Thermotoga maritima]
Length = 247
Score = 77.6 bits (188), Expect = 1e-13
Identities = 66/249 (26%), Positives = 118/249 (46%), Gaps = 25/249 (10%)
Query: 5 ISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLA 64
I+++SGKGG GKTTV NL+VAL G +V +D DL N+ +LGV ++
Sbjct: 7 IAVMSGKGGVGKTTVAVNLAVALAAEGYQVGLLDLDLHGPNVQRMLGVSLPPSEGEKIV- 65
Query: 65 GEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLK-GDYDFILIDCPAGL 123
AK D++ + + V W +K + + ++ + ++ GD D+++ D P G
Sbjct: 66 -PAKYGDSLKVFSLAMILQEGAPVIWRGPLK--HKAIEQLTRDVEWGDLDYLICDLPPGT 122
Query: 124 QLDAMSA--MLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNR--------- 172
+A+S ++ + ++V+ P+ D + +++ ILG + N
Sbjct: 123 GDEALSTFQIIKPDAVIVVSTPQKVAGDDVRRAINFVKRLSGKILGLVENMSYLVCPNCG 182
Query: 173 -----YGRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFV 227
+G+ E + + +PL+A IP DP + + EG PAV YK + + F
Sbjct: 183 EKIYVFGKGET----EKLAEEFGIPLIARIPMDPEVVSLSDEGRPAVVYKRGTVIEEEFK 238
Query: 228 KLAQEVEKL 236
K+ ++V L
Sbjct: 239 KIVEKVLSL 247
>gi|10957476 chromosome partitioning ATPase, putative, ParA family [Deinococcus
radiodurans] >gi|7473444|pir||A75618 probable chromosome
partitioning ATPase, ParA family - Deinococcus
radiodurans (strain R1)
>gi|6460905|gb|AAF12609.1|AE001826_78 (AE001826)
chromosome partitioning ATPase, putative, ParA family
[Deinococcus radiodurans]
Length = 258
Score = 77.6 bits (188), Expect = 1e-13
Identities = 70/264 (26%), Positives = 122/264 (45%), Gaps = 51/264 (19%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDV--T 58
M I+++ + GG GKT++ N++ + G+ VL +DGD +NL+ +GV D ++ T
Sbjct: 1 MTTILTVFTHAGGAGKTSIAGNIAHEFAQRGQHVLLIDGD-PQSNLTTNMGVQDAELHET 59
Query: 59 LHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRK------LPEVIKSLKGDY 112
L DVL+G+A L ++ FD ++P +D V + P + L + ++ G +
Sbjct: 60 LFDVLSGDAPLPAPRHVHGFD---LIPAVIDLAEVEPSIPGRVGGILALRDALQKESGRW 116
Query: 113 DFILIDCPAGL-QLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGL-AILGF-- 168
D ++ID P L QL A A+ + D + V I+ R GL A+ G
Sbjct: 117 DTVIIDSPPSLGQLAAACALAA----------------DALVVPIMTRSKGLNALRGLNR 160
Query: 169 ILNRYGRTENDIPPDAAQDVM-------DVPLLAVIPED------PAIREGTL------E 209
++ +Y R D+ A M D LL ++ ED P + G + +
Sbjct: 161 VMPQYHRLRPDLHVAAYVPTMCKSNRKEDSELLGIVREDLPHVTSPIVERGAVWNGAAEK 220
Query: 210 GIPAVKYKPESEGAKAFVKLAQEV 233
G+P + P S+ A+ K+ ++
Sbjct: 221 GLPVTVFAPRSKEAEEIRKITSDL 244
>pir||E82249 mrp protein VC1037 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9655501|gb|AAF94196.1| (AE004185) mrp
protein [Vibrio cholerae]
Length = 382
Score = 77.6 bits (188), Expect = 1e-13
Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 17/244 (6%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II++ SGKGG GK+T NL++A+ + G KV +D D+ ++ L+LG + D
Sbjct: 121 IIAVTSGKGGVGKSTTAVNLALAIAKSGGKVGLLDADIYGPSVPLMLGKTKAKPVVRDNK 180
Query: 64 AGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLK-GDYDFILIDCPAG 122
+ I + A W M + + L +++ + D D+++ID P G
Sbjct: 181 WMQPIEAHGIATHSIGYLVDEADAAIWRGPMAS--KALAQLLNETEWPDLDYLVIDMPPG 238
Query: 123 ---LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN-------R 172
+QL ++ + A++VT P+ L D K + K + ++G + N
Sbjct: 239 TGDIQL-TLAQQIPVTGAVIVTTPQDLALADARKGAAMFAKVDVPVIGLVENMSYHICSH 297
Query: 173 YGRTENDIPPDAAQDV---MDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKL 229
G E+ AQ + + LLA IP +RE G+P V +P SE + ++ L
Sbjct: 298 CGEKEHIFGVGGAQTLAAEFGLSLLAQIPLHIDMREDIDAGVPTVVARPNSEHTERYLAL 357
Query: 230 AQEV 233
AQ V
Sbjct: 358 AQRV 361
>pir||B81656 ParA family protein TC0871 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190898|gb|AAF39667.1| (AE002353) ParA
family protein [Chlamydia muridarum]
Length = 255
Score = 76.9 bits (186), Expect = 2e-13
Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 18/248 (7%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGK-KVLAVDGDLTMANLSLVLGVD-DVDVTLH 60
+ I++ S KGGT KT+ T +L AL + K +VL +D D ANL+ LG+D D +L
Sbjct: 2 KTIAVNSFKGGTAKTSTTLHLGAALAQYHKARVLLIDFD-AQANLTAGLGLDPDCYDSLA 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHV-----MKADP---RKLPEVIKSLKGDY 112
VL GE ++ + I + ++P E V + AD +L ++ +++ Y
Sbjct: 61 VVLQGEKQISEVIRSIDSSGLDLIPADTWLERVEVSGSLAADRYSHERLKTILSTIEHQY 120
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLR----KAGLAILGF 168
D+++ID P L SA+++ + AL+ PE + ++ ++ + L ILG
Sbjct: 121 DYVIIDTPPSLCWLTESALIAAQHALICATPEFYSVKGLERLATFIQGISSRHPLNILGV 180
Query: 169 ILN--RYGRTENDIPPDAAQDVMDVPLLAV-IPEDPAIREGTLEGIPAVKYKPESEGAKA 225
L+ Y N + Q LL I D I E + G P P + ++
Sbjct: 181 TLSFWNYRGKNNAAFTELIQKTFPGKLLNTRIRRDITISEAAIHGKPVFSTAPSARASED 240
Query: 226 FVKLAQEV 233
++KL +E+
Sbjct: 241 YLKLTEEL 248
>pir||G39999 hypothetical protein 7 - Chlamydophila psittaci
Length = 259
Score = 76.5 bits (185), Expect = 3e-13
Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 14/245 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMG-KKVLAVDGDLTMANLSLVLGVD-DVDVTLH 60
+ ++ S KGGTGKTT++ N+ L ++ KKVL VD D ANL+ LGV D +L+
Sbjct: 2 KTLAFCSFKGGTGKTTLSLNIGSNLAQVSRKKVLLVDLD-PQANLTTGLGVQIQDDHSLN 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADP------RKLPEVIKSLKGDYDF 114
++L +++ AI+ T+ +N+ ++P +V E D L ++ ++ YD
Sbjct: 61 EILRHSNEIRRAIHKTKIENLDIIPSSVLVEDFRGLDKDISLSVNHLHLALQKVQDQYDV 120
Query: 115 ILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAG--LAILGFILNR 172
++D P L + + A L+ + ++ PE + K+ G L ILG + +
Sbjct: 121 CILDTPPSLGILSQEAFLASDYLVVCLTPEPFSILGLQKIKEFCSTIGNNLDILGIVFSF 180
Query: 173 YG--RTENDIPPDAAQDVMDVPLL-AVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKL 229
+ + N D + + + +L + I D + L+ + P S AK + L
Sbjct: 181 WDERNSTNSTYMDIIETIYEGKILSSKIRRDVTVSRSLLKESSVINAYPNSRAAKDILNL 240
Query: 230 AQEVE 234
+E+E
Sbjct: 241 TKEIE 245
>gi|10957096 hypothetical protein [Chlamydophila psittaci] >gi|97235|pir||S18148
hypothetical protein 7 - Chlamydophila psittaci
>gi|580999|emb|CAA44339.1| (X62475) hypothetical protein
[Chlamydophila psittaci]
Length = 259
Score = 76.5 bits (185), Expect = 3e-13
Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 14/245 (5%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMG-KKVLAVDGDLTMANLSLVLGVD-DVDVTLH 60
+ ++ S KGGTGKTT++ N+ L ++ KKVL VD D ANL+ LGV D +L+
Sbjct: 2 KTLAFCSFKGGTGKTTLSLNIGSNLAQVSRKKVLLVDLD-PQANLTTGLGVQIQDDHSLN 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADP------RKLPEVIKSLKGDYDF 114
++L +++ AI+ T+ +N+ ++P +V E D L ++ ++ YD
Sbjct: 61 EILRHSNEIRRAIHKTKIENLDIIPSSVLVEDFRGLDKDISLSVNHLHLALQKVQDQYDV 120
Query: 115 ILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAG--LAILGFILNR 172
++D P L + + A L+ + ++ PE + K+ G L ILG + +
Sbjct: 121 CILDTPPSLGILSQEAFLASDYLVVCLTPEPFSILGLQKIKEFCSTIGNNLDILGIVFSF 180
Query: 173 YG--RTENDIPPDAAQDVMDVPLL-AVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKL 229
+ + N D + + + +L + I D + L+ + P S AK + L
Sbjct: 181 WDERNSTNSTYMDIIETIYEGKILSSKIRRDVTVSRSLLKESSVINAYPNSRAAKDILNL 240
Query: 230 AQEVE 234
+E+E
Sbjct: 241 TKEIE 245
>emb|CAB08277.1| (Z95117) hypothetical protein MLC1351.06c [Mycobacterium leprae]
Length = 250
Score = 76.5 bits (185), Expect = 3e-13
Identities = 69/240 (28%), Positives = 109/240 (44%), Gaps = 19/240 (7%)
Query: 11 KGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD--DVDVTLHDVLAGE-A 67
KGG GKTT T NL AL E G++VL VD D LS LGV ++D T+H+++
Sbjct: 5 KGGVGKTTSTINLGAALTEFGRRVLLVDID-PQGALSAGLGVPHYELDRTIHNLMVEPLV 63
Query: 68 KLQDAIYMTQFDNVYVLPGAVDWEHV------MKADPRKLPEVIKSLKGDYDFILIDCPA 121
+ D + T+ + ++P +D + L + + YD++LIDC
Sbjct: 64 SIDDVLIHTRVRYLDLVPSNIDLSAAEIQLVNEVGREQTLARALHPVLDRYDYVLIDCQP 123
Query: 122 GLQLDAMSAMLSGEEALLVTNPE------ISCLTDTMKVGIVLRKAGLAILGFILNRYG- 174
L L ++ + E ++ T E ++ LTDT+ L I G ++ RY
Sbjct: 124 SLGLLTVNGLACAEGVVIPTECEFFSLRGLALLTDTVDKVRDRLNPKLEISGILITRYDP 183
Query: 175 RTEN--DIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQE 232
RT N ++ + D+ VI E ++ G P + P+S GA+A+ LA E
Sbjct: 184 RTVNAREVMARVVERFGDLVFDTVITRTVRFPETSVAGEPITTWAPKSGGARAYRALACE 243
>gb|AAG10431.1| (AF251019) minD [Tagetes erecta]
Length = 295
Score = 76.1 bits (184), Expect = 4e-13
Identities = 68/227 (29%), Positives = 116/227 (50%), Gaps = 27/227 (11%)
Query: 33 KVLAVDGDLTMANLSLVLGVDD-VDVTLHDVLAGEAKLQDAIYMTQFDNVYVLPGAVDWE 91
+V+A+D D+ + NL L+LG+++ V+ T+ +VL G+ +L A+ + + ++E
Sbjct: 60 RVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS--------NFE 111
Query: 92 HVMKADPR-KLP-----------EVIKSLK-GDYDFILIDCPAGLQLDAMSAMLSGEEAL 138
+ + PR KLP + +K + G DFILIDCPAG+ ++A+ EA+
Sbjct: 112 LLCISKPRSKLPLGFGGKALVWLDALKDRQEGCPDFILIDCPAGIDAGFITAITPANEAV 171
Query: 139 LVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG----RTENDIPPDAAQDVMDVPLL 194
LVT P+I+ L D +V +L G+ + I+NR R E+ + Q+++ + LL
Sbjct: 172 LVTTPDITALRDADRVTGLLECDGIRDIKMIVNRVRTDLIRGEDMMSVLDVQEMLGLSLL 231
Query: 195 AVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKLAQEVEKLAGIKA 241
+ IR T G P V KP + AF + A + + +KA
Sbjct: 232 SDTRGFEVIR-STNRGFPLVLNKPPTLAGLAFEQAAWRLVEQDSMKA 277
>pir||B64649 ATP-binding protein - Helicobacter pylori (strain 26695)
>gi|2314178|gb|AAD08077.1| (AE000611) ATP-binding
protein (ylxH) [Helicobacter pylori 26695]
Length = 294
Score = 75.7 bits (183), Expect = 5e-13
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
+ I+I SGKGG GK+ ++ANL+ +L + G KV D D+ +ANL ++ GV LH
Sbjct: 28 KFIAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTHKNILH-A 86
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMK--ADPRKLPEVI--KSLKGDYDFILID 118
L GEAKLQ+ I + + ++PG E ++K + L + + + + D+I++D
Sbjct: 87 LKGEAKLQEIICEIE-PGLCLIPGD-SGEEILKYISGAEALDQFVDEEGVLSSLDYIVVD 144
Query: 119 CPAGLQLDAMSAMLSGEEALLVTNPEISCLTD 150
AG+ + + + + ++VT P+ S +TD
Sbjct: 145 TGAGIGATTQAFLNASDCVVIVTTPDPSAITD 176
>pir||D81256 probable ATP/GTP-binding protein (mrp protein homolog) Cj1606c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6969023|emb|CAB73594.1| (AL139079) putative
ATP/GTP-binding protein (mrp protein homolog)
[Campylobacter jejuni]
Length = 368
Score = 75.7 bits (183), Expect = 5e-13
Identities = 71/245 (28%), Positives = 115/245 (45%), Gaps = 22/245 (8%)
Query: 5 ISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLA 64
I + SGKGG GK+T T NL++++ +MGK+V +D D+ N+ +LG T +V+
Sbjct: 100 IMVSSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETK---TQPEVVG 156
Query: 65 GEAK--LQDAIYMTQFDNVYVLPGAVDWE--HVMKADPRKLPEVIKSLKGDYDFILIDCP 120
K L +YM + + W +MKA + L +VI + D + +D P
Sbjct: 157 QRLKPILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWP---ELDVLFLDMP 213
Query: 121 AGLQLDAMSAMLSGEEA--LLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG---- 174
G +++ S A + V+ P+ L D+ + + K + I G I N G
Sbjct: 214 PGTGDAQITSAQSIPIAAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCP 273
Query: 175 --RTENDI-PPDAAQDVMDV---PLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVK 228
E DI A+D+ +LA IP + +REG EG P Y PES +K ++
Sbjct: 274 DNGKEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSKRYLM 333
Query: 229 LAQEV 233
A+++
Sbjct: 334 AAEKI 338
>pir||G82122 ParA family protein VC2061 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9656607|gb|AAF95207.1| (AE004280)
ParA family protein [Vibrio cholerae]
Length = 258
Score = 75.7 bits (183), Expect = 5e-13
Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 21/252 (8%)
Query: 6 SIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD--VDVTLHDVL 63
S+ + KGG GKTT T L+ L + GK+VL VD D A+L+ LG D V +L D+
Sbjct: 5 SVANQKGGVGKTTTTITLAGLLSQQGKRVLLVDTD-PHASLTTYLGYDSDGVPASLFDLF 63
Query: 64 A----GEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRK------LPEVIKSLKGDYD 113
EA ++ I T + ++P + + + + L + +L+ YD
Sbjct: 64 QLREYNEASVKPLILNTDIQGIDLIPAHMSLATLDRVMGNRSGMGLILKRALLALRHVYD 123
Query: 114 FILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVL--------RKAGLAI 165
++LIDCP L + ++A+ + + L+ E + ++ L R+ + I
Sbjct: 124 YVLIDCPPILGVMMVNALAASDRILIPVQTEFLAMKGLERMVRTLAIMQKSRSREFKVTI 183
Query: 166 LGFILNRYGRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKA 225
+ + ++ R +D D + +P D R+ +L+ +PA + S G A
Sbjct: 184 VPTMYDKRTRASLQTLNQLKKDYPDKVWTSAVPIDTKFRDASLQRLPASHFAEGSRGVFA 243
Query: 226 FVKLAQEVEKLA 237
+ +L +E+LA
Sbjct: 244 YKQLLLFLERLA 255
>pir||D71938 hypothetical protein jhp0390 - Helicobacter pylori (strain J99)
>gi|4154927|gb|AAD05975.1| (AE001473) putative
[Helicobacter pylori J99]
Length = 294
Score = 75.3 bits (182), Expect = 6e-13
Identities = 50/152 (32%), Positives = 84/152 (54%), Gaps = 7/152 (4%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
+ I+I SGKGG GK+ ++ANL+ +L + G KV D D+ +ANL ++ GV LH
Sbjct: 28 KFIAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTHKNILH-A 86
Query: 63 LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMK--ADPRKLPEVI--KSLKGDYDFILID 118
L GEAKLQ+ I + + ++PG E ++K + L + + + D+I+ID
Sbjct: 87 LKGEAKLQEIICEIE-PGLCLIPGD-SGEEILKYISGAEALDRFVDEEGVLSSLDYIVID 144
Query: 119 CPAGLQLDAMSAMLSGEEALLVTNPEISCLTD 150
AG+ + + + + ++VT P+ S +TD
Sbjct: 145 TGAGIGATTQAFLNASDCVVIVTTPDPSAITD 176
>pir||D75131 mrp-family probable nucleotide-binding protein PAB1795 - Pyrococcus
abyssi (strain Orsay) >gi|5458276|emb|CAB49765.1|
(AJ248285) MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING
PROTEIN [Pyrococcus abyssi]
Length = 295
Score = 75.3 bits (182), Expect = 6e-13
Identities = 72/258 (27%), Positives = 129/258 (49%), Gaps = 23/258 (8%)
Query: 5 ISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLA 64
++++SGKGG GK+TV NL+ AL +MG V +D D+ N++ +LGV+ ++
Sbjct: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
Query: 65 GEAKL--QDAIYMTQFDNVYVLPGA--VDWEHVMKADPRKLPEVIKSLKGD-----YDFI 115
G ++ A +M Q + V+ V + + + + IK L GD DF+
Sbjct: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
Query: 116 LIDCPAGLQLDAMSAM--LSGEEALLVTNPEISCLTDTMKVGIVLRK------AGLAILG 167
+ID P G + ++ + + + A++VT P+ L DT K +++K A + +
Sbjct: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
Query: 168 FILNRYGRTENDIPPDAAQDVM----DVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
+++ + + DI + + + V L IP D RE + GIP V Y ++ A
Sbjct: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLY-GDTPAA 271
Query: 224 KAFVKLAQE-VEKLAGIK 240
KAF+++A++ V KL +K
Sbjct: 272 KAFMEIAEKLVNKLKEMK 289
>pir||G71495 probable chromosome partitioning ATPase-chltr plasmid protein
homolog gp5d - Chlamydia trachomatis (serotype D, strain
UW3/Cx) >gi|3329025|gb|AAC68184.1| (AE001329) chromosome
partitioning ATPase-CHLTR plasmid protein homolog GP5D
[Chlamydia trachomatis]
Length = 255
Score = 74.9 bits (181), Expect = 8e-13
Identities = 68/248 (27%), Positives = 115/248 (45%), Gaps = 18/248 (7%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGK-KVLAVDGDLTMANLSLVLGVD-DVDVTLH 60
+ I++ S KGGT KT+ T +L AL + K +VL +D D ANL+ LG+D D +L
Sbjct: 2 KTIAVNSFKGGTAKTSTTLHLGAALAQYHKARVLLIDFD-AQANLTAGLGLDPDCYDSLA 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHV-----MKAD---PRKLPEVIKSLKGDY 112
VL GE +++ I + ++P E V + AD +L ++ ++ Y
Sbjct: 61 VVLQGEKNIEEVIRPIDSSGLDLIPADTWLERVEVSGSLAADRYSHERLKIILSKIEHRY 120
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLR----KAGLAILGF 168
D+++ID P L SA+++ + AL+ PE + ++ ++ + L ILG
Sbjct: 121 DYVIIDTPPSLCWLTESALIAAQHALICATPEFYSVKGLERLATFIQGISSRHPLNILGV 180
Query: 169 ILN--RYGRTENDIPPDAAQDVMDVPLLAV-IPEDPAIREGTLEGIPAVKYKPESEGAKA 225
L+ Y N + Q LL I D I E + G P P + ++
Sbjct: 181 TLSFWNYRGKNNAAFTELIQKTFPGKLLNTRIRRDITISEAAIHGKPVFSTAPSARASED 240
Query: 226 FVKLAQEV 233
++KL +E+
Sbjct: 241 YLKLTEEL 248
>sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|11279019|pir||T45199 probable mrp protein
[imported] - Mycobacterium leprae
>gi|699143|gb|AAA62909.1| (U15180) MRP protein
[Mycobacterium leprae]
Length = 435
Score = 74.5 bits (180), Expect = 1e-12
Identities = 68/264 (25%), Positives = 117/264 (43%), Gaps = 32/264 (12%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
+ R+ ++ SGKGG GK+TVT NL+ A+ G V +D D+ ++ ++G + + L
Sbjct: 170 LTRVYTVASGKGGVGKSTVTVNLATAIAARGLAVGVLDADIHGHSIPRMMGSNQRPIQLE 229
Query: 61 DV----LAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFIL 116
+ + E K+ T+ + + G + + +A + L +V GD D ++
Sbjct: 230 SMILPPIVHEVKVISIGQFTEGNTPVIWRGPM----LHRALQQFLSDV---YWGDLDVLM 282
Query: 117 IDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG 174
+D P G A+S ++ E L+VT P+++ + G + + I+G + N G
Sbjct: 283 LDLPPGTGDIAISVAQLIPNAEILVVTTPQLAAAEVAERAGSIALQTRQRIVGVVENMSG 342
Query: 175 RTEND------IPPDAAQDV---------MDVPLLAVIPEDPAIREGTLEGIPAVKYKPE 219
D Q V DVPLL IP DPA+ GIP V +
Sbjct: 343 LMMPDGSRLQVFGEGGGQQVAERLSRAVGTDVPLLGQIPLDPALVAAGDSGIPIVLNASD 402
Query: 220 SEGAKAFVKLAQEV----EKLAGI 239
S K +++A + +LAG+
Sbjct: 403 SPVGKELLRIADGLSSRQRRLAGV 426
>gb|AAF00142.1|AF149810_1 (AF149810) cell division inhibitor MinD homolog [Oryza sativa]
Length = 179
Score = 74.5 bits (180), Expect = 1e-12
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 22/134 (16%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTLHD 61
R++ + SGKGG GKTT TANL+ +L + +AVD D + NL L+LG+++ V +T D
Sbjct: 37 RVVVVTSGKGGVGKTTTTANLAASLARLSLSAVAVDADAGLRNLDLLLGLENRVHLTAAD 96
Query: 62 VLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPR-KLP------------EVIKSL 108
VLAG+ +L A+ + D + + + PR KLP + ++
Sbjct: 97 VLAGDCRLDQALVRHR--------ALHDLQLLCLSKPRSKLPLAFGSKTLTWVADALRRA 148
Query: 109 KGDYDFILIDCPAG 122
FILIDCPAG
Sbjct: 149 ANPPAFILIDCPAG 162
>emb|CAA57590.1| (X82078) ORF7 [Chlamydophila pneumoniae]
Length = 261
Score = 74.1 bits (179), Expect = 1e-12
Identities = 58/247 (23%), Positives = 117/247 (46%), Gaps = 16/247 (6%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGE-MGKKVLAVDGDLTMANLSLVLGVDD-VDVTLH 60
+ I+ S KGGTGKTT++ N+ L + KKVL VD D ANL+ LGV + L+
Sbjct: 2 KTIAFCSFKGGTGKTTLSLNVGCNLAQYSNKKVLLVDLD-PQANLTTGLGVQSCYESNLN 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAV------DWEHVMKADPRKLPEVIKSLKGDYDF 114
D+ ++D I T+ +N++++P ++ ++ D L ++ ++ +YD
Sbjct: 61 DIFRSSGNVRDIIQDTKIENLHIVPSSILIEEFREFNRNSVLDTSHLRSSLQLIESNYDL 120
Query: 115 ILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV----GIVLRKAGLAILGFIL 170
++D P L A ++ + ++ PE + K+ ++ +K L++LG +
Sbjct: 121 CILDTPPSLGTLTEEAFIASDHLIVCLTPEPFSILGLQKIKEFCSVLPKKKDLSVLGIVF 180
Query: 171 NRY-GR-TENDIPPDAAQDVMDVPLL-AVIPEDPAIREGTLEGIPAVKYKPESEGAKAFV 227
+ + GR + N + + + + +L + + D + L+ P S + +
Sbjct: 181 SFWDGRNSTNSTYLNIIESIYEGKVLSSKVRRDITLSRSLLKETSIANAYPNSRASHDIL 240
Query: 228 KLAQEVE 234
+L +E+E
Sbjct: 241 RLTKEIE 247
>pir||H70144 ATP-binding protein (ylxH-2) homolog - Lyme disease spirochete
>gi|2688275|gb|AAC66752.1| (AE001142) ATP-binding
protein (ylxH-2) [Borrelia burgdorferi]
Length = 380
Score = 74.1 bits (179), Expect = 1e-12
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 13/206 (6%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II + SGKGG GK+ + N+++ L GK VL VD DL +NL +L + ++ L
Sbjct: 3 IIPVASGKGGVGKSLFSTNIAICLANEGKSVLLVDLDLGASNLHSMLNIIP-KKSIGTFL 61
Query: 64 AGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKG-DYDFILIDCPAG 122
D I + N+ + G D + + +IK+LK YD+++ID AG
Sbjct: 62 KTRINFSDIIIQSGIKNLNFIAGDSDIPELANIAASQKKIIIKNLKSLKYDYLVIDLGAG 121
Query: 123 LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTENDIPP 182
+ + L + ++VT P + T TM + L+ +L + R G N+I
Sbjct: 122 TAFNIIDFFLMSKRGVIVTTPTV---TATMNAYLFLKNIIFRLLSSVFKR-GTKGNEILR 177
Query: 183 DAAQDVMDVP-------LLAVIPEDP 201
Q+ +D+ LL + EDP
Sbjct: 178 TIKQNSIDLQRVYIPNLLLKLESEDP 203
>pir||S11948 mrp protein - Escherichia coli >gi|42017|emb|CAA39316.1| (X55791)
put. ATPase [Escherichia coli]
Length = 369
Score = 73.7 bits (178), Expect = 2e-12
Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 29/250 (11%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHD-- 61
II++ SGKGG GK++ NL++AL G KV +D D+ ++ +LG ++ T D
Sbjct: 109 IIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGT 168
Query: 62 ----VLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILI 117
+++ Y+ DN V G + + +M+ + ++L D D++++
Sbjct: 169 HMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQM-------LQETLWPDLDYLVL 221
Query: 118 DCPAG---LQLD-AMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN-- 171
D P G +QL A + ++G A++VT P+ L D K ++ K + +LG + N
Sbjct: 222 DMPPGTGDIQLTLAQNIPVTG--AVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMS 279
Query: 172 -----RYGRTENDIPPDAAQDVMD---VPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G E A+ + + LL +P ++RE +G P V +PESE
Sbjct: 280 VHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRPESEFT 339
Query: 224 KAFVKLAQEV 233
+ +LA V
Sbjct: 340 AIYRQLADRV 349
>sp|P21590|MRP_ECOLI MRP PROTEIN >gi|7446818|pir||H64978 probable ATPase mrp -
Escherichia coli >gi|405896|gb|AAA60527.1| (U00007) mrp
[Escherichia coli] >gi|1788431|gb|AAC75174.1| (AE000300)
putative ATPase [Escherichia coli K12]
>gi|744212|prf||2014253F ATPase [Escherichia coli]
Length = 379
Score = 73.7 bits (178), Expect = 2e-12
Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 29/250 (11%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHD-- 61
II++ SGKGG GK++ NL++AL G KV +D D+ ++ +LG ++ T D
Sbjct: 119 IIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGT 178
Query: 62 ----VLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDYDFILI 117
+++ Y+ DN V G + + +M+ + ++L D D++++
Sbjct: 179 HMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQM-------LQETLWPDLDYLVL 231
Query: 118 DCPAG---LQLD-AMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN-- 171
D P G +QL A + ++G A++VT P+ L D K ++ K + +LG + N
Sbjct: 232 DMPPGTGDIQLTLAQNIPVTG--AVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMS 289
Query: 172 -----RYGRTENDIPPDAAQDVMD---VPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G E A+ + + LL +P ++RE +G P V +PESE
Sbjct: 290 VHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRPESEFT 349
Query: 224 KAFVKLAQEV 233
+ +LA V
Sbjct: 350 AIYRQLADRV 359
>gb|AAC78666.1| (AF094575) Cps19aD [Streptococcus pneumoniae]
Length = 229
Score = 73.7 bits (178), Expect = 2e-12
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 2/172 (1%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++ SI S K G GKTT + N++ A G K L +D D+ + +S V + L +
Sbjct: 36 KVFSITSVKAGEGKTTTSTNIAWAFARAGYKTLLIDADMRNSVMSGVFKSRERITGLTEF 95
Query: 63 LAGEAKLQDAIYMTQFDNVYVL-PGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID-CP 120
L+G L + T +N++V+ G+V + ++++L+ +D+I++D P
Sbjct: 96 LSGTTDLSQGLCDTNIENLFVIQAGSVSPNPTALLQSKNFTTMLETLRKYFDYIVVDTAP 155
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNR 172
G+ +DA M + ++LVT + D K L + G + LG +LN+
Sbjct: 156 VGVVIDAAIIMQKCDASILVTKAGETKRRDLQKAKEQLEQTGKSCLGVVLNK 207
>pir||A69096 nitrogenase reductase related protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622843|gb|AAB86183.1| (AE000928) nitrogenase
reductase related protein [Methanobacterium
thermoautotrophicum]
Length = 252
Score = 73.0 bits (176), Expect = 3e-12
Identities = 71/254 (27%), Positives = 121/254 (46%), Gaps = 27/254 (10%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD------DVDV 57
+I VSGKGGTGKT +A+L L G VLA+D D +NL LGV DV
Sbjct: 5 VIIAVSGKGGTGKTMFSASLIRVLASTGADVLAIDADPD-SNLPEALGVPVSGTVGDVRE 63
Query: 58 TL-HDVLAG------------EAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEV 104
L D AG + ++ +I T+ ++ V+ G + A L +
Sbjct: 64 QLKRDTAAGRIPPSANKWDMLDYRIMASITETRDFDLLVM-GRPEGSGCYCAVNTMLRRI 122
Query: 105 IKSLKGDYDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLA 164
I+++ +YD+I+ID AGL+ + + + ++VT+P + ++ + ++ +
Sbjct: 123 IENIAENYDYIVIDTEAGLEHLSRRTTQNVDIMIVVTDPSKRGILTARRIVELSQELEIK 182
Query: 165 I--LGFILNRYGRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEG 222
+ +LNR E D+ D ++V + VIPEDP + +EG P + +SE
Sbjct: 183 FKKVFLVLNRV--REGDLDRLELDDGLEV--IGVIPEDPLVSSYDMEGRPLYELPEDSES 238
Query: 223 AKAFVKLAQEVEKL 236
+A K+A+++ L
Sbjct: 239 FRAIKKVAEKILSL 252
>dbj|BAA91471.1| (AK001023) unnamed protein product [Homo sapiens]
Length = 271
Score = 73.0 bits (176), Expect = 3e-12
Identities = 66/253 (26%), Positives = 114/253 (44%), Gaps = 29/253 (11%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II ++SGKGG GK+T++ L++AL GKKV +D DL ++ +LG V H
Sbjct: 16 IILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAV--HQCD 73
Query: 64 AGEAKL----QDAIYMTQFDNVYVLPGAVDWEHVMKADPRK---LPEVIKSLK-GDYDFI 115
G A + + +I + + P E V+ P+K + + + + G+ D++
Sbjct: 74 RGWAPVFLDREQSISLMSVGFLLEKPD----EAVVWRGPKKNALIKQFVSDVAWGELDYL 129
Query: 116 LIDCPAGLQLDAMSAMLSGEE-----ALLVTNPEISCLTDTMKVGIVLRKAGLAILGFIL 170
++D P G + M+ + + AL+VT P+ + D + RK GL ++G +
Sbjct: 130 VVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVE 189
Query: 171 NRYGRTENDIPP----------DAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPES 220
N G T + + VP L +P DPA+ EG +++ P S
Sbjct: 190 NMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGHDSIQEFPGS 249
Query: 221 EGAKAFVKLAQEV 233
A +AQ++
Sbjct: 250 PAFAALTSIAQKI 262
>emb|CAC01353.1| (AL390975) putative ATP-binding protein [Streptomyces coelicolor
A3(2)]
Length = 377
Score = 73.0 bits (176), Expect = 3e-12
Identities = 70/252 (27%), Positives = 109/252 (42%), Gaps = 29/252 (11%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLH 60
+ R+ ++ SGKGG GK++VT NL+ ++ G KV VD D+ ++ +LG D +
Sbjct: 110 LTRVYAVASGKGGVGKSSVTVNLAASMAADGLKVGVVDADIYGHSVPRMLGADGRPTQVE 169
Query: 61 D-VLAGEAKLQDAIYMTQFDNVYVLPG--AVDWEHVMKADPRKLPEVIKSLK-GDYDFIL 116
+ ++ A I + F PG V W M R L + + + GD D +L
Sbjct: 170 NMIMPPSAHGVKVISIGMF-----TPGNAPVVWRGPML--HRALQQFLADVYWGDLDVLL 222
Query: 117 IDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN--- 171
+D P G A+S ++ E L+VT P+ + + G + + I+G + N
Sbjct: 223 LDLPPGTGDIAISVAQLVPNAEILVVTTPQQAAAEVAERAGAIAVQTHQKIVGVVENMSG 282
Query: 172 ----RYGRTENDIPPDAAQDVMD---------VPLLAVIPEDPAIREGTLEGIPAVKYKP 218
G + Q V D VP+L IP D +REG EG P V P
Sbjct: 283 LPCPHCGEMVDVFGTGGGQTVADGLTRTTGASVPVLGAIPIDVRLREGGDEGKPVVLSDP 342
Query: 219 ESEGAKAFVKLA 230
+S A +A
Sbjct: 343 DSPAGAALRSIA 354
>sp|P45135|MRP_HAEIN MRP PROTEIN HOMOLOG >gi|1075171|pir||A64114 probable ATPase mrp -
Haemophilus influenzae (strain Rd KW20)
>gi|1574732|gb|AAC22925.1| (U32807) ATP-binding protein
(mrp) [Haemophilus influenzae Rd]
Length = 386
Score = 71.8 bits (173), Expect = 7e-12
Identities = 67/244 (27%), Positives = 115/244 (46%), Gaps = 17/244 (6%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II++ SGKGG GK++V+ NL++AL G +V +D D+ ++ +LG D T D
Sbjct: 125 IIAVSSGKGGVGKSSVSVNLALALQAQGARVGILDADIYGPSIPHMLGAADQRPTSPDNQ 184
Query: 64 AGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVI-KSLKGDYDFILIDCPAG 122
+ + A W M + L +++ ++L D+++ID P G
Sbjct: 185 HITPIKAHGLSANSIGFLMNEDSATIWRGPMASS--ALSQLLNETLWDSLDYLVIDMPPG 242
Query: 123 ---LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILN-------R 172
+QL +S + A++VT P+ L D +K + + + +LG + N
Sbjct: 243 TGDIQL-TLSQQIPVTGAVVVTTPQDIALLDAVKGISMFERVSVPVLGIVENMSMHICSE 301
Query: 173 YGRTENDIPPDAAQDVMD---VPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFVKL 229
G E A+ + + V +LA +P IRE G P V PE+E ++AF++L
Sbjct: 302 CGHHEAIFGTGGAEKMAEKYNVKVLAQLPLHIRIREDLDAGNPTVVRVPENEISQAFLQL 361
Query: 230 AQEV 233
A++V
Sbjct: 362 AEKV 365
>gi|6912540 nucleotide binding protein 2 (E.coli MinD like) [Homo sapiens]
>gi|11432473|ref|XP_008093.1| nucleotide binding protein
2 (E.coli MinD like) [Homo sapiens]
>gi|5565870|gb|AAD45242.1|AF118394_1 (AF118394) putative
nucleotide binding protein [Homo sapiens]
Length = 271
Score = 71.8 bits (173), Expect = 7e-12
Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
II ++SGKGG GK+T++ L++AL GKKV +D DL ++ +LG V H
Sbjct: 16 IILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAV--HQCD 73
Query: 64 AGEAKL----QDAIYMTQFDNVYVLPGAVDWEHVMKADPRK---LPEVIKSLK-GDYDFI 115
G A + + +I + + P E V+ P+K + + + + G+ D++
Sbjct: 74 RGWAPVFLDREQSISLMSVGFLLEKPD----EAVVWRGPKKNALIKQFVSDVAWGELDYL 129
Query: 116 LIDCPAGLQLDAMSAMLSGEE-----ALLVTNPEISCLTDTMKVGIVLRKAGLAILGFIL 170
++D P G + M+ + + AL+VT P+ + D + RK GL ++G +
Sbjct: 130 VVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVE 189
Query: 171 NRYGRTENDIPP----------DAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPES 220
N G T + + VP L +P DPA+ EG ++ P S
Sbjct: 190 NMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGHDFIQEFPGS 249
Query: 221 EGAKAFVKLAQEV 233
A +AQ++
Sbjct: 250 PAFAALTSIAQKI 262
>pir||F75448 mrp protein - Deinococcus radiodurans (strain R1)
>gi|6458727|gb|AAF10574.1|AE001952_2 (AE001952) mrp
protein [Deinococcus radiodurans]
Length = 350
Score = 71.8 bits (173), Expect = 7e-12
Identities = 63/244 (25%), Positives = 111/244 (44%), Gaps = 23/244 (9%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVL 63
++ + SGKGG GK++V NL+ +L G +V +D D+ +++ +LG VT ++
Sbjct: 93 VVLVGSGKGGVGKSSVAVNLAASLARDGARVGLLDADVYGPSVAHMLGQGQARVTANEDR 152
Query: 64 AGEAKLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIK-SLKGDYDFILIDCPAG 122
+ N+ A+ W M + + +K S G+ D++++D P G
Sbjct: 153 KMRPIEAHGVRFISMANLSPAGQALVWRGPMLHS--AIQQFLKDSAWGELDYLIVDLPPG 210
Query: 123 ---LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTEND 179
+QL +++ + A++VT P+ L D + + RKA + +LG + N
Sbjct: 211 TGDVQL-SLTQTVQVTGAVIVTTPQDVALIDAARAIDMFRKASVPVLGVVEN----MSYF 265
Query: 180 IPPDA--AQDVM----------DVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKAFV 227
+ PD D+ PLL IP D +R+ G PA+ PES A+A
Sbjct: 266 VAPDTGLTYDIFGRGGSRKLGEQYPLLGEIPLDVEVRKDADAGAPAILAHPESVAAQALR 325
Query: 228 KLAQ 231
+A+
Sbjct: 326 AVAR 329
>pir||T50033 capsular polysaccharide synthesis protein 14D [validated] -
Streptococcus pneumoniae >gi|1279735|emb|CAA59776.1|
(X85787) capsular polysaccharide synthesis protien
[Streptococcus pneumoniae]
Length = 227
Score = 71.4 bits (172), Expect = 9e-12
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 2/172 (1%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++IS+ S G GKTT + N++ + G K L +DGD + +S V + L +
Sbjct: 36 KVISVTSVNPGEGKTTTSVNIARSFARAGYKTLLIDGDTRNSVISGVFKSREKITGLTEF 95
Query: 63 LAGEAKLQDAIYMTQFDNVYVL-PGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDC-P 120
L+G A L + T +N++V+ G V + ++I++L+ +D+I++D P
Sbjct: 96 LSGTADLSYGLCDTNIENLFVVQSGPVSPNPTALLQSKNFNDMIETLRKYFDYIIVDTPP 155
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNR 172
G+ +DA+ + ++LVT + D K L + G LG +LN+
Sbjct: 156 VGIVIDAVIITQKCDASILVTATGEANKRDVQKAKQQLEQTGKLFLGVVLNK 207
>emb|CAB43607.1| (AJ239004) cap8D [Streptococcus pneumoniae]
Length = 229
Score = 71.4 bits (172), Expect = 9e-12
Identities = 47/178 (26%), Positives = 84/178 (46%), Gaps = 2/178 (1%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++ SI S K G GK+T + N++ A G K L +DGD+ + + V D L +
Sbjct: 36 KVFSITSVKLGEGKSTTSTNIAWAFARAGYKTLLIDGDIRNSVMLGVFKARDKITGLTEF 95
Query: 63 LAGEAKLQDAIYMTQFDNVYVL-PGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID-CP 120
L+G L + T +N++V+ G+V + ++++L+ +D+I++D P
Sbjct: 96 LSGTTDLSQGLCDTNIENLFVIQAGSVSPNPTALLQSKNFTTMLETLRKYFDYIIVDTAP 155
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYGRTEN 178
G+ +DA + ++LVT D K L G LG +LN++ + N
Sbjct: 156 VGVVIDAAIITRKCDASILVTEAGEINRRDIQKAKEQLEHTGKPFLGVVLNKFDTSVN 213
>pir||F70595 hypothetical protein Rv3213c - Mycobacterium tuberculosis (strain
H37RV) >gi|2072672|emb|CAB08303.1| (Z95120) hypothetical
protein Rv3213c [Mycobacterium tuberculosis]
Length = 266
Score = 71.0 bits (171), Expect = 1e-11
Identities = 67/250 (26%), Positives = 122/250 (48%), Gaps = 20/250 (8%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGD-LTMANLSLVLGVDDVDVTLHD 61
R++++ + KGG KTT A+L A+ E G++VL VD D SL D + V++H+
Sbjct: 5 RVLAVANQKGGVAKTTTVASLGAAMVEKGRRVLLVDLDPQGCLTFSLGQDPDKLPVSVHE 64
Query: 62 VLAGEAKLQDAIYMTQFDNVYVLPGAVDWEH-----VMKADPR-KLPEVIKSLKGDYDFI 115
VL GE + +A+ +T + + +LP +D +M+A L + +D +
Sbjct: 65 VLLGEVE-PNAVLVTTMEGMTLLPANIDLAGAEAMLLMRAGREYALKRALAKFSDRFDVV 123
Query: 116 LIDCPAGLQLDAMSAMLSGEEAL------LVTNPEISCLTDTMKVGIVLRKAGLAILGFI 169
+IDCP L + ++ + + ++A+ ++ + + T+ + L +LG +
Sbjct: 124 IIDCPPSLGVLTLNGLTAADKAIVPLQCEMLAHRGVGQFLRTVADVQQITNPNLRLLGAL 183
Query: 170 LNRY-GRTEN--DIPPDAAQDVMDVPLLA-VIPEDPAIREGTLEGIPAVKYKPESEGAKA 225
Y RT + D+ D A D D+ +LA IP E + G +V +++GA A
Sbjct: 184 PTLYDSRTTHTRDVLLDVA-DRYDLQVLAPPIPRTVRFAEASASG-SSVMAGRKNKGAVA 241
Query: 226 FVKLAQEVEK 235
+ +LAQ + K
Sbjct: 242 YRELAQALLK 251
>pir||C64662 regulatory protein spo0J - Helicobacter pylori (strain 26695)
>gi|2314295|gb|AAD08185.1| (AE000620) SpoOJ regulator
(soj) [Helicobacter pylori 26695]
Length = 264
Score = 70.6 bits (170), Expect = 2e-11
Identities = 68/268 (25%), Positives = 113/268 (41%), Gaps = 43/268 (16%)
Query: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGV--DDVDVT 58
M+ II++ + KGG GKTT NL+ +L KK+L +D D AN + LG D +D
Sbjct: 2 MSEIIAVANQKGGVGKTTTAVNLAASLAVHEKKILLIDFD-PQANATSSLGFRRDKIDYD 60
Query: 59 LHDVLAGEAKLQDAIYMTQFDNVYVLPGAV----------DWEHVMKADPRKLPEVIKSL 108
++ VL G ++ I TQ + ++P + D + K L ++S+
Sbjct: 61 IYHVLIGRKQISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESV 120
Query: 109 KGDYDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLR------KAG 162
G YD+I+ID P L ++++ + ++ E L T + +R
Sbjct: 121 VGLYDYIIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIRMLQKSTNPK 180
Query: 163 LAILGFI-----------------LNRYGRTENDIPPDAAQDVMDVPLLAVIPEDPAIRE 205
L I GF+ L +Y +E + +M IP+ + E
Sbjct: 181 LKIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATGEYIM-------IPKSVKLAE 233
Query: 206 GTLEGIPAVKYKPESEGAKAFVKLAQEV 233
G P + Y +S G+ A+ KLAQ +
Sbjct: 234 SPSFGKPILLYDIKSNGSIAYQKLAQSI 261
>gi|10954839 Probable repA gene [Agrobacterium tumefaciens]
>gi|2982700|dbj|BAA25270.1| (AB006857) repA
[Agrobacterium tumefaciens]
>gi|6002494|gb|AAF00012.1|AF060155_1 (AF060155) RepA
[Agrobacterium tumefaciens] >gi|6498192|dbj|BAA87644.1|
(AB016260) Probable repA gene [Agrobacterium
tumefaciens]
Length = 405
Score = 70.6 bits (170), Expect = 2e-11
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 27/199 (13%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGV-DDVDVTLHD 61
+++++ + KGG+GKTT +A+L+ L G +VLAVD D A+LS +LGV + DV ++
Sbjct: 122 QVVAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD-PQASLSALLGVLPETDVGANE 180
Query: 62 VLAGEAK-------LQDAIYMTQFDNVYVLPGAVDWEHVMKADPR--------------K 100
L + L+D I T FD ++++PG ++ P+ +
Sbjct: 181 TLYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALTDKGTRDGLFFTR 240
Query: 101 LPEVIKSLKGDYDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRK 160
+ + + DYD ++IDCP L +S + + ++ +P++ + + ++ R
Sbjct: 241 VAQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRD 300
Query: 161 AGLAILGFILNRYGRTEND 179
+LG + G + D
Sbjct: 301 ----LLGVVKEAGGNLQYD 315
>gb|AAC38747.1| (AF030373) chain length regulator/exporter [Streptococcus
pneumoniae] >gi|3818485|gb|AAC69527.1| (AF057294)
Cps23fD [Streptococcus pneumoniae]
Length = 229
Score = 70.6 bits (170), Expect = 2e-11
Identities = 46/173 (26%), Positives = 84/173 (47%), Gaps = 2/173 (1%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++ SI S K G GK+T +AN++ A G K L +DGD+ + + V + L +
Sbjct: 36 KVFSITSVKIGEGKSTTSANIAWAFARAGYKTLLIDGDIRNSVMLGVFKARNKITGLTEF 95
Query: 63 LAGEAKLQDAIYMTQFDNVYVL-PGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID-CP 120
L+G L + T +N++V+ G+V + ++++L+ +D+I++D P
Sbjct: 96 LSGTTDLSQGLCDTNIENLFVIQAGSVSPNPTALLQSKNFTTMLETLRKYFDYIIVDTAP 155
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRY 173
G+ +DA + + ++LVT D K L G LG +LN++
Sbjct: 156 VGVVIDAAIITRNCDASILVTEAGEINRRDIQKAKEQLEHTGKPFLGIVLNKF 208
>emb|CAA07397.1| (AJ006986) cap33fD [Streptococcus pneumoniae]
Length = 229
Score = 70.6 bits (170), Expect = 2e-11
Identities = 46/173 (26%), Positives = 84/173 (47%), Gaps = 2/173 (1%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++ SI S K G GK+T +AN++ A G K L +DGD+ + + V + L +
Sbjct: 36 KVFSITSVKIGEGKSTTSANIAWAFARAGYKTLLIDGDIRNSVMLGVFKARNKITGLTEF 95
Query: 63 LAGEAKLQDAIYMTQFDNVYVL-PGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID-CP 120
L+G L + T +N++V+ G+V + ++++L+ +D+I++D P
Sbjct: 96 LSGTTDLSQGLCDTNIENLFVIQAGSVSPNPTALLQSKNFTTMLETLRKYFDYIIVDTAP 155
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRY 173
G+ +DA + + ++LVT D K L G LG +LN++
Sbjct: 156 VGVVIDAAIITRNCDASILVTEAGEINRRDIQKAKEQLEHTGKPFLGIVLNKF 208
>pir||F72034 ParA chromosome partitioning ATPasen CP1066 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4377116|gb|AAD18943.1| (AE001661) chromosome
partitioning ATPase [Chlamydophila pneumoniae CWL029]
>gi|7189979|gb|AAF38838.1| (AE002263) ParA family
protein [Chlamydophila pneumoniae AR39]
>gi|8979179|dbj|BAA99013.1| (AP002548) chromosome
partitioning ATPase [Chlamydophila pneumoniae J138]
Length = 255
Score = 70.6 bits (170), Expect = 2e-11
Identities = 69/249 (27%), Positives = 115/249 (45%), Gaps = 20/249 (8%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGK-KVLAVDGDLTMANLSLVLGVD-DVDVTLH 60
+ I++ S KGGT KT+ T +L AL + + +VL +D D ANL+ LG+D D +L
Sbjct: 2 KTIAVNSFKGGTAKTSTTLHLGAALAQYHQARVLLIDFD-AQANLTSGLGLDPDCYDSLA 60
Query: 61 DVLAGEAKLQDAIYMTQFDNVYVLPGAVDWEHV-----MKADP---RKLPEVIKSLKGDY 112
VL GE ++Q+ I Q + ++P E + + AD +L V+ S++ Y
Sbjct: 61 VVLQGEKEIQEVIRPIQDTQLDLIPADTWLERIEVSGNLAADRYSHERLKYVLGSVQDKY 120
Query: 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV-----GIVLRKAGLAILG 167
D+++ID P L SA+++ + AL+ PE + ++ GI R L ILG
Sbjct: 121 DYVIIDTPPSLCWLTESALIAADYALICATPEFYSVKGLERLAGFIQGISARHP-LTILG 179
Query: 168 FIL---NRYGRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAK 224
L N G+ + + L I D + E + G P P + ++
Sbjct: 180 VALSFWNCRGKNNSAFAELIHKTFPGKLLNTKIRRDITVSEAAIHGKPVFATSPSARASE 239
Query: 225 AFVKLAQEV 233
+ L +E+
Sbjct: 240 DYFNLTKEL 248
>emb|CAA61616.1| (X89447) repA protein [Rhizobium leguminosarum]
Length = 398
Score = 70.2 bits (169), Expect = 2e-11
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 22/164 (13%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVD-DVDVTLHD 61
++I+ V+ KGG+GKTT A+L+ L G +VLA+D D A++S + G + DV ++
Sbjct: 116 QVITAVNFKGGSGKTTTAAHLAQYLALNGYRVLAIDLD-PQASMSALHGFQPEFDVGDNE 174
Query: 62 VLAGEAK-------LQDAIYMTQFDNVYVLPG---AVDWEH----VMKADPRK------L 101
L G + L+D I T F N+ ++PG +++EH V+ ++ RK +
Sbjct: 175 TLYGAVRYDEERRPLKDIIKKTYFANLDLVPGNLELMEFEHDTAKVLGSNDRKNIFFTRM 234
Query: 102 PEVIKSLKGDYDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEI 145
+ I S+ DYD +++DCP L +SA+ + L+ +P++
Sbjct: 235 DDAIASVADDYDVVVVDCPPQLGFLTISALCAATAVLVTVHPQM 278
>emb|CAB05937.1| (Z83335) unknown [Streptococcus pneumoniae]
Length = 221
Score = 70.2 bits (169), Expect = 2e-11
Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 2/172 (1%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++IS+ S G GKTT + N++++ G K L DGD+ + +S + L +
Sbjct: 36 KVISVTSVNPGEGKTTTSVNIAMSFARAGYKTLLFDGDIRNSVMSGFFKSREKITGLTEF 95
Query: 63 LAGEAKLQDAIYMTQFDNVYVL-PGAVDWEHVMKADPRKLPEVIKSLKGDYDFILIDC-P 120
L+G A L + T +N++V+ G+V + ++I++L+ +D+I++D P
Sbjct: 96 LSGTADLSHGLCDTNIENLFVVQSGSVSPNPTALLQSKNFNDMIETLRKYFDYIIVDTPP 155
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNR 172
G+ +DA + ++L+T + D K L + G LG +LN+
Sbjct: 156 IGIVIDAAIITQKCDASILITATGEANKRDVQKAKQQLEQTGELFLGVVLNK 207
>gi|10955106 repA [Agrobacterium tumefaciens] >gi|95114|pir||A32812 repA protein
- Agrobacterium tumefaciens plasmid pTiB6S3
>gi|154804|gb|AAA27402.1| (M24529) repA protein (GTG
start codon) [Plasmid pTiB6S3]
>gi|8572703|gb|AAF77149.1| (AF242881) repA
[Agrobacterium tumefaciens]
Length = 405
Score = 69.9 bits (168), Expect = 3e-11
Identities = 51/199 (25%), Positives = 96/199 (47%), Gaps = 27/199 (13%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGV-DDVDVTLHD 61
++I++ + KGG+GKTT +A+L+ L G +VLAVD D A+LS +LGV + DV ++
Sbjct: 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD-PQASLSALLGVLPETDVGANE 180
Query: 62 VLAGEAK-------LQDAIYMTQFDNVYVLPGAVDWEHVMKADPR--------------K 100
L + L+D I T FD ++++PG ++ P+ +
Sbjct: 181 TLYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDRGGRDGLFFTR 240
Query: 101 LPEVIKSLKGDYDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRK 160
+ + + DYD ++IDCP L +S + + ++ +P++ + + ++ R
Sbjct: 241 VAQAFDEVGDDYDVVVIDCPPQLGFLTLSGLCAATAMVVTVHPQMLDIASMSQFLLMTRD 300
Query: 161 AGLAILGFILNRYGRTEND 179
+LG + G + D
Sbjct: 301 ----LLGVVREAGGNLQYD 315
>gb|AAD10173.1| (AF026471) Cps2D [Streptococcus pneumoniae]
Length = 226
Score = 69.9 bits (168), Expect = 3e-11
Identities = 46/173 (26%), Positives = 82/173 (46%), Gaps = 2/173 (1%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++ SI S K G GK+T + N++ A G K L +DGD+ + + V D L +
Sbjct: 36 KVFSITSVKLGEGKSTTSTNIAWAFARAGYKTLLIDGDIRNSVMLGVFKARDKITGLTEF 95
Query: 63 LAGEAKLQDAIYMTQFDNVYVL-PGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID-CP 120
L+G L + T +N++V+ G+V + ++++L+ +D+I++D P
Sbjct: 96 LSGTTDLSQGLCDTNIENLFVIQAGSVSPNPTALLQRKNFSTMLETLRKYFDYIIVDTAP 155
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRY 173
G+ +DA + ++LVT D K L G LG +LN++
Sbjct: 156 VGVVIDAAIITRKCDASILVTEAGEINRRDIQKAKEQLEHTGKPFLGVVLNKF 208
>gb|AAF32419.1| (AF069392) SOJ-like protein [Vibrio parahaemolyticus]
Length = 259
Score = 69.9 bits (168), Expect = 3e-11
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 21/252 (8%)
Query: 6 SIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD--VDVTLHDVL 63
S+ + KGG GKTT T L+ L + G +VL VD D A+L+ LG D V +L D+
Sbjct: 5 SVANQKGGVGKTTSTVTLAGLLSQKGHRVLMVDTD-PHASLTTYLGYDSDTVSSSLFDLF 63
Query: 64 AGEAKLQDA----IYMTQFDNVYVLPGAVDWEHVMKADPRK------LPEVIKSLKGDYD 113
+ +D I T+ + + ++P + + + + L ++++ DYD
Sbjct: 64 QLKTFTRDTVKPLILETELEGMDIIPAHMSLATLDRVMGNRSGMGLILKRALQAVSQDYD 123
Query: 114 FILIDCPAGLQLDAMSAMLSGEEALLVTNPE---ISCLTDTMKVGIVLRKA-----GLAI 165
++LIDCP L + ++A+ + + L+ E + L ++ +++K+ + I
Sbjct: 124 YVLIDCPPILGVMMVNALAASDRILIPVQTEFLAMKGLERMIRTLTIMQKSRPDGFKVTI 183
Query: 166 LGFILNRYGRTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGAKA 225
+ + ++ R +D + + +P D R+ +L+ +PA + S G A
Sbjct: 184 VPTMYDKRTRASLQTLTQLKKDYPNQVWTSAVPIDTKFRDASLKHLPASHFASGSRGVFA 243
Query: 226 FVKLAQEVEKLA 237
+ +L +E+LA
Sbjct: 244 YKQLLIYLERLA 255
>gb|AAG19516.1| (AE005043) Mrp protein homolog; Mrp [Halobacterium sp. NRC-1]
Length = 343
Score = 69.9 bits (168), Expect = 3e-11
Identities = 67/256 (26%), Positives = 117/256 (45%), Gaps = 31/256 (12%)
Query: 4 IISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVD--VTLHD 61
++++ SGKGG GK+TV NL+ AL + G +V D D+ N+ ++ DD
Sbjct: 91 VVAVASGKGGVGKSTVAVNLAAALSDRGARVGLFDADIYGPNVPRMVDADDHPQATETET 150
Query: 62 VLAGEA---KLQDAIYMTQFDNVYVLPGAVDWEHVMKADPRKLPEVIKSLKGDY-DFILI 117
++ E KL +M D+ + G + V K L ++I+ ++ Y D++++
Sbjct: 151 IVPPEKHGMKLMSMAFMVGEDDPVIWRGPM----VHKV----LTQLIEDVEWGYLDYLVV 202
Query: 118 DCPAGL---QLDAMSAM-LSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRY 173
D P G QL + + L+G +++VT PE + D K + + +LG + N
Sbjct: 203 DLPPGTGDTQLTLLQTLPLTG--SVVVTTPEDVAVDDARKGLRMFGRHDTTVLGVVENMS 260
Query: 174 -------GRTENDIPPDAAQDVM---DVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
G T + ++ ++P L IP DP++R G G P V P++E
Sbjct: 261 SFVCPDCGGTHDIFGAGGGEEFATANELPFLGSIPLDPSVRAGGDNGQP-VALDPDNETG 319
Query: 224 KAFVKLAQEVEKLAGI 239
+F A E + G+
Sbjct: 320 ASFRTFAAETADMLGL 335
>emb|CAB59289.1| (AJ131984) cap37D [Streptococcus pneumoniae]
Length = 229
Score = 68.3 bits (164), Expect = 8e-11
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 2/173 (1%)
Query: 3 RIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDV 62
++ SI S K G GK+T + N++ A G K L +DGD+ + + V D L +
Sbjct: 36 KVFSITSVKLGEGKSTTSTNIAWAFARAGYKTLLIDGDIRNSVMLGVFKARDKITGLTEF 95
Query: 63 LAGEAKLQDAIYMTQFDNVYVL-PGAVDWEHVMKADPRKLPEVIKSLKGDYDFILID-CP 120
L+G L + T +N++V+ G+V + ++++L+ +D+I+++ P
Sbjct: 96 LSGTTDLSQGLCDTNIENLFVIQAGSVSPNPTALLQSKNFSTMLETLRKYFDYIIVNTAP 155
Query: 121 AGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRY 173
G+ +DA + ++LVT D K L G LG +LN++
Sbjct: 156 VGVVIDAAIITRKCDASILVTEAGEINRRDIQKAKEQLEHTGKPFLGVVLNKF 208
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.137 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86671219
Number of Sequences: 2977
Number of extensions: 3560596
Number of successful extensions: 12206
Number of sequences better than 1.0e-10: 130
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 11963
Number of HSP's gapped (non-prelim): 137
length of query: 245
length of database: 189,106,746
effective HSP length: 57
effective length of query: 188
effective length of database: 154,992,987
effective search space: 29138681556
effective search space used: 29138681556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)