BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0955 (PAB0955) DE:Hypothetical protein
(277 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75056 hypothetical protein PAB0955 - Pyrococcus abyssi (st... 563 e-160
pir||B71105 hypothetical protein PH0611 - Pyrococcus horikoshii ... 455 e-127
gb|AAK41308.1| Conserved hypothetical protein [Sulfolobus solfat... 116 3e-25
gi|11499791 conserved hypothetical protein [Archaeoglobus fulgid... 114 1e-24
emb|CAC11186.1| (AL445063) conserved hypothetical protein [Therm... 111 7e-24
pir||A72671 hypothetical protein APE0791 - Aeropyrum pernix (str... 103 3e-21
dbj|BAB17612.1| (AB044661) XPA binding protein 1 [Homo sapiens] 99 4e-20
emb|CAA09376.1| (AJ010842) ATP(GTP)-binding protein [Homo sapiens] 99 4e-20
gb|AAF49823.1| (AE003538) CG10222 gene product [Drosophila melan... 99 5e-20
pir||T39313 hypothetical protein SPBC119.15 - fission yeast (Sc... 98 9e-20
sp|P46577|YLB2_CAEEL HYPOTHETICAL 39.7 KD PROTEIN C34E10.2 IN CH... 98 2e-19
gi|11498150 conserved hypothetical protein [Archaeoglobus fulgid... 96 3e-19
emb|CAB51688.1| (AL109630) /prediction=(method:""genefinder"", v... 95 1e-18
emb|CAB36824.1| (AL035527) putative protein (fragment) [Arabidop... 89 6e-17
dbj|BAB08336.1| (AB007651) emb|CAB92117.1~gene_id:MWD9.17~simila... 89 6e-17
gi|6322532 Yjr072cp [Saccharomyces cerevisiae] >gi|1352889|sp|P4... 89 6e-17
pir||T05462 hypothetical protein T8O5.10 - Arabidopsis thaliana ... 89 6e-17
gb|AAF54055.1| (AE003672) CG2656 gene product [Drosophila melano... 84 2e-15
gi|6324836 Yor262wp [Saccharomyces cerevisiae] >gi|2132930|pir||... 82 1e-14
pir||T38803 purine nucleotide binding protein fet5 - fission yea... 78 9e-14
>pir||B75056 hypothetical protein PAB0955 - Pyrococcus abyssi (strain Orsay)
>gi|5458856|emb|CAB50343.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 277
Score = 563 bits (1436), Expect = e-160
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MKSLLTFKTLLNFKYLIRPRSEEILGVRAMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 60
MKSLLTFKTLLNFKYLIRPRSEEILGVRAMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA
Sbjct: 1 MKSLLTFKTLLNFKYLIRPRSEEILGVRAMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 60
Query: 61 YVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRL 120
YVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRL
Sbjct: 61 YVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRL 120
Query: 121 EKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALL 180
EKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALL
Sbjct: 121 EKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALL 180
Query: 181 IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMT 240
IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMT
Sbjct: 181 IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMT 240
Query: 241 EVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCGDLT 277
EVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCGDLT
Sbjct: 241 EVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCGDLT 277
>pir||B71105 hypothetical protein PH0611 - Pyrococcus horikoshii
>gi|3257017|dbj|BAA29700.1| (AP000003) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 455 bits (1158), Expect = e-127
Identities = 215/248 (86%), Positives = 232/248 (92%)
Query: 30 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIM 89
MI+VFVGTAGSGKT+LTG FG YLE+NYKVAYVNLDTGVKELPY+P IDVREFVTVEEIM
Sbjct: 5 MIIVFVGTAGSGKTSLTGAFGEYLEENYKVAYVNLDTGVKELPYKPDIDVREFVTVEEIM 64
Query: 90 REGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 149
+EGYGPNGAIVESYDRLM KF+ YL +IL LE + DYVLIDTPGQMETFLFHEFGV+LME
Sbjct: 65 KEGYGPNGAIVESYDRLMNKFDYYLKEILELESKKDYVLIDTPGQMETFLFHEFGVKLME 124
Query: 150 NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRK 209
NLPYPLVVY+SDPEIL+KP DYCFVRFFALLIDLRLGATT+PALNKVDLL EE+ E+HRK
Sbjct: 125 NLPYPLVVYLSDPEILRKPTDYCFVRFFALLIDLRLGATTVPALNKVDLLKEEQLEKHRK 184
Query: 210 YFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 269
YFED+DYL RLK DPSMQGLMAYKMCS+M EVLPP+RVLYLSAKTREGFEDLETLAYEH
Sbjct: 185 YFEDLDYLMGRLKFDPSMQGLMAYKMCSIMMEVLPPIRVLYLSAKTREGFEDLETLAYEH 244
Query: 270 YCTCGDLT 277
YCTCGDLT
Sbjct: 245 YCTCGDLT 252
>gb|AAK41308.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 259
Score = 116 bits (288), Expect = 3e-25
Identities = 81/242 (33%), Positives = 133/242 (54%), Gaps = 15/242 (6%)
Query: 28 RAMIVVFV-GTAGSGKTTLTGEFGRYLEDN-YKVAYVNLDTGVKELPYEPSIDVREFVTV 85
R M VF+ GTAGSGKTTLT YL D A +NLD V+ LPY P DVR++V
Sbjct: 3 RDMYYVFILGTAGSGKTTLTKNLQDYLLDQEMDTAVINLDPAVEHLPYTPDFDVRDYVDA 62
Query: 86 EEIMREGY-GPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFG 144
E+M+ + GPN +++ S D ++ K +E ++I ++E +YVL+DTPGQ+E F + + G
Sbjct: 63 YEVMQNYHLGPNSSLIASIDLILTKASEIKSEIDQIEA--NYVLVDTPGQIELFAYRDTG 120
Query: 145 ---VRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 201
+L+ L +++ D + K+ + + + I RL I LNK+DLL+E
Sbjct: 121 RLISQLIRGNNKALGLFLLDSFLAKEARSFISLLLLSSSIKFRLDLPIINILNKIDLLTE 180
Query: 202 EEKERHRKYFEDIDYLTARL-KLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 260
+E E+ + ++ + L L +LD L+ + S+ ++P +S++ +GF
Sbjct: 181 KELEQILAWGDNAENLIDELGRLDEYSLELVNLLIESLSYNLIP------MSSEEGKGFN 234
Query: 261 DL 262
+L
Sbjct: 235 EL 236
>gi|11499791 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483224|pir||A69526 conserved hypothetical protein
AF2209 - Archaeoglobus fulgidus
>gi|2648316|gb|AAB89044.1| (AE000953) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 254
Score = 114 bits (282), Expect = 1e-24
Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 19/256 (7%)
Query: 30 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAY--VNLDTGVKELPYEPSIDVREFVTVEE 87
+ V F GTAGSGKT +T + D K+ Y VNLD G LPY IDVRE+ T+E+
Sbjct: 4 IFVYFTGTAGSGKTYMTKALADWF-DLKKLDYLTVNLDPGADFLPYSADIDVREWFTLED 62
Query: 88 IM-REGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVR 146
IM R GPNGA + D + ++ ++I E YVLIDTPGQ+E F E R
Sbjct: 63 IMGRYNVGPNGAQIIGADLVSTLIDDIRDEIQLSSSE--YVLIDTPGQLELFTLRESS-R 119
Query: 147 LMENLPYP---LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 203
++ N P ++VY+ DP + K P+ + + F A RL + L+K D+LSE E
Sbjct: 120 VLVNALNPERSVMVYLFDPVVSKTPSGFLSMLFMASSAVFRLEIPQVLVLSKSDILSERE 179
Query: 204 KERHRKYFEDIDYLTARLKLDP---SMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 260
ER ++ ED + L L L+ +++ + K + ++P SA T G E
Sbjct: 180 LERIVEWSEDPETLYDSLNLERKTLNLELFLLLKEAGLFRPLIP------ASALTGYGME 233
Query: 261 DLETLAYEHYCTCGDL 276
D+ E + DL
Sbjct: 234 DIYDAIQEIFYGGDDL 249
>emb|CAC11186.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 259
Score = 111 bits (276), Expect = 7e-24
Identities = 70/242 (28%), Positives = 129/242 (52%), Gaps = 25/242 (10%)
Query: 35 VGTAGSGKTTLTGEFGRYLED-NYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-G 92
VG AG+GK+T +G +L+ + A +NLD G LPYEP D+RE+++++ IM +
Sbjct: 8 VGPAGTGKSTFSGSLNEWLKRMEFDSAIINLDPGADYLPYEPDFDIREYISLDSIMSDYN 67
Query: 93 YGPNGAIVESYDRLM---EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 149
GPNG+ + + D ++ +K E+L + ++ YV++DTPGQ+E F F ++E
Sbjct: 68 LGPNGSQIVAADMIVSYTDKITEFLEDL-----DDYYVVVDTPGQIELFTFRTSSTEIVE 122
Query: 150 NL--PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERH 207
+ ++ YI+D + P+ + + + R + LNK+DL+S+E+ +
Sbjct: 123 KVSGQRSMMAYIADAPLATYPSGFIAQKMLYASVFSRFFRPMMFVLNKIDLVSDEDIQEV 182
Query: 208 RKYFEDIDYLT-------ARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 260
+K+ D L +++ D + L A+K ++MT++ P +S++ GFE
Sbjct: 183 KKWESSPDLLNDAFMEEKGQMEKDYFVGILQAFKESNIMTKIYP------VSSRDSFGFE 236
Query: 261 DL 262
D+
Sbjct: 237 DI 238
>pir||A72671 hypothetical protein APE0791 - Aeropyrum pernix (strain K1)
>gi|5104454|dbj|BAA79769.1| (AP000060) 270aa long
hypothetical protein [Aeropyrum pernix]
Length = 270
Score = 103 bits (254), Expect = 3e-21
Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 30/249 (12%)
Query: 32 VVFVGTAGSGKTTLTGEFG-RYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 90
++ GTAG+GK++L G R VA +NLD ++LPY+PS+D R++V+V E+M
Sbjct: 13 IIVTGTAGAGKSSLVGALADRITSLGANVATLNLDPAAEKLPYDPSVDARDYVSVAELMD 72
Query: 91 EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKE-----NDYVLIDTPGQMETFLFHEFGV 145
+G GPNGA+V + D L +N +L + +E DYV++DTPGQ+E F + G
Sbjct: 73 KGLGPNGALVAAVDSL-------INHVLDIREEIDYYSPDYVVVDTPGQLELFAYRVGGP 125
Query: 146 RLMENL--PYPLV-VYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 202
++ + Y V +++ D + A + +RLG + A++K D+L E
Sbjct: 126 LVLRGIMGDYNGVNIFLIDSIFIDNAISLVSALLLASSVAVRLGLPQVNAVSKADMLLPE 185
Query: 203 EKERHRKYFEDIDYLTARLKLDPSMQG---LMAYKMCS-----------MMTEVLPPVRV 248
+E + +L L+ D + +G +A ++ + VL P V
Sbjct: 186 VREEVIPRLGEPGFLEFLLEKDKTYEGAGKALAEELARAIETTGFIGEVLQASVLEPETV 245
Query: 249 LYLSAKTRE 257
L+AK ++
Sbjct: 246 TLLAAKAQQ 254
>dbj|BAB17612.1| (AB044661) XPA binding protein 1 [Homo sapiens]
Length = 374
Score = 99.5 bits (244), Expect = 4e-20
Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 11/247 (4%)
Query: 32 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEIMR 90
++ +G AGSGKTT +L YV NLD V E+P+ +ID+R+ V +E+M+
Sbjct: 22 LLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMK 81
Query: 91 E-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 149
+ G GPNG IV S + +F++ + I + + + YVLIDTPGQ+E F + G + E
Sbjct: 82 QYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITE 141
Query: 150 NL--PYP-LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER 206
L +P +V+Y+ D P + +A I + I +NK D++
Sbjct: 142 ALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAV- 200
Query: 207 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL---E 263
++ +D + L + + + M ++ E +RV+ +SA G ++L
Sbjct: 201 --EWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQV 258
Query: 264 TLAYEHY 270
T A E Y
Sbjct: 259 TSAAEEY 265
>emb|CAA09376.1| (AJ010842) ATP(GTP)-binding protein [Homo sapiens]
Length = 358
Score = 99.5 bits (244), Expect = 4e-20
Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 11/247 (4%)
Query: 32 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEIMR 90
++ +G AGSGKTT +L YV NLD V E+P+ +ID+R+ V +E+M+
Sbjct: 6 LLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMK 65
Query: 91 E-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 149
+ G GPNG IV S + +F++ + I + + + YVLIDTPGQ+E F + G + E
Sbjct: 66 QYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITE 125
Query: 150 NL--PYP-LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER 206
L +P +V+Y+ D P + +A I + I +NK D++
Sbjct: 126 ALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAV- 184
Query: 207 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL---E 263
++ +D + L + + + M ++ E +RV+ +SA G ++L
Sbjct: 185 --EWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQV 242
Query: 264 TLAYEHY 270
T A E Y
Sbjct: 243 TSAAEEY 249
>gb|AAF49823.1| (AE003538) CG10222 gene product [Drosophila melanogaster]
Length = 306
Score = 99.1 bits (243), Expect = 5e-20
Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 14/223 (6%)
Query: 33 VFVGTAGSGKTTLTGEFGR-YLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 91
+ +G GSGKTT GE + Y E +V VNLD + + YEP + V E +TVE+ M
Sbjct: 18 LIIGPPGSGKTTYCGEALKFYRELGRQVGVVNLDPANENMSYEPVLSVMELITVEDCMEH 77
Query: 92 -GYGPNGAIVESYDRLMEKFNEYLNKILR-LEKENDYVLIDTPGQMETFLFHEFGVRLME 149
GPNGA++ + L + ++L LR L +Y L D PGQ+E + H R+ E
Sbjct: 78 LKLGPNGALMHCAEYLADHLEDWLLPALRKLSATYNYFLFDCPGQVELYTHHNAMARIFE 137
Query: 150 NLP---YPLV-VYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKE 205
L Y LV V + D +P + AL LR+ + L+K DLL + E +
Sbjct: 138 RLERERYSLVTVNLIDSHYCSEPAKFIATLLMALNTMLRMSLPHVNVLSKADLLKKHETK 197
Query: 206 RHRK--YFEDI---DYLTARLKLDPSMQGL--MAYKMCSMMTE 241
H Y+ D+ YL +L DP+M+ + +CSM+ +
Sbjct: 198 LHFNVDYYTDVLDLKYLLDKLDDDPAMRKYRKLNAAICSMVED 240
>pir||T39313 hypothetical protein SPBC119.15 - fission yeast
(Schizosaccharomyces pombe) >gi|2959376|emb|CAA17930.1|
(AL022117) hypothetical protein [Schizosaccharomyces
pombe]
Length = 367
Score = 98.3 bits (241), Expect = 9e-20
Identities = 68/244 (27%), Positives = 116/244 (46%), Gaps = 17/244 (6%)
Query: 32 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEIMR 90
++ VG AGSGKTT + +L K Y+ NLD V+ LPYE +ID+R+ + +E+M+
Sbjct: 11 IIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTINYKEVMK 70
Query: 91 E-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 149
+ GPNG I+ S + + KF++ L + + D++LIDTPGQ+E F + G + +
Sbjct: 71 QYNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICD 130
Query: 150 NL--PYP-LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER 206
L +P + Y+ D + + +A + + I NK D+ ++ E
Sbjct: 131 TLASSWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVYNKCDV---QDSEF 187
Query: 207 HRKYFEDIDYLTARLKLDPSM---------QGLMAYKMCSMMTEVLPPVRVLYLSAKTRE 257
+K+ D + + D M G + M M+ E + + S+ T E
Sbjct: 188 AKKWMTDFEEFQQAVTKDEGMSSEGATSGYMGSLVNSMSLMLEEFYRHLDFVSCSSVTGE 247
Query: 258 GFED 261
G +D
Sbjct: 248 GMDD 251
>sp|P46577|YLB2_CAEEL HYPOTHETICAL 39.7 KD PROTEIN C34E10.2 IN CHROMOSOME III
>gi|7497018|pir||T15759 hypothetical protein C34E10.2 -
Caenorhabditis elegans >gi|500725|gb|AAA19064.1|
(U10402) C34E10.2 gene product [Caenorhabditis elegans]
Length = 355
Score = 97.5 bits (239), Expect = 2e-19
Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 7/238 (2%)
Query: 32 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEIMR 90
++ +G AGSGKTT +L YV NLD V ++PY ++D+R+ V +E+M+
Sbjct: 33 ILVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKEVMK 92
Query: 91 E-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 149
E G GPNGAI+ + + +F++ + I + + L+DTPGQ+E F + G + +
Sbjct: 93 EFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPGQIEAFTWSASGSIITD 152
Query: 150 NL--PYPLVV-YISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER 206
+L +P VV YI D P + +A I R I NK D++ +
Sbjct: 153 SLASSHPTVVMYIVDSARATNPTTFMSNMLYACSILYRTKLPFIVVFNKADIVKPTFALK 212
Query: 207 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 264
+ FE D A S ++ + ++ E ++ + +S+ T EGFED+ T
Sbjct: 213 WMQDFERFD--EALEDARSSYMNDLSRSLSLVLDEFYCGLKTVCVSSATGEGFEDVMT 268
>gi|11498150 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483024|pir||C69317 conserved hypothetical protein
AF0539 - Archaeoglobus fulgidus
>gi|2650082|gb|AAB90696.1| (AE001067) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 231
Score = 96.3 bits (236), Expect = 3e-19
Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 23/246 (9%)
Query: 30 MIVVFVGTAGSGKTTLTGEFGRYLEDN-YKVAYVNLDTGVKELPYEPSIDVREFVTVEEI 88
M V +G AGSGK+T F +L++ Y V VNLD + Y +VREFV E +
Sbjct: 1 MEVFVLGCAGSGKSTFVRSFSEFLQERGYSVKCVNLDPA-SDPAYRADKNVREFVKTENV 59
Query: 89 MRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 147
M E G G NGA+++S + E E L+ E D+VL DTPGQ+E F++ E G +
Sbjct: 60 MVEYGLGVNGALIKSVEIASEHAEE-------LKAEGDFVLYDTPGQLELFIYSEAGRKF 112
Query: 148 MENL--PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKE 205
+ L + +++ D + P +++ LRL T+ A K D+
Sbjct: 113 VRELSGSFSCSLFLVDLTTVTDPESLLSAIMQDVIVSLRLSLPTLTAFTKSDVAD----- 167
Query: 206 RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 265
D+ L +K + + K+ + P R + +S + G+E+L +
Sbjct: 168 ------VDVRSLLGEIKHREGVLAELMEKLVDFIELTTIPYRPIKISNIKKTGYEELFSA 221
Query: 266 AYEHYC 271
YE +C
Sbjct: 222 LYELFC 227
>emb|CAB51688.1| (AL109630) /prediction=(method:""genefinder"", version:""084"",
score:""71.06"")~/match=(desc:""ATP(GTP)-BINDING PROTEIN
(FRAGMENT)"", species:""Homo sapiens (Human)"",
ranges:(query:117988..118080,
target:SPTREMBL::O76004:33..3, score:""105.00""), (qu>
>gi|7290105|gb|AAF45570.1| (AE003419) EG:BACR7A4.17 gene
product [Drosophila melanogaster]
Length = 382
Score = 94.8 bits (232), Expect = 1e-18
Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 8/242 (3%)
Query: 32 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 91
++ +G AGSGKTT T + ++ ++ + VNLD +E+PY +D+R+ V E+M++
Sbjct: 26 ILVLGMAGSGKTTFTQKLIQHAQEKFNPYVVNLDPACREVPYAAHVDIRDTVNYREVMKQ 85
Query: 92 -GYGPNGAIVESYDRLMEKFNEYLNKILRL-EKENDYVLIDTPGQMETFLFHEFGVRLME 149
GPNG IV + + K ++ + R E+ + + +IDTPGQ+E F + G + E
Sbjct: 86 YQLGPNGGIVTALNMFTTKMAQFAELVRRAGERGHKWCVIDTPGQIEVFNWSASGSIITE 145
Query: 150 NLP--YP-LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER 206
L +P +VVY+ D E P + +A I + + ALNK+DL ++
Sbjct: 146 GLATMFPTIVVYVMDVERSACPTTFMSNMLYACSILYKTRLPFLVALNKIDL---KDCGF 202
Query: 207 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 266
+ D + + + S + M + +R +SAKT GF L T
Sbjct: 203 VMDWMTDFEAFQEAQEEEHSFVSNLTRTMSLTLDTFYENLRTCGVSAKTGVGFTQLLTKI 262
Query: 267 YE 268
E
Sbjct: 263 LE 264
>emb|CAB36824.1| (AL035527) putative protein (fragment) [Arabidopsis thaliana]
>gi|7268977|emb|CAB81287.1| (AL161555) putative protein
(fragment) [Arabidopsis thaliana]
Length = 372
Score = 88.9 bits (217), Expect = 6e-17
Identities = 74/269 (27%), Positives = 124/269 (45%), Gaps = 30/269 (11%)
Query: 28 RAMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVE 86
+ +I++ VG AGSGKT+ + D+ YV NLD V LP+ +ID+R+ V +
Sbjct: 15 KPIIIIVVGMAGSGKTSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYK 74
Query: 87 EIMRE-GYGPNGAIVESYDRLMEKFNE------------------YLNKILRLEKENDYV 127
E+M++ GPNG I+ S + KF+E ++ I + + DYV
Sbjct: 75 EVMKQYNLGPNGGILTSLNLFATKFDEVNIPLELVQMITDFFSHCVVSVIEKRADQLDYV 134
Query: 128 LIDTPGQMETFLFHEFGVRLMENL--PYPLVV-YISDPEILKKPNDYCFVRFFALLIDLR 184
L+DTPGQ+E F + G + E +P VV Y+ D P + +A I +
Sbjct: 135 LVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSSSPITFMSNMLYACSILYK 194
Query: 185 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP 244
+ A NK D+ + + ++ ED + A ++ D S +A + + E
Sbjct: 195 TRLPLVLAFNKTDV---ADHKFALEWMEDFEVFQAAIQSDNSYTATLANSLSLSLYEFYR 251
Query: 245 PVRVLYLSAKTREG----FEDLETLAYEH 269
+R + +SA + G F+ +E A E+
Sbjct: 252 NIRSVGVSAISGAGMDGFFKAIEASAEEY 280
>dbj|BAB08336.1| (AB007651) emb|CAB92117.1~gene_id:MWD9.17~similar to unknown
protein [Arabidopsis thaliana]
Length = 291
Score = 88.9 bits (217), Expect = 6e-17
Identities = 72/246 (29%), Positives = 113/246 (45%), Gaps = 15/246 (6%)
Query: 33 VFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 91
V +G GSGKTT ++L KVA VNLD LPYE +++ E + +E++M E
Sbjct: 6 VVIGPPGSGKTTYCNGMSQFLSLMGRKVAIVNLDPANDALPYECGVNIEELIKLEDVMSE 65
Query: 92 -GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 150
GPNG +V + L EK ++L L+ ++ Y+L D PGQ+E F H+ ++
Sbjct: 66 HSLGPNGGLVYCMEYL-EKNIDWLESKLKPLLKDHYILFDFPGQVELFFIHDSTKNVLTK 124
Query: 151 LPYPL-----VVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKE 205
L L V + D + P +Y +L L + + L+K+DL+ K
Sbjct: 125 LIKSLNLRLTAVQLIDSHLCCDPGNYVSSLLLSLSTMLHMELPHVNVLSKIDLIGSYGKL 184
Query: 206 RHRKYF----EDIDYLTARLKLDP--SMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF 259
F +D+ YL L DP + + ++CS++ E V L + +E
Sbjct: 185 AFNLDFYTDVQDLSYLEHHLSQDPRSAKYRKLTKELCSVI-EDYSLVNFTTLDIQDKESV 243
Query: 260 EDLETL 265
DL L
Sbjct: 244 GDLVKL 249
>gi|6322532 Yjr072cp [Saccharomyces cerevisiae]
>gi|1352889|sp|P47122|YJ42_YEAST HYPOTHETICAL 43.2 KDA
PROTEIN IN HAM1-PEM2 INTERGENIC REGION
>gi|1077890|pir||S57091 hypothetical protein YJR072c -
yeast (Saccharomyces cerevisiae)
>gi|1015754|emb|CAA89600.1| (Z49572) ORF YJR072c
[Saccharomyces cerevisiae] >gi|1019693|gb|AAB39297.1|
(L47993) ORF YJR072c [Saccharomyces cerevisiae]
Length = 385
Score = 88.9 bits (217), Expect = 6e-17
Identities = 67/246 (27%), Positives = 116/246 (46%), Gaps = 20/246 (8%)
Query: 32 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEIMR 90
++ +G AGSGKTT +L YV NLD V +PY +ID+R+ + +++M
Sbjct: 6 IICIGMAGSGKTTFMQRLNSHLRAEKTPPYVINLDPAVLRVPYGANIDIRDSIKYKKVM- 64
Query: 91 EGY--GPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM 148
E Y GPNGAIV S + K ++ + + + + + +IDTPGQ+E F++ G +
Sbjct: 65 ENYQLGPNGAIVTSLNLFSTKIDQVIRLVEQKKDKFQNCIIDTPGQIECFVWSASGAIIT 124
Query: 149 ENL--PYPLVV-YISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKE 205
E+ +P V+ YI D P + +A I + I NK D+ + +
Sbjct: 125 ESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVC---KAD 181
Query: 206 RHRKYFEDIDYLTARLKLDPSMQG----------LMAYKMCSMMTEVLPPVRVLYLSAKT 255
+++ D + A +K D + G + M M+ E + V+ +S+ T
Sbjct: 182 FAKEWMTDFESFQAAIKEDQDLNGDNGLGSGYMSSLVNSMSLMLEEFYSQLDVVGVSSFT 241
Query: 256 REGFED 261
+GF++
Sbjct: 242 GDGFDE 247
>pir||T05462 hypothetical protein T8O5.10 - Arabidopsis thaliana (fragment)
>gi|2894558|emb|CAA17147.1| (AL021890) putative protein
[Arabidopsis thaliana]
Length = 373
Score = 88.9 bits (217), Expect = 6e-17
Identities = 74/269 (27%), Positives = 124/269 (45%), Gaps = 30/269 (11%)
Query: 28 RAMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVE 86
+ +I++ VG AGSGKT+ + D+ YV NLD V LP+ +ID+R+ V +
Sbjct: 16 KPIIIIVVGMAGSGKTSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYK 75
Query: 87 EIMRE-GYGPNGAIVESYDRLMEKFNE------------------YLNKILRLEKENDYV 127
E+M++ GPNG I+ S + KF+E ++ I + + DYV
Sbjct: 76 EVMKQYNLGPNGGILTSLNLFATKFDEVNIPLELVQMITDFFSHCVVSVIEKRADQLDYV 135
Query: 128 LIDTPGQMETFLFHEFGVRLMENL--PYPLVV-YISDPEILKKPNDYCFVRFFALLIDLR 184
L+DTPGQ+E F + G + E +P VV Y+ D P + +A I +
Sbjct: 136 LVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSSSPITFMSNMLYACSILYK 195
Query: 185 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP 244
+ A NK D+ + + ++ ED + A ++ D S +A + + E
Sbjct: 196 TRLPLVLAFNKTDV---ADHKFALEWMEDFEVFQAAIQSDNSYTATLANSLSLSLYEFYR 252
Query: 245 PVRVLYLSAKTREG----FEDLETLAYEH 269
+R + +SA + G F+ +E A E+
Sbjct: 253 NIRSVGVSAISGAGMDGFFKAIEASAEEY 281
>gb|AAF54055.1| (AE003672) CG2656 gene product [Drosophila melanogaster]
Length = 235
Score = 83.9 bits (204), Expect = 2e-15
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 17/196 (8%)
Query: 33 VFVGTAGSGKTTLTGEFGRYLED-NYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 91
+ VG AGSGK+T +Y D V VNLD + Y P D+R+ + +++ M +
Sbjct: 6 IIVGPAGSGKSTYCSLMQQYAMDCKRNVQVVNLDPAAEHFTYNPLTDIRDLIHLDDAMED 65
Query: 92 G---YGPNGAIVESYDRLMEKFNEYL--------NKILRLEKENDYVLIDTPGQMETFLF 140
YGPNG ++ + L+E E+L N+++ E ++DY+L D PGQ+E F
Sbjct: 66 EELHYGPNGGLIFCLEFLIEN-QEWLKEQLCGGENELMVGEPDDDYILFDMPGQIELFTH 124
Query: 141 HEFGVRLMENLP----YPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKV 196
+ G +L+E L VV+ D + + + AL + + I L KV
Sbjct: 125 LKMGRQLVELLESWNFRTCVVFCLDSQFMVDGAKFISGTMAALSVMANMEQPHINVLTKV 184
Query: 197 DLLSEEEKERHRKYFE 212
DLLS + +++ Y E
Sbjct: 185 DLLSSDARKQLEMYLE 200
>gi|6324836 Yor262wp [Saccharomyces cerevisiae] >gi|2132930|pir||S67159
probable membrane protein YOR262w - yeast (Saccharomyces
cerevisiae) >gi|1420591|emb|CAA99484.1| (Z75170) ORF
YOR262w [Saccharomyces cerevisiae]
Length = 347
Score = 81.5 bits (198), Expect = 1e-14
Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 15/223 (6%)
Query: 33 VFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEIMRE 91
+ +G GSGK+T ++ + + V N+D LPY ++D+R+F+T+EEIM+E
Sbjct: 6 IVIGPPGSGKSTYCNGCSQFFNAIGRHSQVVNMDPANDALPYPCAVDIRDFITLEEIMQE 65
Query: 92 -GYGPNGAIVESYDRLMEKFNEYLNKILRL-EKENDYVLIDTPGQMETFLFHEFGVRLME 149
GPNG ++ + + L + ++ +I L E+E Y++ D PGQ+E F H + +
Sbjct: 66 QQLGPNGGLMYAVESLDNSIDLFILQIKSLVEEEKAYLVFDCPGQVELFTHHSSLFNIFK 125
Query: 150 NLPYPL-----VVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL-SEEE 203
+ L VV + D + P+ Y + AL L + I +K+D+L S E
Sbjct: 126 KMEKELDIRFCVVNLIDCFYMTSPSQYISILLLALRSMLMMDLPHINVFSKIDMLKSYGE 185
Query: 204 KERHRKYF---EDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL 243
Y+ +D+DYL ++ + S + K S +TE +
Sbjct: 186 LPFRLDYYTEVQDLDYLEPYIEKEGSS---VLGKKYSKLTETI 225
>pir||T38803 purine nucleotide binding protein fet5 - fission yeast
(Schizosaccharomyces pombe) >gi|11281649|pir||T43541
purine nucleotide binding protein fet5 - fission yeast
(Schizosaccharomyces pombe) >gi|2330815|emb|CAB11284.1|
(Z98602) purine nucleotide binding protein fet5
[Schizosaccharomyces pombe] >gi|2529429|gb|AAC49837.1|
(U80218) ATP(GTP)-binding protein Fet5
[Schizosaccharomyces pombe] >gi|4103135|gb|AAD01680.1|
(AF020907) putative transcription factor Fet5
[Schizosaccharomyces pombe]
Length = 276
Score = 78.4 bits (190), Expect = 9e-14
Identities = 50/179 (27%), Positives = 94/179 (51%), Gaps = 10/179 (5%)
Query: 31 IVVFV-GTAGSGKTTLTGEFGRYLEDNYKVAY-VNLDTGVKELPYEPSIDVREFVTVEEI 88
+ FV G A SGK+T G Y++ + + VNLD + +EP++D+R+ ++++++
Sbjct: 4 VAAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISIDDV 63
Query: 89 MRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 147
M E YGPNG ++ ++ LME ++LN+ + + + DY++ D PGQ+E + L
Sbjct: 64 MEELDYGPNGGLIYCFEFLMENL-DWLNEEIG-DYDEDYLIFDMPGQIELYTHVPILPAL 121
Query: 148 MENLPY-----PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 201
+ +L P VY+ + + L + A+ + + I L+K+DLL +
Sbjct: 122 IRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKMDLLKD 180
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104575461
Number of Sequences: 2977
Number of extensions: 4514104
Number of successful extensions: 15437
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 15386
Number of HSP's gapped (non-prelim): 20
length of query: 277
length of database: 189,106,746
effective HSP length: 54
effective length of query: 223
effective length of database: 156,788,448
effective search space: 34963823904
effective search space used: 34963823904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)